Wall clock time and date at job start Tue Mar 31 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.47485 * 2 1 4 4 C 1.36768 * 125.80411 * 270.00245 * 3 2 1 5 5 C 1.47263 * 126.93911 * 359.97436 * 4 3 2 6 6 O 1.21623 * 120.00126 * 359.71320 * 5 4 3 7 7 N 1.34777 * 119.99630 * 179.71006 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72408 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52998 * 109.46876 * 299.99984 * 9 8 7 11 11 C 1.53005 * 109.46795 * 60.00011 * 9 8 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 9 8 7 13 13 C 1.50703 * 109.46940 * 179.97438 * 12 9 8 14 14 H 1.08001 * 120.00043 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00213 * 180.02562 * 13 12 9 16 16 N 1.31516 * 120.00298 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99907 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47136 * 89.99860 * 17 15 13 19 19 H 1.48503 * 109.47098 * 209.99926 * 17 15 13 20 20 H 1.48504 * 109.46915 * 329.99781 * 17 15 13 21 21 C 1.46690 * 106.11787 * 179.71569 * 4 3 2 22 22 C 1.34493 * 106.32943 * 0.25821 * 21 4 3 23 23 N 1.34664 * 125.79869 * 90.16450 * 3 2 1 24 24 C 1.46499 * 124.85268 * 0.02562 * 23 3 2 25 25 H 1.08997 * 109.47037 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46860 * 300.00090 * 1 2 3 27 27 H 1.08999 * 109.46876 * 59.99519 * 1 2 3 28 28 H 1.09004 * 109.46860 * 239.99910 * 2 1 3 29 29 H 1.08999 * 109.46876 * 120.00481 * 2 1 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 31 31 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 32 32 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 33 33 H 1.08996 * 109.47009 * 60.00253 * 10 9 8 34 34 H 1.09004 * 109.46783 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47156 * 300.00070 * 10 9 8 36 36 H 1.09000 * 109.47011 * 60.00556 * 11 9 8 37 37 H 1.09004 * 109.46658 * 180.02562 * 11 9 8 38 38 H 1.08996 * 109.47069 * 299.99740 * 11 9 8 39 39 H 1.08995 * 109.47672 * 299.99669 * 12 9 8 40 40 H 1.09007 * 109.47288 * 60.00489 * 12 9 8 41 41 H 0.96997 * 120.00401 * 179.97438 * 16 15 13 42 42 H 1.07994 * 126.83697 * 180.29986 * 21 4 3 43 43 H 1.08002 * 125.56817 * 179.97438 * 22 21 4 44 44 H 1.09003 * 109.47017 * 270.30988 * 24 23 3 45 45 H 1.08993 * 109.47396 * 30.31257 * 24 23 3 46 46 H 1.09001 * 109.47185 * 150.31452 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.2992 2.1751 -1.1092 5 6 2.1540 1.7631 -2.5156 6 8 1.7639 0.6428 -2.7839 7 7 2.4533 2.6275 -3.5053 8 6 2.3146 2.2157 -4.9043 9 6 2.7217 3.3724 -5.8193 10 6 1.8182 4.5775 -5.5505 11 6 4.1771 3.7542 -5.5419 12 6 2.5774 2.9420 -7.2804 13 6 2.9778 4.0816 -8.1816 14 1 3.3030 5.0190 -7.7549 15 6 2.9289 3.9277 -9.5509 16 7 3.2788 4.9220 -10.3373 17 14 2.3657 2.3067 -10.2890 18 1 0.8947 2.3386 -10.4892 19 1 3.0388 2.0976 -11.5961 20 1 2.7161 1.1954 -9.3684 21 6 2.7531 3.4795 -0.6151 22 6 2.7290 3.4046 0.7275 23 7 2.2980 2.1623 1.0922 24 6 2.1405 1.7032 2.4745 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.7647 3.5209 -3.2914 31 1 2.9583 1.3571 -5.0959 32 1 1.2778 1.9437 -5.1020 33 1 1.9214 4.8840 -4.5096 34 1 2.1085 5.4018 -6.2020 35 1 0.7813 4.3055 -5.7481 36 1 4.8208 2.8956 -5.7335 37 1 4.4670 4.5786 -6.1934 38 1 4.2803 4.0607 -4.5010 39 1 3.2214 2.0837 -7.4717 40 1 1.5407 2.6698 -7.4784 41 1 3.2448 4.8136 -11.3006 42 1 3.0473 4.3309 -1.2108 43 1 3.0060 4.1978 1.4061 44 1 1.1306 1.9267 2.8186 45 1 2.3108 0.6277 2.5218 46 1 2.8627 2.2138 3.1115 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356491602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:38 Heat of formation + Delta-G solvation = -12.355685 kcal Electronic energy + Delta-G solvation = -23680.256117 eV Core-core repulsion = 20376.971557 eV Total energy + Delta-G solvation = -3303.284560 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.51299 -39.06222 -36.99937 -33.98917 -33.30391 -32.90331 -31.93763 -28.52015 -27.84275 -27.20761 -26.46660 -25.70961 -23.71064 -22.59245 -21.67067 -19.95800 -19.25271 -17.98544 -17.33819 -16.78356 -15.86579 -15.63596 -15.38543 -14.77556 -14.51888 -14.19332 -14.05767 -13.59726 -13.47176 -13.40952 -13.21293 -12.91519 -12.73344 -12.61188 -12.38564 -12.19979 -12.17550 -12.01537 -11.52383 -11.17176 -11.04425 -11.01001 -10.94574 -10.54917 -10.39811 -9.88840 -9.74231 -9.65351 -9.32133 -8.92744 -8.79709 -8.57070 -8.48685 -8.21814 -5.99589 -3.96363 1.76859 2.32935 2.61150 3.35621 3.43286 3.48224 3.75830 3.78142 4.40886 4.49443 4.50327 4.71146 4.74889 4.88503 5.04294 5.21308 5.24848 5.33579 5.36881 5.40380 5.52836 5.63683 5.69366 5.74220 5.79726 5.90484 6.11679 6.13706 6.22169 6.23417 6.32499 6.42844 6.62188 6.67758 6.68079 6.86592 6.93320 7.02590 7.08161 7.09191 7.12902 7.27889 7.44352 7.82703 7.98913 8.57992 8.67286 9.04958 9.63455 11.13244 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.030080 B = 0.003190 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.620049 B = 8774.814903 C = 9418.649390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C 0.104 3.896 4 C -0.229 4.229 5 C 0.585 3.415 6 O -0.557 6.557 7 N -0.717 5.717 8 C 0.128 3.872 9 C -0.063 4.063 10 C -0.128 4.128 11 C -0.128 4.128 12 C -0.002 4.002 13 C -0.509 4.509 14 H 0.078 0.922 15 C 0.066 3.934 16 N -0.905 5.905 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.265 1.265 21 C -0.166 4.166 22 C -0.021 4.021 23 N -0.446 5.446 24 C 0.068 3.932 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.398 0.602 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.032 0.968 39 H 0.018 0.982 40 H 0.013 0.987 41 H 0.262 0.738 42 H 0.145 0.855 43 H 0.166 0.834 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 -5.215 26.981 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.012 4.012 4 C -0.239 4.239 5 C 0.373 3.627 6 O -0.438 6.438 7 N -0.368 5.368 8 C 0.005 3.995 9 C -0.063 4.063 10 C -0.186 4.186 11 C -0.185 4.185 12 C -0.040 4.040 13 C -0.547 4.547 14 H 0.096 0.904 15 C -0.135 4.135 16 N -0.545 5.545 17 Si 0.702 3.298 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.189 1.189 21 C -0.190 4.190 22 C -0.147 4.147 23 N -0.123 5.123 24 C -0.073 4.073 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.082 0.918 30 H 0.234 0.766 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.036 0.964 40 H 0.032 0.968 41 H 0.071 0.929 42 H 0.163 0.837 43 H 0.183 0.817 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.511 -6.033 26.927 27.709 hybrid contribution -0.081 -0.166 -0.371 0.414 sum -2.592 -6.200 26.557 27.394 Atomic orbital electron populations 1.21633 0.94168 1.01902 1.01952 1.20317 0.96578 0.89310 1.03948 1.20296 1.01203 0.94595 0.85138 1.20222 1.15559 0.95891 0.92253 1.17349 0.76894 0.84411 0.84012 1.90706 1.48079 1.20493 1.84506 1.45926 1.67799 1.16652 1.06384 1.21582 1.01105 0.97860 0.78940 1.20680 0.95456 0.93642 0.96550 1.21768 0.98977 0.98774 0.99042 1.21767 0.95570 1.02190 0.99022 1.19592 0.96483 0.97493 0.90436 1.21100 1.43998 0.99344 0.90239 0.90395 1.24998 0.94978 0.96179 0.97329 1.69904 1.49110 1.31514 1.03940 0.86858 0.79040 0.85261 0.78618 1.20400 1.21570 1.18945 1.22049 1.06266 0.97151 0.93559 1.21657 1.08758 0.88064 0.96240 1.43508 1.51230 1.11545 1.05995 1.22065 1.03164 1.01864 0.80240 0.92073 0.93623 0.91706 0.87490 0.91833 0.76608 0.91998 0.91999 0.94945 0.90992 0.93459 0.93451 0.90988 0.94944 0.96375 0.96832 0.92855 0.83710 0.81715 0.90814 0.89739 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.90 37.16 0.37 -1.01 16 2 C -0.06 -0.68 5.58 -27.88 -0.16 -0.83 16 3 C 0.10 1.24 6.14 -81.88 -0.50 0.74 16 4 C -0.23 -3.18 6.29 -103.35 -0.65 -3.83 16 5 C 0.58 9.64 7.81 -12.59 -0.10 9.54 16 6 O -0.56 -10.61 14.81 5.26 0.08 -10.53 16 7 N -0.72 -11.24 4.95 -61.43 -0.30 -11.55 16 8 C 0.13 2.29 4.56 -4.04 -0.02 2.27 16 9 C -0.06 -1.20 0.54 -154.51 -0.08 -1.28 16 10 C -0.13 -2.32 8.05 37.16 0.30 -2.02 16 11 C -0.13 -2.32 8.05 37.16 0.30 -2.02 16 12 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 13 C -0.51 -13.85 8.20 -34.44 -0.28 -14.13 16 14 H 0.08 2.24 5.92 -52.49 -0.31 1.93 16 15 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 16 N -0.91 -27.59 13.96 55.43 0.77 -26.82 16 17 Si 0.87 21.84 27.47 -169.99 -4.67 17.17 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 21 C -0.17 -1.88 10.56 -37.49 -0.40 -2.27 16 22 C -0.02 -0.20 11.34 -16.82 -0.19 -0.39 16 23 N -0.45 -4.12 3.09 -119.88 -0.37 -4.49 16 24 C 0.07 0.34 10.81 59.85 0.65 0.99 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.11 1.40 6.46 -51.93 -0.34 1.07 16 29 H 0.06 0.51 6.92 -51.93 -0.36 0.15 16 30 H 0.40 5.51 5.29 -40.82 -0.22 5.30 16 31 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 34 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 38 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 39 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 40 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.15 1.41 7.69 -52.49 -0.40 1.00 16 43 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.35 6.88 -51.93 -0.36 -0.01 16 46 H 0.08 0.26 8.13 -51.93 -0.42 -0.16 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -33.04 361.97 -7.53 -40.57 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.54 Total: 2.79 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -0.95 Total: -12.60 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.10 Total: -42.86 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.04 -7.53 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356491602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.213 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds