Wall clock time and date at job start Tue Mar 31 2020 08:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46843 * 89.99951 * 7 6 5 9 9 C 1.46899 * 111.00298 * 293.95781 * 8 7 6 10 10 C 1.50694 * 109.47340 * 69.99943 * 9 8 7 11 11 H 1.07996 * 119.99936 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99998 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99842 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99955 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47027 * 89.99551 * 14 12 10 16 16 H 1.48496 * 109.46940 * 209.99581 * 14 12 10 17 17 H 1.48498 * 109.46795 * 329.99434 * 14 12 10 18 18 C 1.46902 * 110.99904 * 169.99854 * 8 7 6 19 19 C 1.53002 * 109.47091 * 189.99954 * 18 8 7 20 20 C 1.52999 * 109.47175 * 180.02562 * 19 18 8 21 21 C 1.53000 * 109.47076 * 64.99821 * 20 19 18 22 22 C 1.53002 * 109.47472 * 185.00209 * 20 19 18 23 23 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 24 24 N 1.31967 * 120.83264 * 0.02562 * 23 6 5 25 25 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 26 26 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 28 28 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 29 29 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 31 31 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 32 32 H 1.09004 * 109.46930 * 190.00289 * 9 8 7 33 33 H 1.09009 * 109.46765 * 309.99474 * 9 8 7 34 34 H 0.97003 * 120.00323 * 180.02562 * 13 12 10 35 35 H 1.08996 * 109.47310 * 309.99967 * 18 8 7 36 36 H 1.09001 * 109.46694 * 70.00143 * 18 8 7 37 37 H 1.09001 * 109.47483 * 300.00282 * 19 18 8 38 38 H 1.09001 * 109.47197 * 60.00497 * 19 18 8 39 39 H 1.09002 * 109.47044 * 305.00453 * 20 19 18 40 40 H 1.09002 * 109.46668 * 60.00402 * 21 20 19 41 41 H 1.08999 * 109.47195 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47408 * 300.00253 * 21 20 19 43 43 H 1.09007 * 109.46795 * 59.99635 * 22 20 19 44 44 H 1.08999 * 109.47124 * 180.02562 * 22 20 19 45 45 H 1.08996 * 109.46776 * 300.00072 * 22 20 19 46 46 H 1.07994 * 119.58392 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0799 5.4653 -1.3834 9 6 5.0742 4.6267 -2.0659 10 6 4.4973 3.2546 -2.3017 11 1 3.4927 3.0281 -1.9766 12 6 5.2525 2.2881 -2.9315 13 7 6.4761 2.5638 -3.3269 14 14 4.5371 0.5875 -3.2243 15 1 3.8529 0.5586 -4.5419 16 1 5.6298 -0.4180 -3.2117 17 1 3.5601 0.2703 -2.1521 18 6 4.4654 6.8821 -1.4295 19 6 4.4250 7.3748 -2.8774 20 6 4.8271 8.8503 -2.9255 21 6 6.2863 8.9956 -2.4890 22 6 4.6669 9.3763 -4.3533 23 6 1.8772 3.5097 0.0021 24 7 1.3187 2.3141 0.0026 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0229 0.3694 -0.0035 29 1 5.1255 2.5946 0.0011 30 1 3.2187 5.7201 0.5158 31 1 4.8376 4.9803 0.5150 32 1 5.3368 5.0797 -3.0220 33 1 5.9669 4.5439 -1.4458 34 1 7.0073 1.8840 -3.7703 35 1 3.7708 7.4675 -0.8270 36 1 5.4749 6.9969 -1.0346 37 1 5.1195 6.7895 -3.4800 38 1 3.4155 7.2600 -3.2722 39 1 4.1881 9.4231 -2.2534 40 1 6.9253 8.4228 -3.1611 41 1 6.5729 10.0467 -2.5237 42 1 6.4004 8.6209 -1.4719 43 1 3.6273 9.2727 -4.6642 44 1 4.9539 10.4273 -4.3876 45 1 5.3059 8.8035 -5.0253 46 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085823221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:07 Heat of formation + Delta-G solvation = -2.685859 kcal Electronic energy + Delta-G solvation = -24412.704042 eV Core-core repulsion = 21109.838798 eV Total energy + Delta-G solvation = -3302.865245 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 4.43 seconds Orbital eigenvalues (eV) -40.01060 -38.03179 -37.03503 -35.32549 -32.74498 -31.76761 -30.76006 -28.48954 -27.62676 -26.98796 -26.55113 -24.32878 -22.93191 -22.59830 -21.37537 -20.00373 -19.42787 -17.74455 -16.68754 -16.35121 -15.49502 -15.15333 -15.11161 -14.64522 -14.28914 -13.93128 -13.81241 -13.60859 -13.35242 -13.16823 -12.72328 -12.61094 -12.38012 -12.09200 -12.02879 -11.93875 -11.58001 -11.39051 -11.11541 -11.07872 -10.86664 -10.79919 -10.62986 -10.52812 -10.38364 -10.25423 -10.05266 -9.75546 -9.34925 -8.83914 -8.61867 -8.32186 -7.46714 -7.28578 -6.14514 -4.04973 1.99622 2.21501 3.30457 3.38665 3.50258 3.68617 4.36612 4.51582 4.92654 5.06389 5.12738 5.19328 5.25479 5.34559 5.53099 5.58903 5.61160 5.67808 5.71015 5.76580 5.81918 5.90713 5.92771 5.94769 6.00298 6.04212 6.10543 6.16878 6.19763 6.24076 6.31456 6.37581 6.44373 6.57793 6.71738 6.79397 6.81897 7.17792 7.19755 7.28325 7.29535 7.75363 7.91261 8.03651 8.12837 8.47423 8.64984 8.95927 9.49239 10.93875 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.016427 B = 0.005064 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.115141 B = 5527.587441 C = 6559.255357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.317 6.317 3 C 0.312 3.688 4 C -0.215 4.215 5 C 0.047 3.953 6 C -0.147 4.147 7 C 0.117 3.883 8 N -0.536 5.536 9 C 0.187 3.813 10 C -0.493 4.493 11 H 0.079 0.921 12 C 0.061 3.939 13 N -0.887 5.887 14 Si 0.866 3.134 15 H -0.284 1.284 16 H -0.288 1.288 17 H -0.242 1.242 18 C 0.058 3.942 19 C -0.110 4.110 20 C -0.095 4.095 21 C -0.148 4.148 22 C -0.145 4.145 23 C 0.133 3.867 24 N -0.564 5.564 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.035 0.965 33 H -0.010 1.010 34 H 0.262 0.738 35 H 0.057 0.943 36 H 0.024 0.976 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 6.215 5.598 9.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.225 6.225 3 C 0.133 3.867 4 C -0.236 4.236 5 C 0.021 3.979 6 C -0.150 4.150 7 C -0.011 4.011 8 N -0.260 5.260 9 C 0.062 3.938 10 C -0.530 4.530 11 H 0.097 0.903 12 C -0.142 4.142 13 N -0.526 5.526 14 Si 0.693 3.307 15 H -0.210 1.210 16 H -0.214 1.214 17 H -0.165 1.165 18 C -0.070 4.070 19 C -0.148 4.148 20 C -0.114 4.114 21 C -0.205 4.205 22 C -0.203 4.203 23 C -0.020 4.020 24 N -0.289 5.289 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.142 0.858 29 H 0.153 0.847 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.008 0.992 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.995 5.761 5.261 9.840 hybrid contribution 1.267 -0.764 -0.247 1.500 sum -4.729 4.996 5.014 8.513 Atomic orbital electron populations 1.22676 0.78619 1.01766 1.02011 1.86191 1.21840 1.25797 1.88683 1.19644 0.89294 0.84187 0.93617 1.20696 0.91563 0.99125 1.12203 1.20993 1.00289 0.90259 0.86386 1.20203 0.94208 0.95717 1.04841 1.20628 0.97794 0.92289 0.90418 1.62195 1.49087 1.01275 1.13470 1.19853 0.88187 0.91917 0.93848 1.21671 1.00948 0.95109 1.35278 0.90333 1.24962 0.94791 0.99115 0.95347 1.69964 1.09006 1.34414 1.39167 0.86985 0.79761 0.84056 0.79896 1.21024 1.21394 1.16544 1.22044 0.97865 0.90417 0.96658 1.21646 1.02318 0.93734 0.97093 1.21094 0.96678 0.96954 0.96663 1.21889 0.96356 1.00654 1.01628 1.21821 1.01606 1.00124 0.96709 1.21820 0.92090 0.92838 0.95232 1.67149 1.40627 0.98666 1.22458 0.92775 0.89662 0.92862 0.85838 0.84713 0.91846 0.95186 0.94657 0.99189 0.92820 0.92461 0.95786 0.91159 0.91576 0.91784 0.92628 0.93469 0.92549 0.92830 0.93302 0.92677 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 10.38 101.05 1.05 1.71 16 2 O -0.32 -6.02 10.48 -18.72 -0.20 -6.22 16 3 C 0.31 6.37 7.42 -17.12 -0.13 6.24 16 4 C -0.21 -4.39 7.06 -39.27 -0.28 -4.67 16 5 C 0.05 0.95 6.03 -39.31 -0.24 0.71 16 6 C -0.15 -2.82 3.47 -104.47 -0.36 -3.18 16 7 C 0.12 2.09 5.13 -4.98 -0.03 2.07 16 8 N -0.54 -10.63 4.56 -237.52 -1.08 -11.71 16 9 C 0.19 4.47 4.53 -4.98 -0.02 4.45 16 10 C -0.49 -12.63 5.39 -34.44 -0.19 -12.82 16 11 H 0.08 2.06 4.69 -52.49 -0.25 1.82 16 12 C 0.06 1.63 5.44 -17.82 -0.10 1.54 16 13 N -0.89 -24.96 13.29 55.43 0.74 -24.23 16 14 Si 0.87 21.00 28.46 -169.99 -4.84 16.16 16 15 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.24 -5.71 4.99 56.52 0.28 -5.43 16 18 C 0.06 0.97 4.71 -3.82 -0.02 0.95 16 19 C -0.11 -1.76 4.64 -26.73 -0.12 -1.88 16 20 C -0.09 -1.22 2.92 -90.62 -0.26 -1.48 16 21 C -0.15 -1.85 8.95 37.16 0.33 -1.51 16 22 C -0.15 -1.71 9.19 37.16 0.34 -1.37 16 23 C 0.13 2.50 10.64 -17.56 -0.19 2.31 16 24 N -0.56 -11.20 9.22 -13.33 -0.12 -11.32 16 25 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 28 H 0.12 2.44 7.86 -52.49 -0.41 2.02 16 29 H 0.14 2.82 7.70 -52.48 -0.40 2.42 16 30 H 0.06 0.97 7.88 -51.93 -0.41 0.56 16 31 H 0.03 0.54 7.96 -51.93 -0.41 0.12 16 32 H 0.04 0.92 5.98 -51.93 -0.31 0.61 16 33 H -0.01 -0.25 7.99 -51.92 -0.41 -0.66 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.06 0.84 7.93 -51.93 -0.41 0.43 16 36 H 0.02 0.40 6.54 -51.93 -0.34 0.06 16 37 H 0.07 1.30 6.31 -51.93 -0.33 0.97 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 43 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.14 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -28.75 356.23 -8.27 -37.03 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.93 Total: 1.87 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -0.20 Total: -6.95 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.47 Total: -47.26 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.20 Total: -6.22 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.84 Total: 16.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.75 -8.27 -37.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085823221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.339 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.43 seconds