Wall clock time and date at job start Tue Mar 31 2020 08:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35678 * 117.00209 * 2 1 4 4 N 1.32277 * 119.68256 * 359.97438 * 3 2 1 5 5 C 1.31934 * 121.64699 * 179.97438 * 4 3 2 6 6 C 1.38082 * 120.83308 * 0.02562 * 5 4 3 7 7 C 1.38791 * 119.28941 * 359.97438 * 6 5 4 8 8 C 1.38422 * 118.48140 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.43925 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47019 * 264.99827 * 9 8 7 11 11 N 1.46898 * 109.47089 * 180.02562 * 10 9 8 12 12 C 1.46900 * 110.99756 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46824 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47498 * 299.99817 * 13 12 11 15 15 C 1.52999 * 109.47418 * 60.00295 * 13 12 11 16 16 C 1.53005 * 109.46992 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.46921 * 180.02562 * 16 13 12 18 18 H 1.07996 * 120.00414 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99663 * 180.02562 * 17 16 13 20 20 N 1.31504 * 120.00394 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99840 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46984 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47527 * 119.99567 * 21 19 17 24 24 H 1.48500 * 109.47075 * 239.99876 * 21 19 17 25 25 H 1.09000 * 109.46890 * 299.99757 * 1 2 3 26 26 H 1.08999 * 109.46847 * 59.99975 * 1 2 3 27 27 H 1.09002 * 109.47112 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.58104 * 180.02562 * 5 4 3 29 29 H 1.08003 * 120.35802 * 179.97438 * 6 5 4 30 30 H 1.08000 * 120.75891 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47039 * 24.99635 * 9 8 7 32 32 H 1.08995 * 109.46773 * 144.99783 * 9 8 7 33 33 H 1.09000 * 109.47469 * 300.00448 * 10 9 8 34 34 H 1.09001 * 109.46983 * 59.99791 * 10 9 8 35 35 H 1.00901 * 110.99743 * 303.94957 * 11 10 9 36 36 H 1.09000 * 109.47193 * 299.99638 * 12 11 10 37 37 H 1.08995 * 109.47344 * 60.00358 * 12 11 10 38 38 H 1.09002 * 109.47038 * 59.99724 * 14 13 12 39 39 H 1.08993 * 109.47472 * 179.97438 * 14 13 12 40 40 H 1.09001 * 109.47068 * 300.00637 * 14 13 12 41 41 H 1.08995 * 109.47085 * 59.99536 * 15 13 12 42 42 H 1.08993 * 109.47618 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.46400 * 299.99837 * 15 13 12 44 44 H 1.09000 * 109.47071 * 299.99703 * 16 13 12 45 45 H 1.08995 * 109.47299 * 60.00320 * 16 13 12 46 46 H 0.97006 * 120.00495 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 7 1.3185 2.3143 -0.0005 5 6 1.8769 3.5096 0.0000 6 6 3.2507 3.6491 0.0005 7 6 4.0484 2.5133 0.0011 8 6 3.4322 1.2738 0.0005 9 6 4.2558 0.0117 0.0005 10 6 4.4297 -0.4837 -1.4365 11 7 5.2320 -1.7143 -1.4365 12 6 5.4195 -2.2205 -2.8027 13 6 6.2583 -3.4994 -2.7620 14 6 7.6223 -3.1952 -2.1392 15 6 5.5379 -4.5554 -1.9214 16 6 6.4542 -4.0263 -4.1851 17 6 7.2799 -5.2863 -4.1450 18 1 7.6303 -5.6725 -3.1992 19 6 7.5889 -5.9456 -5.3159 20 7 7.1627 -5.4752 -6.4675 21 14 8.6118 -7.5079 -5.2661 22 1 8.9636 -7.8245 -3.8585 23 1 7.8305 -8.6298 -5.8458 24 1 9.8548 -7.3110 -6.0543 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.2515 4.3902 -0.0001 29 1 3.6996 4.6314 0.0005 30 1 5.1253 2.5948 0.0019 31 1 5.2342 0.2164 0.4352 32 1 3.7492 -0.7527 0.5896 33 1 3.4514 -0.6883 -1.8713 34 1 4.9363 0.2808 -2.0256 35 1 6.1198 -1.5671 -0.9800 36 1 4.4478 -2.4368 -3.2466 37 1 5.9332 -1.4684 -3.4015 38 1 7.4832 -2.8195 -1.1255 39 1 8.2197 -4.1064 -2.1098 40 1 8.1356 -2.4429 -2.7381 41 1 4.5662 -4.7721 -2.3651 42 1 6.1356 -5.4663 -1.8920 43 1 5.3988 -4.1797 -0.9077 44 1 5.4827 -4.2430 -4.6292 45 1 6.9677 -3.2739 -4.7836 46 1 7.3797 -5.9392 -7.2913 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289855430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:12 Heat of formation + Delta-G solvation = -43.868030 kcal Electronic energy + Delta-G solvation = -23105.542146 eV Core-core repulsion = 19800.891109 eV Total energy + Delta-G solvation = -3304.651038 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65665 -39.24765 -38.78787 -36.63859 -34.73253 -33.69459 -32.17270 -29.77141 -28.73893 -28.12675 -27.87142 -26.58966 -24.84668 -23.90899 -23.53894 -22.30980 -19.50796 -19.26042 -18.32909 -18.07717 -17.06647 -16.74834 -16.66160 -16.44632 -15.74208 -15.58029 -15.19595 -15.05930 -14.74050 -14.48956 -14.22069 -14.16540 -13.88879 -13.76568 -13.62821 -13.00580 -12.91244 -12.72379 -12.67090 -12.56921 -12.42997 -12.24133 -12.16194 -12.11944 -11.89961 -11.85109 -11.36013 -10.87039 -10.80299 -10.63609 -10.55533 -10.50906 -9.34600 -9.28046 -8.13558 -6.20606 0.17745 0.34719 1.40662 1.41597 1.54003 2.21081 2.44234 2.78929 3.20407 3.22478 3.45314 3.88668 4.06939 4.11119 4.12060 4.20521 4.27513 4.38990 4.41505 4.41608 4.43340 4.45630 4.62251 4.71105 4.75279 4.77384 4.84005 4.96141 5.00453 5.10376 5.17855 5.20455 5.23875 5.24740 5.37494 5.52843 5.55127 5.57424 5.59848 5.67065 5.88543 5.93549 6.08283 6.29681 6.37477 6.58715 6.89178 6.94851 7.46783 8.99169 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.029945 B = 0.002609 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.815217 B =10728.012630 C =11035.929156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.320 6.320 3 C 0.298 3.702 4 N -0.562 5.562 5 C 0.120 3.880 6 C -0.202 4.202 7 C -0.043 4.043 8 C -0.164 4.164 9 C -0.054 4.054 10 C 0.073 3.927 11 N -0.681 5.681 12 C 0.083 3.917 13 C -0.055 4.055 14 C -0.122 4.122 15 C -0.107 4.107 16 C 0.039 3.961 17 C -0.512 4.512 18 H 0.067 0.933 19 C -0.006 4.006 20 N -0.939 5.939 21 Si 0.957 3.043 22 H -0.260 1.260 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.113 0.887 28 H 0.185 0.815 29 H 0.169 0.831 30 H 0.164 0.836 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.028 0.972 35 H 0.347 0.653 36 H 0.049 0.951 37 H 0.017 0.983 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.037 0.963 41 H 0.027 0.973 42 H 0.040 0.960 43 H 0.068 0.932 44 H -0.019 1.019 45 H -0.016 1.016 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.577 19.019 16.837 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.227 6.227 3 C 0.120 3.880 4 N -0.286 5.286 5 C -0.035 4.035 6 C -0.222 4.222 7 C -0.069 4.069 8 C -0.167 4.167 9 C -0.092 4.092 10 C -0.056 4.056 11 N -0.314 5.314 12 C -0.046 4.046 13 C -0.055 4.055 14 C -0.179 4.179 15 C -0.164 4.164 16 C 0.001 3.999 17 C -0.550 4.550 18 H 0.085 0.915 19 C -0.203 4.203 20 N -0.581 5.581 21 Si 0.783 3.217 22 H -0.183 1.183 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.202 0.798 29 H 0.186 0.814 30 H 0.182 0.818 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.167 0.833 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.000 1.000 45 H 0.002 0.998 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.931 18.218 16.803 26.699 hybrid contribution 1.394 -0.123 -1.242 1.871 sum -8.537 18.095 15.561 25.347 Atomic orbital electron populations 1.22971 0.76394 1.04151 1.02029 1.86277 1.23855 1.24868 1.87717 1.19984 0.89665 0.84945 0.93421 1.67337 1.41652 0.99559 1.20017 1.22975 0.94171 0.93612 0.92729 1.22353 0.94472 1.00939 1.04438 1.21767 1.02058 0.90257 0.92777 1.20051 0.90947 0.97686 1.08024 1.20225 0.99605 0.93127 0.96223 1.21800 0.97375 0.89923 0.96510 1.60440 1.22753 1.30687 1.17474 1.21791 0.98375 0.95335 0.89102 1.20494 0.95142 0.93974 0.95928 1.21682 0.95843 1.00862 0.99516 1.21501 0.98163 0.97628 0.99110 1.19023 0.94317 0.94713 0.91832 1.21652 1.31456 1.09063 0.92808 0.91456 1.25945 0.97752 1.01175 0.95403 1.70119 1.48002 1.41630 0.98339 0.85505 0.78284 0.79320 0.78611 1.18337 1.20927 1.20766 0.92235 0.92853 0.86892 0.79830 0.81360 0.81819 0.89019 0.90749 0.93068 0.95421 0.83292 0.93207 0.96443 0.91122 0.93374 0.94367 0.95425 0.94137 0.91283 1.00038 0.99760 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.38 113.37 1.18 1.92 16 2 O -0.32 -8.01 9.63 -89.95 -0.87 -8.88 16 3 C 0.30 7.15 7.47 84.78 0.63 7.78 16 4 N -0.56 -12.37 9.22 -308.95 -2.85 -15.21 16 5 C 0.12 1.86 11.18 84.64 0.95 2.80 16 6 C -0.20 -2.54 10.11 22.36 0.23 -2.31 16 7 C -0.04 -0.65 9.83 22.45 0.22 -0.43 16 8 C -0.16 -3.38 5.17 -19.67 -0.10 -3.49 16 9 C -0.05 -1.11 5.35 29.85 0.16 -0.95 16 10 C 0.07 1.85 5.67 86.30 0.49 2.34 16 11 N -0.68 -19.25 5.71 -513.90 -2.94 -22.18 16 12 C 0.08 2.97 4.65 86.30 0.40 3.37 16 13 C -0.05 -2.22 0.60 -52.18 -0.03 -2.26 16 14 C -0.12 -4.37 7.89 71.98 0.57 -3.80 16 15 C -0.11 -4.16 8.06 71.98 0.58 -3.58 16 16 C 0.04 2.05 4.04 29.85 0.12 2.17 16 17 C -0.51 -28.63 7.65 25.60 0.20 -28.44 16 18 H 0.07 3.60 5.68 -2.91 -0.02 3.59 16 19 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 20 N -0.94 -58.16 13.29 21.45 0.28 -57.88 16 21 Si 0.96 44.84 29.54 68.60 2.03 46.86 16 22 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 26 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 27 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 29 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 30 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 31 H 0.09 1.48 8.06 -2.39 -0.02 1.46 16 32 H 0.07 1.75 7.71 -2.39 -0.02 1.73 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.35 8.63 6.77 -89.69 -0.61 8.03 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 2.01 6.57 -2.39 -0.02 1.99 16 39 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.04 1.67 6.62 -2.39 -0.02 1.65 16 43 H 0.07 2.33 7.60 -2.39 -0.02 2.31 16 44 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 45 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 46 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 Total: -1.00 -69.76 369.80 2.05 -67.71 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.34 Total: 14.35 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 6.05 Total: -24.77 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -5.50 Total: -95.28 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.87 Total: -8.88 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -69.76 2.05 -67.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289855430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.843 kcal (2) G-P(sol) polarization free energy of solvation -69.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds