Wall clock time and date at job start Tue Mar 31 2020 07:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47075 * 2 1 4 4 C 1.52998 * 109.46934 * 65.75865 * 3 2 1 5 5 C 1.53001 * 109.47189 * 65.14766 * 4 3 2 6 6 C 1.53001 * 109.46650 * 185.75956 * 3 2 1 7 7 N 1.46498 * 109.47251 * 64.22801 * 6 3 2 8 8 C 1.46494 * 119.99893 * 262.86060 * 7 6 3 9 9 C 1.50695 * 109.47451 * 270.00238 * 8 7 6 10 10 H 1.08000 * 119.99839 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00286 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99537 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00246 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46939 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47119 * 120.00258 * 13 11 9 16 16 H 1.48495 * 109.47510 * 240.00538 * 13 11 9 17 17 C 1.34774 * 120.00013 * 82.86552 * 7 6 3 18 18 O 1.21694 * 119.99871 * 181.12354 * 17 7 6 19 19 C 1.46675 * 120.00232 * 1.12618 * 17 7 6 20 20 C 1.37877 * 126.23482 * 349.75405 * 19 17 7 21 21 C 1.39830 * 107.08874 * 179.97438 * 20 19 17 22 22 C 1.35453 * 107.86298 * 359.97438 * 21 20 19 23 23 N 1.35527 * 108.87532 * 0.02562 * 22 21 20 24 24 C 1.46500 * 125.68070 * 180.02562 * 23 22 21 25 25 H 1.09008 * 109.47245 * 64.83446 * 1 2 3 26 26 H 1.08993 * 109.47233 * 184.83808 * 1 2 3 27 27 H 1.08995 * 109.46945 * 304.84248 * 1 2 3 28 28 H 1.09004 * 109.46678 * 240.00290 * 2 1 3 29 29 H 1.08990 * 109.47226 * 120.00562 * 2 1 3 30 30 H 1.09004 * 109.47151 * 305.75927 * 3 2 1 31 31 H 1.08997 * 109.46810 * 185.14478 * 4 3 2 32 32 H 1.09000 * 109.47215 * 305.14655 * 4 3 2 33 33 H 1.08995 * 109.47123 * 304.92966 * 5 4 3 34 34 H 1.09000 * 109.46963 * 64.92077 * 5 4 3 35 35 H 1.08994 * 109.47404 * 184.92503 * 5 4 3 36 36 H 1.08999 * 109.47133 * 304.22288 * 6 3 2 37 37 H 1.09005 * 109.46496 * 184.22707 * 6 3 2 38 38 H 1.09002 * 109.47046 * 30.00150 * 8 7 6 39 39 H 1.09005 * 109.47053 * 149.99906 * 8 7 6 40 40 H 0.97004 * 120.00011 * 179.97438 * 12 11 9 41 41 H 1.08001 * 126.45025 * 359.71055 * 20 19 17 42 42 H 1.07995 * 126.06864 * 179.97438 * 21 20 19 43 43 H 1.08000 * 125.56286 * 180.02562 * 22 21 20 44 44 H 1.09006 * 109.46881 * 274.64413 * 24 23 22 45 45 H 1.08991 * 109.47564 * 34.64313 * 24 23 22 46 46 H 1.09003 * 109.47319 * 154.65249 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6516 2.1207 1.3153 5 6 2.3786 1.4377 2.4754 6 6 3.5632 1.4448 -0.1448 7 7 3.9306 0.8870 -1.4486 8 6 4.3168 -0.5217 -1.5600 9 6 5.8057 -0.6513 -1.3671 10 1 6.4045 0.2278 -1.1797 11 6 6.4035 -1.8923 -1.4287 12 7 5.6743 -2.9628 -1.6563 13 14 8.2492 -2.0528 -1.1902 14 1 8.8361 -0.7098 -0.9510 15 1 8.5232 -2.9275 -0.0218 16 1 8.8557 -2.6487 -2.4077 17 6 3.9136 1.6699 -2.5455 18 8 4.1990 1.2015 -3.6318 19 6 3.5510 3.0864 -2.4301 20 6 3.0193 3.7035 -1.3176 21 6 2.8294 5.0494 -1.6457 22 6 3.2399 5.2273 -2.9243 23 7 3.6803 4.0421 -3.4123 24 6 4.2074 3.8159 -4.7603 25 1 -0.3634 0.4370 -0.9302 26 1 -0.3633 -1.0239 0.0867 27 1 -0.3633 0.5871 0.8434 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 1.5949 1.9853 -0.8340 31 1 1.9339 3.1729 1.2787 32 1 0.5747 2.0383 1.4625 33 1 2.1653 0.3690 2.4591 34 1 3.4524 1.5953 2.3744 35 1 2.0362 1.8622 3.4191 36 1 4.0043 0.8393 0.6470 37 1 3.9336 2.4672 -0.0695 38 1 3.7996 -1.1018 -0.7957 39 1 4.0443 -0.8962 -2.5468 40 1 6.0949 -3.8358 -1.7000 41 1 2.7886 3.2346 -0.3725 42 1 2.4270 5.8118 -0.9952 43 1 3.2194 6.1612 -3.4664 44 1 3.3816 3.6264 -5.4462 45 1 4.7569 4.6981 -5.0884 46 1 4.8755 2.9547 -4.7495 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104544923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:57 Heat of formation + Delta-G solvation = 25.810540 kcal Electronic energy + Delta-G solvation = -25082.263450 eV Core-core repulsion = 21780.633902 eV Total energy + Delta-G solvation = -3301.629548 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.22453 -38.84467 -37.30127 -34.29551 -32.88844 -32.23643 -31.13625 -29.58215 -28.06538 -26.73613 -26.14887 -24.19092 -23.41154 -23.05365 -20.76501 -20.30365 -19.11073 -18.33920 -16.87567 -16.47708 -15.58495 -15.40087 -15.16396 -15.09107 -14.35797 -14.14228 -13.90272 -13.76246 -13.16125 -12.93074 -12.85519 -12.71002 -12.52078 -12.22584 -12.14954 -11.94054 -11.83406 -11.74042 -11.28620 -11.18039 -10.94941 -10.94884 -10.67138 -10.64616 -10.39429 -10.14264 -10.04371 -9.90838 -9.54512 -8.98371 -8.44663 -8.41735 -7.92291 -7.56108 -6.03383 -4.07668 1.96500 3.00613 3.05131 3.29926 3.37529 3.42105 4.01056 4.09707 4.46285 4.99382 5.01371 5.04694 5.09605 5.18174 5.30266 5.37404 5.42150 5.48886 5.54887 5.61228 5.64900 5.69058 5.75659 5.87929 5.92319 5.97974 6.03953 6.08919 6.15202 6.29179 6.34765 6.38283 6.39906 6.46097 6.52005 6.69945 6.83840 6.97448 7.18600 7.29049 7.44512 7.49928 7.59271 7.93758 8.25099 8.43766 8.91195 9.10443 9.57269 11.04417 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.006667 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.365585 B = 4198.836784 C = 5732.086472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.115 4.115 4 C -0.120 4.120 5 C -0.159 4.159 6 C 0.093 3.907 7 N -0.575 5.575 8 C 0.247 3.753 9 C -0.525 4.525 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.896 3.104 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.573 3.427 18 O -0.554 6.554 19 C -0.031 4.031 20 C -0.184 4.184 21 C -0.213 4.213 22 C -0.005 4.005 23 N -0.413 5.413 24 C 0.067 3.933 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.262 0.738 41 H 0.177 0.823 42 H 0.136 0.864 43 H 0.161 0.839 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.781 13.905 3.626 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.135 4.135 4 C -0.158 4.158 5 C -0.216 4.216 6 C -0.031 4.031 7 N -0.305 5.305 8 C 0.129 3.871 9 C -0.564 4.564 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 C 0.361 3.639 18 O -0.434 6.434 19 C -0.145 4.145 20 C -0.209 4.209 21 C -0.237 4.237 22 C -0.139 4.139 23 N -0.086 5.086 24 C -0.074 4.074 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.194 0.806 42 H 0.154 0.846 43 H 0.178 0.822 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.448 13.322 2.670 16.000 hybrid contribution 1.031 -0.051 0.046 1.033 sum -7.417 13.272 2.717 15.444 Atomic orbital electron populations 1.21812 0.96625 1.01084 1.01193 1.21661 0.95008 0.96155 1.03217 1.21862 0.96448 0.97225 0.97956 1.21593 1.00567 0.99169 0.94444 1.21905 1.00993 1.01300 0.97397 1.22227 0.93719 1.00448 0.86662 1.47874 1.64118 1.12860 1.05609 1.19380 0.95218 0.73781 0.98756 1.21497 0.92838 0.93133 1.48933 0.92415 1.24913 0.98307 0.95645 0.95153 1.69940 1.35453 0.98484 1.49456 0.86473 0.85378 0.78059 0.77709 1.19827 1.20944 1.20934 1.16968 0.78421 0.83624 0.84906 1.90732 1.50880 1.75103 1.26693 1.20559 1.12280 0.91490 0.90199 1.22716 1.04518 0.94457 0.99228 1.20820 1.09853 0.97164 0.95901 1.21875 1.06069 0.89460 0.96511 1.43859 1.46065 1.07402 1.11319 1.22226 1.00625 1.04160 0.80400 0.93265 0.93168 0.92901 0.90810 0.91637 0.90225 0.91938 0.91591 0.92070 0.92174 0.93297 0.89610 0.89555 0.94259 0.93911 0.92807 0.80640 0.84623 0.82182 0.90909 0.90604 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.79 37.16 0.36 -1.55 16 2 C -0.12 -1.87 4.69 -26.73 -0.13 -1.99 16 3 C -0.12 -1.64 1.29 -90.62 -0.12 -1.76 16 4 C -0.12 -1.34 5.38 -26.73 -0.14 -1.48 16 5 C -0.16 -1.76 9.12 37.16 0.34 -1.42 16 6 C 0.09 1.58 3.75 -4.04 -0.02 1.57 16 7 N -0.58 -12.45 2.14 -176.61 -0.38 -12.83 16 8 C 0.25 6.41 4.19 -5.20 -0.02 6.39 16 9 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 10 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 13 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 14 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.57 12.75 7.56 -12.86 -0.10 12.65 16 18 O -0.55 -14.11 14.31 5.19 0.07 -14.04 16 19 C -0.03 -0.57 6.67 -81.98 -0.55 -1.12 16 20 C -0.18 -2.85 7.31 -39.12 -0.29 -3.14 16 21 C -0.21 -2.84 10.81 -39.98 -0.43 -3.27 16 22 C 0.00 -0.06 11.38 -16.91 -0.19 -0.25 16 23 N -0.41 -6.58 3.16 -120.24 -0.38 -6.96 16 24 C 0.07 0.93 10.62 59.85 0.64 1.56 16 25 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.58 6.28 -51.93 -0.33 0.26 16 28 H 0.07 1.36 5.97 -51.93 -0.31 1.05 16 29 H 0.07 0.98 6.23 -51.93 -0.32 0.66 16 30 H 0.08 1.21 6.29 -51.93 -0.33 0.88 16 31 H 0.06 0.64 6.99 -51.93 -0.36 0.28 16 32 H 0.07 0.68 6.28 -51.93 -0.33 0.35 16 33 H 0.06 0.72 6.24 -51.93 -0.32 0.39 16 34 H 0.06 0.70 6.74 -51.93 -0.35 0.35 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 1.50 6.59 -51.93 -0.34 1.15 16 37 H 0.09 1.38 4.85 -51.93 -0.25 1.13 16 38 H 0.04 1.02 6.71 -51.93 -0.35 0.67 16 39 H 0.04 1.26 7.40 -51.93 -0.38 0.87 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.18 2.46 1.75 -52.49 -0.09 2.36 16 42 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.11 1.79 6.31 -51.93 -0.33 1.46 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -32.69 348.76 -7.67 -40.36 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.90 Total: 4.36 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.06 Total: -7.36 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -0.02 Total: -45.47 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.07 Total: -14.04 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.69 -7.67 -40.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104544923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.170 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds