Wall clock time and date at job start Tue Mar 31 2020 08:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47480 * 2 1 4 4 C 1.53003 * 109.47505 * 120.00199 * 2 1 3 5 5 C 1.53000 * 109.46918 * 64.99529 * 4 2 1 6 6 N 1.46494 * 109.47229 * 180.02562 * 5 4 2 7 7 C 1.46500 * 119.99994 * 270.00529 * 6 5 4 8 8 C 1.50698 * 109.47180 * 269.99705 * 7 6 5 9 9 H 1.08000 * 119.99885 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00432 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00547 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99836 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46883 * 89.99997 * 12 10 8 14 14 H 1.48500 * 109.47243 * 210.00035 * 12 10 8 15 15 H 1.48501 * 109.46965 * 330.00523 * 12 10 8 16 16 C 1.34772 * 120.00276 * 90.00045 * 6 5 4 17 17 O 1.21281 * 120.00727 * 180.02562 * 16 6 5 18 18 C 1.50707 * 119.99738 * 0.02562 * 16 6 5 19 19 C 1.52996 * 109.47449 * 179.97438 * 18 16 6 20 20 N 1.46494 * 109.47444 * 180.02562 * 19 18 16 21 21 C 1.36345 * 125.63345 * 90.00307 * 20 19 18 22 22 C 1.34850 * 108.21864 * 179.97438 * 21 20 19 23 23 C 1.40894 * 107.41649 * 0.02562 * 22 21 20 24 24 C 1.34846 * 107.41755 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47463 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47218 * 299.99834 * 1 2 3 27 27 H 1.08998 * 109.47323 * 59.99819 * 1 2 3 28 28 H 1.09005 * 109.47218 * 240.00166 * 2 1 3 29 29 H 1.08991 * 109.47638 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47269 * 300.00803 * 3 2 1 31 31 H 1.09005 * 109.46760 * 59.99885 * 3 2 1 32 32 H 1.09000 * 109.46705 * 305.00203 * 4 2 1 33 33 H 1.08992 * 109.47331 * 184.99782 * 4 2 1 34 34 H 1.09007 * 109.46943 * 60.00118 * 5 4 2 35 35 H 1.09001 * 109.47526 * 300.00380 * 5 4 2 36 36 H 1.08998 * 109.47249 * 29.99795 * 7 6 5 37 37 H 1.09009 * 109.47269 * 149.99899 * 7 6 5 38 38 H 0.96996 * 120.00150 * 179.97438 * 11 10 8 39 39 H 1.09009 * 109.46880 * 59.99997 * 18 16 6 40 40 H 1.08993 * 109.47272 * 300.00141 * 18 16 6 41 41 H 1.09006 * 109.46659 * 59.99780 * 19 18 16 42 42 H 1.09005 * 109.47449 * 300.00857 * 19 18 16 43 43 H 1.08006 * 125.89009 * 359.71336 * 21 20 19 44 44 H 1.08004 * 126.29266 * 180.02562 * 22 21 20 45 45 H 1.07995 * 126.28821 * 179.97438 * 23 22 21 46 46 H 1.08002 * 125.89342 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 7 2.1231 -2.8860 2.3842 7 6 3.4513 -3.5040 2.3828 8 6 3.3408 -4.9312 1.9117 9 1 2.3776 -5.3372 1.6401 10 6 4.4694 -5.7188 1.8275 11 7 4.3729 -6.9644 1.4168 12 14 6.1356 -5.0165 2.2966 13 1 6.3823 -5.2508 3.7421 14 1 7.1961 -5.6830 1.4989 15 1 6.1528 -3.5572 2.0218 16 6 1.3500 -2.9527 3.4862 17 8 1.7540 -3.5240 4.4768 18 6 -0.0166 -2.3174 3.4875 19 6 -0.6796 -2.5364 4.8488 20 7 -2.0082 -1.9193 4.8499 21 6 -3.1693 -2.5329 4.4834 22 6 -4.1759 -1.6457 4.6185 23 6 -3.6156 -0.4401 5.0850 24 6 -2.2882 -0.6366 5.2177 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 2.0698 -2.6550 0.3001 35 1 0.5489 -2.2724 1.1420 36 1 4.1091 -2.9502 1.7130 37 1 3.8618 -3.4855 3.3925 38 1 5.1669 -7.5183 1.3572 39 1 -0.6290 -2.7713 2.7083 40 1 0.0795 -1.2484 3.2976 41 1 -0.0672 -2.0828 5.6283 42 1 -0.7757 -3.6055 5.0385 43 1 -3.2656 -3.5522 4.1397 44 1 -5.2197 -1.8262 4.4079 45 1 -4.1510 0.4735 5.2973 46 1 -1.5705 0.0957 5.5570 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073382495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:36 Heat of formation + Delta-G solvation = -3.567149 kcal Electronic energy + Delta-G solvation = -23833.673669 eV Core-core repulsion = 20530.770209 eV Total energy + Delta-G solvation = -3302.903460 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09292 -39.39751 -36.96138 -34.78700 -33.88579 -32.58290 -30.01866 -29.17889 -28.73890 -27.48700 -27.22499 -24.32327 -23.33869 -21.95064 -20.42381 -20.02302 -19.86373 -18.48411 -17.53501 -16.97182 -16.15155 -15.79981 -15.40538 -15.05280 -14.51217 -14.30684 -13.92073 -13.77673 -13.62730 -13.29878 -13.05662 -12.86689 -12.66667 -12.34860 -12.32382 -12.17112 -12.07673 -11.99031 -11.82577 -11.60297 -11.33179 -11.16466 -11.03178 -10.95432 -10.63755 -10.53901 -10.42784 -10.18029 -9.59503 -9.21505 -8.63643 -8.57128 -8.13524 -7.81226 -6.13429 -4.12644 2.31495 2.94091 3.08197 3.18508 3.25202 3.31142 3.32983 3.76210 4.35036 4.71521 4.78110 4.83747 4.86547 4.90672 5.01667 5.15130 5.21809 5.23499 5.25829 5.41781 5.47009 5.51049 5.59607 5.64708 5.66982 5.69615 5.78312 5.79127 5.84175 5.85130 6.02543 6.10731 6.17262 6.29494 6.32957 6.34859 6.40793 6.63536 6.87192 7.02508 7.24496 7.28528 7.41801 7.55438 8.13283 8.40838 8.80988 8.90247 9.46557 10.99893 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.004657 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.969134 B = 6011.124328 C = 7616.482971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.133 4.133 5 C 0.109 3.891 6 N -0.588 5.588 7 C 0.216 3.784 8 C -0.530 4.530 9 H 0.074 0.926 10 C 0.073 3.927 11 N -0.897 5.897 12 Si 0.876 3.124 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.266 1.266 16 C 0.512 3.488 17 O -0.543 6.543 18 C -0.155 4.155 19 C 0.120 3.880 20 N -0.444 5.444 21 C -0.013 4.013 22 C -0.208 4.208 23 C -0.207 4.207 24 C -0.016 4.016 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.036 0.964 38 H 0.265 0.735 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.159 0.841 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.218 16.134 0.295 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.172 4.172 5 C -0.015 4.015 6 N -0.319 5.319 7 C 0.096 3.904 8 C -0.568 4.568 9 H 0.092 0.908 10 C -0.129 4.129 11 N -0.535 5.535 12 Si 0.702 3.298 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.191 1.191 16 C 0.298 3.702 17 O -0.421 6.421 18 C -0.195 4.195 19 C -0.002 4.002 20 N -0.119 5.119 21 C -0.143 4.143 22 C -0.232 4.232 23 C -0.232 4.232 24 C -0.146 4.146 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.177 0.823 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.515 15.483 0.778 18.732 hybrid contribution 0.915 0.198 0.016 0.936 sum -9.601 15.681 0.794 18.404 Atomic orbital electron populations 1.21900 0.95284 1.01940 1.01515 1.21075 0.95806 0.96065 0.98512 1.21824 1.00993 0.96040 1.01428 1.22111 1.01795 0.95652 0.97616 1.21600 0.99199 0.91277 0.89411 1.47905 1.18644 1.53493 1.11831 1.19669 0.79029 0.93943 0.97787 1.21304 0.96171 0.94538 1.44818 0.90789 1.24849 0.98939 0.94632 0.94502 1.69890 1.29714 1.06943 1.46938 0.86862 0.84083 0.79611 0.79205 1.19893 1.21019 1.19082 1.20058 0.86037 0.80547 0.83563 1.90690 1.73960 1.44007 1.33435 1.22045 0.95777 1.02942 0.98785 1.21619 0.80499 1.00339 0.97775 1.44293 1.07006 1.10605 1.49985 1.21893 0.84874 0.99529 1.08047 1.20858 0.98426 0.94309 1.09623 1.20848 0.93567 0.99133 1.09625 1.21829 0.97334 0.86909 1.08554 0.92339 0.92820 0.92903 0.90845 0.92731 0.92883 0.92893 0.92185 0.91391 0.89681 0.91147 0.95212 0.94582 0.92512 0.88691 0.88852 0.88543 0.88295 0.82344 0.85063 0.85115 0.82523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.95 37.15 0.33 -1.06 16 2 C -0.10 -0.98 2.92 -90.62 -0.26 -1.24 16 3 C -0.15 -1.34 9.19 37.16 0.34 -0.99 16 4 C -0.13 -1.65 5.01 -26.73 -0.13 -1.78 16 5 C 0.11 1.63 4.97 -4.04 -0.02 1.61 16 6 N -0.59 -11.45 2.46 -175.06 -0.43 -11.88 16 7 C 0.22 5.12 4.23 -5.19 -0.02 5.10 16 8 C -0.53 -14.91 9.94 -34.44 -0.34 -15.25 16 9 H 0.07 2.29 8.06 -52.49 -0.42 1.86 16 10 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 12 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 16 C 0.51 9.68 7.67 -10.98 -0.08 9.60 16 17 O -0.54 -12.48 15.56 5.56 0.09 -12.39 16 18 C -0.15 -2.09 4.58 -27.88 -0.13 -2.22 16 19 C 0.12 1.55 5.38 -4.05 -0.02 1.53 16 20 N -0.44 -5.48 2.75 -117.13 -0.32 -5.80 16 21 C -0.01 -0.16 11.43 -16.75 -0.19 -0.35 16 22 C -0.21 -2.44 10.86 -39.78 -0.43 -2.88 16 23 C -0.21 -2.40 10.86 -39.78 -0.43 -2.83 16 24 C -0.02 -0.19 11.43 -16.75 -0.19 -0.38 16 25 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.71 7.22 -51.93 -0.38 0.34 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 35 H 0.07 0.92 4.86 -51.93 -0.25 0.66 16 36 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 37 H 0.04 0.92 6.85 -51.92 -0.36 0.56 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.09 1.22 7.40 -51.92 -0.38 0.84 16 40 H 0.09 1.11 7.19 -51.93 -0.37 0.74 16 41 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.10 1.36 8.10 -51.93 -0.42 0.94 16 43 H 0.16 1.64 8.06 -52.48 -0.42 1.21 16 44 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 45 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -32.82 372.91 -8.58 -41.40 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.95 Total: 2.15 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -1.69 Total: -9.14 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.02 Total: -44.23 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.82 -8.58 -41.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073382495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.830 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds