Wall clock time and date at job start Tue Mar 31 2020 08:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47293 * 2 1 4 4 C 1.53003 * 109.47182 * 240.00026 * 2 1 3 5 5 C 1.50696 * 109.47148 * 59.99963 * 4 2 1 6 6 H 1.08001 * 120.00119 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99837 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00401 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99989 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47344 * 90.00107 * 9 7 5 11 11 H 1.48500 * 109.47103 * 210.00509 * 9 7 5 12 12 H 1.48507 * 109.46907 * 329.99874 * 9 7 5 13 13 C 1.53001 * 109.46900 * 120.00003 * 2 1 3 14 14 N 1.46902 * 109.47016 * 299.46660 * 13 2 1 15 15 C 1.46897 * 110.99755 * 209.71106 * 14 13 2 16 16 C 1.53002 * 109.47157 * 71.72263 * 15 14 13 17 17 O 1.42905 * 109.46945 * 65.90562 * 16 15 14 18 18 C 1.46903 * 110.99722 * 85.76067 * 14 13 2 19 19 C 1.50696 * 109.46789 * 200.41994 * 18 14 13 20 20 C 1.38675 * 120.42044 * 270.25188 * 19 18 14 21 21 C 1.38630 * 118.41894 * 180.24587 * 20 19 18 22 22 C 1.38221 * 119.16471 * 359.74808 * 21 20 19 23 23 N 1.31857 * 120.76270 * 359.97438 * 22 21 20 24 24 C 1.31886 * 121.72506 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47052 * 309.88149 * 1 2 3 26 26 H 1.08998 * 109.46604 * 69.88095 * 1 2 3 27 27 H 1.09003 * 109.46999 * 189.87900 * 1 2 3 28 28 H 1.08990 * 109.47274 * 185.09494 * 3 2 1 29 29 H 1.09005 * 109.46723 * 305.09611 * 3 2 1 30 30 H 1.09003 * 109.46984 * 65.09422 * 3 2 1 31 31 H 1.08999 * 109.46931 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47246 * 300.00122 * 4 2 1 33 33 H 0.97000 * 120.00193 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46994 * 179.46899 * 13 2 1 35 35 H 1.08997 * 109.47391 * 59.47007 * 13 2 1 36 36 H 1.09001 * 109.47240 * 191.72449 * 15 14 13 37 37 H 1.08999 * 109.47262 * 311.72035 * 15 14 13 38 38 H 1.09002 * 109.46883 * 185.90108 * 16 15 14 39 39 H 1.09001 * 109.47357 * 305.90330 * 16 15 14 40 40 H 0.96698 * 113.99928 * 180.02562 * 17 16 15 41 41 H 1.08999 * 109.47152 * 80.41889 * 18 14 13 42 42 H 1.09003 * 109.46977 * 320.41896 * 18 14 13 43 43 H 1.08003 * 120.78749 * 359.97300 * 20 19 18 44 44 H 1.08003 * 120.41614 * 179.73101 * 21 20 19 45 45 H 1.07994 * 119.61873 * 180.02562 * 22 21 20 46 46 H 1.08003 * 119.61606 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8713 -0.4816 -3.7319 8 7 2.6274 -1.5509 -3.8526 9 14 1.2492 0.3994 -5.2572 10 1 2.2275 1.4411 -5.6608 11 1 1.0845 -0.5795 -6.3617 12 1 -0.0591 1.0368 -4.9617 13 6 2.0400 -0.7213 1.2493 14 7 1.5608 -0.0213 2.4486 15 6 2.5055 -0.1786 3.5625 16 6 3.7615 0.6506 3.2869 17 8 3.4260 2.0397 3.2930 18 6 0.2189 -0.4839 2.8272 19 6 -0.4400 0.5498 3.7037 20 6 -0.2862 0.5035 5.0811 21 6 -0.9148 1.4722 5.8481 22 6 -1.6643 2.4482 5.2187 23 7 -1.7840 2.4645 3.9057 24 6 -1.2002 1.5593 3.1447 25 1 -0.3633 0.6589 0.7886 26 1 -0.3632 0.3535 -0.9650 27 1 -0.3633 -1.0125 0.1763 28 1 3.1262 1.4439 -0.0913 29 1 1.6041 1.9820 -0.8409 30 1 1.7532 1.9293 0.9321 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -1.7489 -1.2493 33 1 2.8624 -1.8819 -4.7336 34 1 3.1299 -0.7295 1.2445 35 1 1.6689 -1.7461 1.2541 36 1 2.0389 0.1646 4.4859 37 1 2.7783 -1.2292 3.6621 38 1 4.5042 0.4528 4.0599 39 1 4.1694 0.3796 2.3132 40 1 4.1761 2.6262 3.1242 41 1 0.2990 -1.4245 3.3720 42 1 -0.3804 -0.6341 1.9292 43 1 0.3056 -0.2715 5.5456 44 1 -0.8203 1.4641 6.9240 45 1 -2.1568 3.2066 5.8090 46 1 -1.3215 1.6048 2.0725 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093086529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:23 Heat of formation + Delta-G solvation = -13.385417 kcal Electronic energy + Delta-G solvation = -24596.347874 eV Core-core repulsion = 21293.018662 eV Total energy + Delta-G solvation = -3303.329212 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25588 -38.55954 -36.47341 -35.04430 -32.65055 -32.09471 -31.74300 -29.06631 -27.05162 -26.80057 -26.03105 -24.37395 -23.61754 -22.77582 -21.88075 -20.48976 -18.05850 -17.25667 -17.03042 -16.40428 -16.13218 -15.96666 -15.11031 -14.93216 -14.37378 -14.24418 -13.83309 -13.55291 -13.27486 -13.08467 -13.07232 -12.98256 -12.46265 -12.40571 -11.97056 -11.95138 -11.86937 -11.16475 -10.97994 -10.77213 -10.71356 -10.56779 -10.36995 -10.32732 -9.98381 -9.84774 -9.73770 -9.54709 -9.37739 -8.93842 -8.89918 -8.81921 -8.29336 -7.94756 -5.94278 -3.93797 1.17230 1.32033 3.35430 3.41970 3.45312 3.78025 4.24386 4.40474 4.50252 4.52113 4.77528 4.84975 4.99268 5.04984 5.17684 5.27304 5.37986 5.41522 5.43309 5.56394 5.62767 5.67199 5.81470 5.85413 5.90256 5.91620 6.09246 6.11681 6.27136 6.28333 6.37092 6.57860 6.76396 6.79713 6.86001 6.92887 7.26286 7.27062 7.30155 7.38843 7.51590 7.72945 7.80750 7.88197 8.05381 8.06512 8.51798 9.11798 9.69088 11.17420 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.004246 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.695383 B = 6592.589378 C = 7296.651505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 C -0.113 4.113 4 C 0.033 3.967 5 C -0.504 4.504 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 C 0.062 3.938 14 N -0.514 5.514 15 C 0.050 3.950 16 C 0.083 3.917 17 O -0.555 6.555 18 C 0.075 3.925 19 C -0.110 4.110 20 C -0.074 4.074 21 C -0.176 4.176 22 C 0.089 3.911 23 N -0.486 5.486 24 C 0.120 3.880 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.011 0.989 33 H 0.258 0.742 34 H 0.066 0.934 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.050 0.950 40 H 0.370 0.630 41 H 0.038 0.962 42 H 0.109 0.891 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.150 0.850 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.032 2.879 19.695 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.050 4.050 3 C -0.171 4.171 4 C -0.004 4.004 5 C -0.542 4.542 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.237 5.237 15 C -0.078 4.078 16 C 0.004 3.996 17 O -0.358 6.358 18 C -0.052 4.052 19 C -0.113 4.113 20 C -0.101 4.101 21 C -0.196 4.196 22 C -0.068 4.068 23 N -0.194 5.194 24 C -0.037 4.037 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.216 0.784 41 H 0.056 0.944 42 H 0.127 0.873 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.167 0.833 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.082 3.662 19.181 19.770 hybrid contribution 1.079 -1.034 -0.385 1.543 sum -2.003 2.627 18.796 19.084 Atomic orbital electron populations 1.22039 0.96391 0.99197 1.01535 1.20539 0.94725 0.96125 0.93608 1.21568 0.99238 0.95831 1.00437 1.19136 0.95901 0.94981 0.90401 1.21242 1.30615 1.11801 0.90559 0.92234 1.25004 0.95447 0.95088 0.99017 1.69965 1.37474 1.23271 1.23219 0.86685 0.79307 0.79424 0.83137 1.20825 1.21449 1.19880 1.22420 0.99395 0.94885 0.89773 1.61909 1.00273 1.57680 1.03874 1.22209 0.93489 0.96731 0.95414 1.22175 0.95468 0.82458 0.99483 1.86607 1.38221 1.15961 1.95057 1.21474 0.91492 0.92869 0.99389 1.20817 0.98065 0.98250 0.94136 1.21452 0.97053 0.98030 0.93526 1.22036 0.99845 0.96819 1.00929 1.22683 0.96165 0.97021 0.90965 1.67716 1.20443 1.24830 1.06394 1.22770 0.91826 0.88936 1.00212 0.93771 0.91552 0.94414 0.94803 0.93280 0.92811 0.96955 0.97055 0.93236 0.91588 0.94827 0.90559 0.93900 0.94327 0.93139 0.78442 0.94359 0.87296 0.85619 0.85333 0.83292 0.82526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 6.71 37.16 0.25 -2.22 16 2 C -0.05 -0.96 0.60 -154.50 -0.09 -1.06 16 3 C -0.11 -2.22 8.02 37.16 0.30 -1.92 16 4 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 5 C -0.50 -13.68 7.57 -34.44 -0.26 -13.94 16 6 H 0.06 1.59 5.74 -52.49 -0.30 1.29 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 13 C 0.06 1.03 3.98 -3.82 -0.02 1.01 16 14 N -0.51 -7.32 3.24 -236.07 -0.76 -8.08 16 15 C 0.05 0.61 5.11 -3.82 -0.02 0.59 16 16 C 0.08 0.99 7.18 37.16 0.27 1.25 16 17 O -0.55 -7.33 13.62 -35.23 -0.48 -7.81 16 18 C 0.08 0.99 4.20 -4.98 -0.02 0.96 16 19 C -0.11 -1.42 5.19 -104.48 -0.54 -1.96 16 20 C -0.07 -0.82 8.46 -39.28 -0.33 -1.16 16 21 C -0.18 -1.81 10.11 -39.44 -0.40 -2.21 16 22 C 0.09 1.03 11.18 -17.55 -0.20 0.83 16 23 N -0.49 -6.95 10.36 -13.25 -0.14 -7.09 16 24 C 0.12 1.70 10.76 -17.55 -0.19 1.51 16 25 H 0.04 0.71 4.39 -51.93 -0.23 0.49 16 26 H 0.07 1.36 6.36 -51.93 -0.33 1.03 16 27 H 0.04 0.65 7.25 -51.93 -0.38 0.28 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 1.03 6.79 -51.93 -0.35 0.68 16 30 H 0.05 1.01 7.43 -51.93 -0.39 0.62 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.10 6.15 -51.93 -0.32 0.78 16 35 H 0.03 0.56 7.85 -51.93 -0.41 0.15 16 36 H 0.08 0.91 5.64 -51.93 -0.29 0.62 16 37 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 38 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.65 6.47 -51.93 -0.34 0.32 16 40 H 0.37 3.40 9.12 45.56 0.42 3.81 16 41 H 0.04 0.45 7.94 -51.93 -0.41 0.04 16 42 H 0.11 1.51 4.04 -51.93 -0.21 1.30 16 43 H 0.13 1.15 7.49 -52.48 -0.39 0.75 16 44 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 45 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 46 H 0.16 2.21 6.15 -52.48 -0.32 1.89 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -31.84 353.81 -8.14 -39.98 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.34 Total: 3.22 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -1.46 Total: -16.15 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: -0.17 Total: -41.18 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.48 Total: -7.81 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.84 -8.14 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093086529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.599 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds