Wall clock time and date at job start Tue Mar 31 2020 08:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 C 1.52999 * 109.46954 * 239.99655 * 2 1 3 5 5 C 1.53000 * 109.46862 * 119.99435 * 2 1 3 6 6 N 1.46499 * 109.47132 * 54.26594 * 5 2 1 7 7 C 1.46503 * 120.00103 * 275.81240 * 6 5 2 8 8 C 1.50700 * 109.46607 * 269.99688 * 7 6 5 9 9 H 1.07997 * 120.00283 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99711 * 179.97438 * 8 7 6 11 11 N 1.31507 * 120.00029 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99857 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47285 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47471 * 119.99902 * 12 10 8 15 15 H 1.48502 * 109.47057 * 240.00255 * 12 10 8 16 16 C 1.34780 * 120.00224 * 95.80422 * 6 5 2 17 17 O 1.21281 * 120.00402 * 185.44001 * 16 6 5 18 18 C 1.50705 * 119.99833 * 5.44820 * 16 6 5 19 19 C 1.52995 * 109.46956 * 174.41897 * 18 16 6 20 20 N 1.46506 * 109.47008 * 179.97438 * 19 18 16 21 21 C 1.36336 * 125.63628 * 89.99923 * 20 19 18 22 22 C 1.34849 * 108.22161 * 179.97438 * 21 20 19 23 23 C 1.40896 * 107.41602 * 359.97438 * 22 21 20 24 24 C 1.34852 * 107.41460 * 0.02562 * 23 22 21 25 25 H 1.09006 * 109.46981 * 300.00675 * 1 2 3 26 26 H 1.09003 * 109.47238 * 60.00139 * 1 2 3 27 27 H 1.09000 * 109.47146 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46822 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.47096 * 299.99543 * 3 2 1 30 30 H 1.08999 * 109.47297 * 59.99464 * 3 2 1 31 31 H 1.08993 * 109.47162 * 304.13287 * 4 2 1 32 32 H 1.08999 * 109.46819 * 64.13042 * 4 2 1 33 33 H 1.09002 * 109.46829 * 184.12555 * 4 2 1 34 34 H 1.08993 * 109.47382 * 294.26511 * 5 2 1 35 35 H 1.09001 * 109.46510 * 174.26111 * 5 2 1 36 36 H 1.08997 * 109.46772 * 29.99555 * 7 6 5 37 37 H 1.09001 * 109.47207 * 149.99909 * 7 6 5 38 38 H 0.97004 * 120.00212 * 180.02562 * 11 10 8 39 39 H 1.09002 * 109.47106 * 54.41747 * 18 16 6 40 40 H 1.08995 * 109.46786 * 294.42044 * 18 16 6 41 41 H 1.09002 * 109.47335 * 59.99990 * 19 18 16 42 42 H 1.08995 * 109.47494 * 299.99715 * 19 18 16 43 43 H 1.08007 * 125.89285 * 359.71437 * 21 20 19 44 44 H 1.08000 * 126.29488 * 180.02562 * 22 21 20 45 45 H 1.08001 * 126.29574 * 180.02562 * 23 22 21 46 46 H 1.07995 * 125.89140 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2493 6 7 1.4422 -2.0567 1.3204 7 6 0.1133 -2.2340 1.9112 8 6 0.2513 -2.4926 3.3894 9 1 1.2308 -2.5223 3.8433 10 6 -0.8730 -2.6912 4.1624 11 7 -2.0658 -2.6555 3.6096 12 14 -0.7021 -3.0110 5.9948 13 1 0.7356 -3.0019 6.3670 14 1 -1.4164 -1.9512 6.7511 15 1 -1.2894 -4.3348 6.3232 16 6 2.1147 -3.1224 0.8422 17 8 1.5818 -4.2114 0.8105 18 6 3.5289 -2.9608 0.3472 19 6 4.1050 -4.3331 -0.0074 20 7 5.4796 -4.1760 -0.4893 21 6 6.6008 -4.2007 0.2860 22 6 7.6711 -4.0232 -0.5148 23 6 7.1932 -3.8843 -1.8329 24 6 5.8490 -3.9817 -1.7872 25 1 -0.3633 0.5140 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6175 -1.7253 -1.2869 32 1 1.7383 -0.1666 -2.1376 33 1 3.1275 -0.7858 -1.2130 34 1 1.7629 -0.1514 2.1362 35 1 3.1251 -0.8110 1.1994 36 1 -0.4775 -1.3317 1.7537 37 1 -0.3841 -3.0812 1.4390 38 1 -2.8568 -2.7948 4.1534 39 1 4.1367 -2.5020 1.1271 40 1 3.5334 -2.3250 -0.5381 41 1 3.4972 -4.7919 -0.7873 42 1 4.1004 -4.9689 0.8779 43 1 6.6270 -4.3348 1.3574 44 1 8.7048 -3.9938 -0.2032 45 1 7.7931 -3.7286 -2.7174 46 1 5.1805 -3.9176 -2.6329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074354074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:45 Heat of formation + Delta-G solvation = 4.746223 kcal Electronic energy + Delta-G solvation = -24394.435969 eV Core-core repulsion = 21091.893004 eV Total energy + Delta-G solvation = -3302.542965 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.07728 -39.60802 -37.16373 -34.21128 -33.64409 -32.43268 -29.91502 -28.72072 -27.76572 -27.20488 -26.83026 -25.60204 -24.17839 -22.24194 -20.40179 -19.86636 -19.35011 -18.00368 -17.48020 -16.68318 -15.97069 -15.62141 -15.44736 -14.62147 -14.44323 -14.25271 -13.83783 -13.66748 -13.63352 -13.16969 -12.89300 -12.58155 -12.46633 -12.30679 -12.15855 -12.03193 -11.93740 -11.75224 -11.44620 -11.37184 -11.34329 -11.04120 -10.90089 -10.85532 -10.61617 -10.46652 -10.21226 -10.16635 -9.58134 -9.07921 -8.54206 -8.45855 -8.11721 -7.68406 -6.08623 -4.13173 2.33889 2.98047 3.09791 3.25949 3.27888 3.34343 3.38093 3.92204 4.40812 4.81495 4.88938 4.92033 4.97484 4.99191 5.13072 5.24984 5.27111 5.31308 5.43486 5.45485 5.62020 5.66002 5.67215 5.70624 5.78704 5.85887 5.91988 5.95282 6.09712 6.13392 6.17640 6.27225 6.31023 6.36686 6.38341 6.53218 6.73149 7.04263 7.04379 7.30732 7.39979 7.44239 7.49816 7.87693 8.19982 8.34512 8.83396 8.99877 9.51873 10.99170 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.004717 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.211890 B = 5934.968347 C = 7225.997919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.137 4.137 4 C -0.143 4.143 5 C 0.119 3.881 6 N -0.588 5.588 7 C 0.237 3.763 8 C -0.528 4.528 9 H 0.056 0.944 10 C 0.062 3.938 11 N -0.893 5.893 12 Si 0.896 3.104 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.512 3.488 17 O -0.547 6.547 18 C -0.167 4.167 19 C 0.120 3.880 20 N -0.443 5.443 21 C -0.014 4.014 22 C -0.208 4.208 23 C -0.208 4.208 24 C -0.015 4.015 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.042 0.958 38 H 0.263 0.737 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.158 0.842 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.194 4.736 -9.746 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.195 4.195 4 C -0.200 4.200 5 C -0.006 4.006 6 N -0.319 5.319 7 C 0.118 3.882 8 C -0.567 4.567 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.532 5.532 12 Si 0.724 3.276 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.209 1.209 16 C 0.298 3.702 17 O -0.425 6.425 18 C -0.208 4.208 19 C -0.002 4.002 20 N -0.118 5.118 21 C -0.144 4.144 22 C -0.233 4.233 23 C -0.232 4.232 24 C -0.146 4.146 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.176 0.824 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.322 4.100 -9.571 16.132 hybrid contribution 0.030 -0.028 1.136 1.137 sum 12.352 4.072 -8.435 15.502 Atomic orbital electron populations 1.22052 0.93761 1.03218 1.00999 1.20987 0.97003 0.95147 0.95597 1.21807 1.00541 0.95302 1.01857 1.22020 1.00063 1.00740 0.97180 1.21573 0.96876 0.84579 0.97573 1.48135 1.20526 1.05311 1.57883 1.19540 0.77318 0.98608 0.92708 1.21489 0.92915 1.49160 0.93117 0.92568 1.24912 0.95122 0.95182 0.98781 1.69933 0.97599 1.49816 1.35872 0.86480 0.78128 0.77936 0.85092 1.19860 1.20948 1.20892 1.19990 0.86933 0.84821 0.78465 1.90681 1.69726 1.25698 1.56436 1.22312 0.96027 0.98635 1.03826 1.21622 0.79013 0.97309 1.02257 1.44312 1.06363 1.54273 1.06863 1.21876 0.85312 1.10040 0.97221 1.20851 0.97901 1.11056 0.93450 1.20849 0.93647 1.11192 0.97551 1.21841 0.96263 1.09879 0.86592 0.92198 0.93716 0.91022 0.92903 0.92733 0.92383 0.92494 0.92817 0.92829 0.90083 0.91526 0.93541 0.93972 0.92769 0.89046 0.88028 0.88456 0.88573 0.82425 0.85102 0.85113 0.82481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 6.98 37.16 0.26 -1.94 16 2 C -0.09 -1.15 0.85 -154.50 -0.13 -1.28 16 3 C -0.14 -1.50 8.47 37.16 0.31 -1.18 16 4 C -0.14 -1.76 6.84 37.16 0.25 -1.50 16 5 C 0.12 1.84 4.58 -4.04 -0.02 1.82 16 6 N -0.59 -11.58 2.00 -175.06 -0.35 -11.93 16 7 C 0.24 5.87 3.93 -5.19 -0.02 5.85 16 8 C -0.53 -14.49 9.39 -34.44 -0.32 -14.81 16 9 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 12 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 C 0.51 9.84 6.40 -10.98 -0.07 9.77 16 17 O -0.55 -12.81 15.54 5.56 0.09 -12.72 16 18 C -0.17 -2.35 4.38 -27.88 -0.12 -2.47 16 19 C 0.12 1.60 5.39 -4.04 -0.02 1.58 16 20 N -0.44 -5.61 2.75 -117.13 -0.32 -5.93 16 21 C -0.01 -0.17 11.43 -16.75 -0.19 -0.37 16 22 C -0.21 -2.49 10.86 -39.78 -0.43 -2.92 16 23 C -0.21 -2.45 10.86 -39.78 -0.43 -2.89 16 24 C -0.02 -0.18 11.43 -16.75 -0.19 -0.38 16 25 H 0.06 0.97 7.72 -51.93 -0.40 0.57 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.30 5.76 -51.93 -0.30 1.01 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.81 6.74 -51.93 -0.35 0.46 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.59 6.49 -51.93 -0.34 0.25 16 34 H 0.08 1.34 8.11 -51.93 -0.42 0.91 16 35 H 0.07 0.89 6.11 -51.93 -0.32 0.57 16 36 H 0.05 1.15 5.31 -51.93 -0.28 0.87 16 37 H 0.04 1.20 7.35 -51.93 -0.38 0.82 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.09 1.22 7.34 -51.93 -0.38 0.84 16 40 H 0.10 1.27 4.67 -51.93 -0.24 1.03 16 41 H 0.10 1.31 8.04 -51.93 -0.42 0.90 16 42 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.16 1.65 8.06 -52.48 -0.42 1.23 16 44 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 45 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -31.38 362.55 -8.23 -39.61 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.60 Total: 3.32 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -1.22 Total: -9.08 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.06 Total: -43.05 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.38 -8.23 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074354074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.354 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds