Wall clock time and date at job start Tue Mar 31 2020 08:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35678 * 117.00209 * 2 1 4 4 N 1.32277 * 119.68256 * 359.97438 * 3 2 1 5 5 C 1.31934 * 121.64699 * 179.97438 * 4 3 2 6 6 C 1.38082 * 120.83308 * 0.02562 * 5 4 3 7 7 C 1.38791 * 119.28941 * 359.97438 * 6 5 4 8 8 C 1.38422 * 118.48140 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.43925 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47019 * 264.99827 * 9 8 7 11 11 N 1.46898 * 109.47089 * 180.02562 * 10 9 8 12 12 C 1.46900 * 110.99756 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46824 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47498 * 299.99817 * 13 12 11 15 15 C 1.52999 * 109.47418 * 60.00295 * 13 12 11 16 16 C 1.53005 * 109.46992 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.46921 * 180.02562 * 16 13 12 18 18 H 1.07996 * 120.00414 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99663 * 180.02562 * 17 16 13 20 20 N 1.31504 * 120.00394 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99840 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46984 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47527 * 119.99567 * 21 19 17 24 24 H 1.48500 * 109.47075 * 239.99876 * 21 19 17 25 25 H 1.09000 * 109.46890 * 299.99757 * 1 2 3 26 26 H 1.08999 * 109.46847 * 59.99975 * 1 2 3 27 27 H 1.09002 * 109.47112 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.58104 * 180.02562 * 5 4 3 29 29 H 1.08003 * 120.35802 * 179.97438 * 6 5 4 30 30 H 1.08000 * 120.75891 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47039 * 24.99635 * 9 8 7 32 32 H 1.08995 * 109.46773 * 144.99783 * 9 8 7 33 33 H 1.09000 * 109.47469 * 300.00448 * 10 9 8 34 34 H 1.09001 * 109.46983 * 59.99791 * 10 9 8 35 35 H 1.00901 * 110.99743 * 303.94957 * 11 10 9 36 36 H 1.09000 * 109.47193 * 299.99638 * 12 11 10 37 37 H 1.08995 * 109.47344 * 60.00358 * 12 11 10 38 38 H 1.09002 * 109.47038 * 59.99724 * 14 13 12 39 39 H 1.08993 * 109.47472 * 179.97438 * 14 13 12 40 40 H 1.09001 * 109.47068 * 300.00637 * 14 13 12 41 41 H 1.08995 * 109.47085 * 59.99536 * 15 13 12 42 42 H 1.08993 * 109.47618 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.46400 * 299.99837 * 15 13 12 44 44 H 1.09000 * 109.47071 * 299.99703 * 16 13 12 45 45 H 1.08995 * 109.47299 * 60.00320 * 16 13 12 46 46 H 0.97006 * 120.00495 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 7 1.3185 2.3143 -0.0005 5 6 1.8769 3.5096 0.0000 6 6 3.2507 3.6491 0.0005 7 6 4.0484 2.5133 0.0011 8 6 3.4322 1.2738 0.0005 9 6 4.2558 0.0117 0.0005 10 6 4.4297 -0.4837 -1.4365 11 7 5.2320 -1.7143 -1.4365 12 6 5.4195 -2.2205 -2.8027 13 6 6.2583 -3.4994 -2.7620 14 6 7.6223 -3.1952 -2.1392 15 6 5.5379 -4.5554 -1.9214 16 6 6.4542 -4.0263 -4.1851 17 6 7.2799 -5.2863 -4.1450 18 1 7.6303 -5.6725 -3.1992 19 6 7.5889 -5.9456 -5.3159 20 7 7.1627 -5.4752 -6.4675 21 14 8.6118 -7.5079 -5.2661 22 1 8.9636 -7.8245 -3.8585 23 1 7.8305 -8.6298 -5.8458 24 1 9.8548 -7.3110 -6.0543 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.2515 4.3902 -0.0001 29 1 3.6996 4.6314 0.0005 30 1 5.1253 2.5948 0.0019 31 1 5.2342 0.2164 0.4352 32 1 3.7492 -0.7527 0.5896 33 1 3.4514 -0.6883 -1.8713 34 1 4.9363 0.2808 -2.0256 35 1 6.1198 -1.5671 -0.9800 36 1 4.4478 -2.4368 -3.2466 37 1 5.9332 -1.4684 -3.4015 38 1 7.4832 -2.8195 -1.1255 39 1 8.2197 -4.1064 -2.1098 40 1 8.1356 -2.4429 -2.7381 41 1 4.5662 -4.7721 -2.3651 42 1 6.1356 -5.4663 -1.8920 43 1 5.3988 -4.1797 -0.9077 44 1 5.4827 -4.2430 -4.6292 45 1 6.9677 -3.2739 -4.7836 46 1 7.3797 -5.9392 -7.2913 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289855430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:14 Heat of formation + Delta-G solvation = -23.369601 kcal Electronic energy + Delta-G solvation = -23104.653268 eV Core-core repulsion = 19800.891109 eV Total energy + Delta-G solvation = -3303.762159 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.92334 -38.04627 -37.70902 -35.40909 -33.25063 -32.11672 -31.36511 -28.62585 -27.42262 -26.83935 -26.28356 -25.14403 -23.45561 -23.18461 -22.02875 -21.39597 -18.54061 -17.80785 -17.32597 -16.23137 -16.21042 -15.82815 -15.52301 -14.88465 -14.60248 -14.43196 -14.12137 -13.75868 -13.60217 -13.45912 -13.21387 -12.77539 -12.54005 -12.29227 -12.11255 -11.95418 -11.70452 -11.52628 -11.41801 -11.12610 -10.93610 -10.76574 -10.70901 -10.45405 -10.22913 -10.10378 -9.94993 -9.85515 -9.63985 -8.98710 -8.79865 -8.57701 -8.29458 -8.02954 -5.93686 -3.93563 0.88363 1.03892 2.92808 3.34129 3.41908 3.45528 3.51029 4.04030 4.40525 4.52407 4.56563 4.72884 4.91630 4.99672 5.10149 5.13105 5.16999 5.32157 5.37524 5.42235 5.44595 5.59799 5.74855 5.76783 5.82020 5.91785 6.01368 6.10274 6.17850 6.23937 6.32038 6.39437 6.55963 6.71463 6.83670 6.87663 7.04668 7.25378 7.27675 7.31057 7.45339 7.60506 7.72358 7.76288 7.89772 8.07045 8.51690 9.12191 9.69127 11.18078 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.029945 B = 0.002609 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.815217 B =10728.012630 C =11035.929156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.298 6.298 3 C 0.324 3.676 4 N -0.541 5.541 5 C 0.130 3.870 6 C -0.210 4.210 7 C -0.043 4.043 8 C -0.145 4.145 9 C -0.066 4.066 10 C 0.067 3.933 11 N -0.686 5.686 12 C 0.071 3.929 13 C -0.058 4.058 14 C -0.129 4.129 15 C -0.116 4.116 16 C 0.033 3.967 17 C -0.505 4.505 18 H 0.060 0.940 19 C 0.053 3.947 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.286 1.286 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.157 0.843 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.022 0.978 35 H 0.337 0.663 36 H 0.065 0.935 37 H 0.022 0.978 38 H 0.033 0.967 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.015 0.985 45 H 0.012 0.988 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.624 17.831 14.859 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.204 6.204 3 C 0.145 3.855 4 N -0.265 5.265 5 C -0.026 4.026 6 C -0.230 4.230 7 C -0.068 4.068 8 C -0.148 4.148 9 C -0.104 4.104 10 C -0.062 4.062 11 N -0.317 5.317 12 C -0.058 4.058 13 C -0.059 4.059 14 C -0.186 4.186 15 C -0.173 4.173 16 C -0.005 4.005 17 C -0.543 4.543 18 H 0.078 0.922 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.115 0.885 28 H 0.174 0.826 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.030 0.970 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.978 17.022 14.798 25.084 hybrid contribution 1.781 0.123 -0.621 1.890 sum -9.197 17.145 14.177 24.073 Atomic orbital electron populations 1.22866 0.77354 1.03122 1.02154 1.86321 1.22681 1.24082 1.87355 1.19713 0.88966 0.84789 0.92077 1.67329 1.40953 0.98865 1.19307 1.22360 0.92935 0.93613 0.93653 1.21966 0.94934 0.99742 1.06405 1.21396 1.00663 0.90826 0.93932 1.19951 0.91302 0.96959 1.06608 1.20384 0.98636 0.93256 0.98162 1.21853 0.98813 0.90753 0.94827 1.60537 1.22069 1.29416 1.19692 1.22096 0.99852 0.96476 0.87344 1.20627 0.93264 0.92793 0.99193 1.21768 0.97619 1.01570 0.97649 1.21592 0.99285 0.98407 0.98013 1.19133 0.96820 0.95648 0.88864 1.21284 1.31869 1.08615 0.92552 0.92221 1.25022 0.96351 0.97581 0.95721 1.69975 1.46382 1.39874 0.97576 0.86611 0.80110 0.83728 0.78007 1.19764 1.21167 1.21225 0.92513 0.92392 0.88464 0.82581 0.84631 0.84223 0.91108 0.89389 0.91088 0.95936 0.84461 0.91637 0.95997 0.94777 0.91733 0.94166 0.94204 0.92746 0.93837 0.96693 0.96954 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.30 -3.65 9.63 -18.73 -0.18 -3.83 16 3 C 0.32 3.92 7.47 -17.13 -0.13 3.79 16 4 N -0.54 -6.14 9.22 -13.33 -0.12 -6.26 16 5 C 0.13 1.14 11.18 -17.56 -0.20 0.94 16 6 C -0.21 -1.64 10.11 -39.43 -0.40 -2.04 16 7 C -0.04 -0.38 9.83 -39.31 -0.39 -0.77 16 8 C -0.14 -1.59 5.17 -104.32 -0.54 -2.13 16 9 C -0.07 -0.73 5.35 -27.88 -0.15 -0.88 16 10 C 0.07 0.88 5.67 -3.83 -0.02 0.86 16 11 N -0.69 -10.21 5.71 -113.78 -0.65 -10.86 16 12 C 0.07 1.27 4.65 -3.82 -0.02 1.25 16 13 C -0.06 -1.18 0.60 -154.51 -0.09 -1.28 16 14 C -0.13 -2.41 7.89 37.16 0.29 -2.11 16 15 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 16 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 17 C -0.50 -13.94 7.65 -34.44 -0.26 -14.20 16 18 H 0.06 1.61 5.68 -52.49 -0.30 1.31 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 21 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 26 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 29 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 30 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.09 1.07 7.71 -51.93 -0.40 0.67 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.34 4.68 6.77 -39.29 -0.27 4.41 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.03 0.54 6.57 -51.93 -0.34 0.19 16 39 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 43 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 44 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -31.43 369.80 -8.28 -39.71 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.86 Total: 0.30 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -0.76 Total: -14.98 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.04 Total: -43.50 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.18 Total: -3.83 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.43 -8.28 -39.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289855430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.342 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds