Wall clock time and date at job start Tue Mar 31 2020 07:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 C 1.35447 * 126.06597 * 269.69159 * 5 4 2 7 7 N 1.35539 * 108.87004 * 179.86485 * 6 5 4 8 8 H 0.97002 * 125.67644 * 180.13419 * 7 6 5 9 9 C 1.37654 * 108.64421 * 0.40197 * 7 6 5 10 10 C 1.46674 * 126.23224 * 179.75731 * 9 7 6 11 11 O 1.21701 * 119.99637 * 179.97438 * 10 9 7 12 12 N 1.34772 * 120.00113 * 359.97438 * 10 9 7 13 13 C 1.46505 * 119.99861 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47036 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47133 * 300.00256 * 14 13 12 16 16 C 1.53001 * 109.47403 * 60.00087 * 14 13 12 17 17 C 1.50704 * 109.46997 * 180.02562 * 14 13 12 18 18 H 1.07997 * 120.00222 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99902 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99914 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 119.99939 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47266 * 59.99830 * 21 19 17 23 23 H 1.48493 * 109.47190 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47103 * 299.99911 * 21 19 17 25 25 C 1.37875 * 107.53152 * 359.75295 * 9 7 6 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 34 34 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 35 35 H 1.08003 * 125.56732 * 359.97438 * 6 5 4 36 36 H 0.96994 * 120.00245 * 0.02562 * 12 10 9 37 37 H 1.08998 * 109.47274 * 300.00217 * 13 12 10 38 38 H 1.08998 * 109.46592 * 60.00315 * 13 12 10 39 39 H 1.09000 * 109.47317 * 59.99826 * 15 14 13 40 40 H 1.08999 * 109.47430 * 180.02562 * 15 14 13 41 41 H 1.09009 * 109.46911 * 299.99734 * 15 14 13 42 42 H 1.08998 * 109.47036 * 59.99993 * 16 14 13 43 43 H 1.08996 * 109.47304 * 179.97438 * 16 14 13 44 44 H 1.09000 * 109.46880 * 300.00071 * 16 14 13 45 45 H 0.96996 * 120.00095 * 179.97438 * 20 19 17 46 46 H 1.07994 * 126.45991 * 180.02562 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6414 -2.1733 -1.1891 6 6 2.3686 -3.1779 -0.6446 7 7 1.6814 -4.3385 -0.7777 8 1 1.9774 -5.2097 -0.4704 9 6 0.4962 -4.0763 -1.4268 10 6 -0.5373 -5.0572 -1.7745 11 8 -1.5471 -4.6985 -2.3514 12 7 -0.3688 -6.3556 -1.4550 13 6 -1.4015 -7.3353 -1.8017 14 6 -0.9660 -8.7240 -1.3299 15 6 0.3489 -9.1055 -2.0128 16 6 -0.7669 -8.7081 0.1870 17 6 -2.0280 -9.7318 -1.6872 18 1 -2.9237 -9.4137 -2.1999 19 6 -1.8555 -11.0602 -1.3604 20 7 -0.7641 -11.4478 -0.7374 21 14 -3.1715 -12.3095 -1.8039 22 1 -3.3640 -12.3243 -3.2762 23 1 -2.7489 -13.6573 -1.3458 24 1 -4.4482 -11.9399 -1.1415 25 6 0.4577 -2.7235 -1.6906 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6054 -0.2616 -2.1371 34 1 3.1263 -0.6443 -1.2952 35 1 3.3371 -3.0712 -0.1787 36 1 0.4358 -6.6414 -0.9948 37 1 -2.3381 -7.0637 -1.3149 38 1 -1.5435 -7.3462 -2.8824 39 1 1.1172 -8.3766 -1.7548 40 1 0.6590 -10.0950 -1.6771 41 1 0.2070 -9.1169 -3.0936 42 1 -1.7036 -8.4363 0.6735 43 1 -0.4571 -9.6976 0.5232 44 1 0.0014 -7.9792 0.4450 45 1 -0.6429 -12.3822 -0.5072 46 1 -0.3370 -2.1895 -2.1901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412414842.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:37 Heat of formation + Delta-G solvation = -24.104799 kcal Electronic energy + Delta-G solvation = -23353.778030 eV Core-core repulsion = 20049.983990 eV Total energy + Delta-G solvation = -3303.794040 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.30900 -38.83866 -36.50326 -36.34818 -33.38911 -31.54355 -30.85234 -29.50280 -27.23367 -26.62486 -25.80403 -25.56098 -24.87647 -22.34682 -20.65323 -19.95386 -19.18798 -18.96486 -18.26951 -16.09755 -15.58454 -15.21628 -15.11642 -14.91767 -14.58567 -14.35121 -14.03628 -13.60558 -13.42866 -13.10542 -12.93319 -12.76345 -12.66527 -12.34664 -12.25732 -12.04308 -11.61031 -11.45086 -11.25145 -11.07062 -10.90439 -10.89018 -10.76726 -10.73307 -10.45244 -10.25560 -9.76982 -9.70413 -9.34579 -8.86038 -8.76585 -8.56214 -8.40317 -8.05104 -6.06531 -4.16618 1.64195 2.70709 3.14202 3.27900 3.32136 3.35624 3.67757 3.70470 4.37116 4.75634 4.80094 4.88315 5.03367 5.15068 5.20404 5.26655 5.35755 5.49502 5.57268 5.63523 5.76666 5.81532 5.84495 5.98986 6.07396 6.15939 6.20773 6.26352 6.27267 6.32361 6.43069 6.71066 6.72328 6.77254 6.86839 6.91540 6.95106 7.00040 7.28408 7.39409 7.48481 7.64523 7.94285 7.96837 8.09405 8.33063 8.60165 8.83826 9.49396 10.95042 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.039935 B = 0.002772 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.966923 B =10098.732192 C =10365.756178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.040 4.040 5 C -0.175 4.175 6 C 0.016 3.984 7 N -0.538 5.538 8 H 0.417 0.583 9 C -0.043 4.043 10 C 0.576 3.424 11 O -0.540 6.540 12 N -0.717 5.717 13 C 0.132 3.868 14 C 0.056 3.944 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.507 4.507 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.895 3.105 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.108 4.108 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.166 0.834 36 H 0.391 0.609 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.003 0.997 40 H 0.087 0.913 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.086 0.914 44 H 0.003 0.997 45 H 0.261 0.739 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.449 18.307 2.805 20.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.078 4.078 5 C -0.181 4.181 6 C -0.119 4.119 7 N -0.134 5.134 8 H 0.254 0.746 9 C -0.156 4.156 10 C 0.362 3.638 11 O -0.418 6.418 12 N -0.366 5.366 13 C 0.010 3.990 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.545 4.545 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.526 5.526 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.135 4.135 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.183 0.817 36 H 0.226 0.774 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.022 0.978 40 H 0.105 0.895 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.105 0.895 44 H 0.022 0.978 45 H 0.071 0.929 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.789 18.172 2.495 20.339 hybrid contribution -0.094 -1.333 0.209 1.352 sum 8.695 16.839 2.704 19.143 Atomic orbital electron populations 1.21876 0.95114 1.02531 1.01080 1.21098 0.96255 0.95345 0.98267 1.21863 1.00678 0.96345 1.01631 1.20004 1.00025 0.89934 0.97809 1.19340 0.96465 0.95230 1.07097 1.21750 0.99066 0.84772 1.06356 1.42014 1.15908 1.09942 1.45534 0.74596 1.20688 0.89867 0.95950 1.09099 1.17152 0.85346 0.81758 0.79501 1.90809 1.28735 1.79633 1.42631 1.46225 1.23745 1.07252 1.59424 1.21765 0.89154 0.88519 0.99583 1.18358 0.94575 0.88971 0.92556 1.21841 0.96245 1.02103 0.98654 1.21837 0.97370 1.01664 0.97958 1.20939 1.03754 0.91878 1.37931 0.92386 1.24883 0.95599 0.98275 0.94759 1.69783 1.25820 1.16476 1.40477 0.86607 0.81984 0.80209 0.78924 1.20234 1.21322 1.20241 1.21134 0.98449 0.91239 1.02635 0.93371 0.91792 0.92913 0.91425 0.92923 0.92903 0.92753 0.91346 0.91696 0.81673 0.77448 0.92444 0.92433 0.97847 0.89480 0.95300 0.95300 0.89493 0.97845 0.92915 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.92 37.16 0.33 -1.06 16 2 C -0.09 -0.75 2.91 -90.62 -0.26 -1.02 16 3 C -0.15 -1.02 9.19 37.16 0.34 -0.68 16 4 C -0.04 -0.35 5.18 -27.88 -0.14 -0.49 16 5 C -0.17 -1.93 4.78 -105.02 -0.50 -2.43 16 6 C 0.02 0.16 11.80 -16.91 -0.20 -0.04 16 7 N -0.54 -6.09 5.99 -9.39 -0.06 -6.15 16 8 H 0.42 3.85 8.19 -40.82 -0.33 3.51 16 9 C -0.04 -0.63 7.06 -81.98 -0.58 -1.21 16 10 C 0.58 10.55 7.79 -12.86 -0.10 10.45 16 11 O -0.54 -11.78 16.88 5.19 0.09 -11.69 16 12 N -0.72 -12.84 4.95 -61.62 -0.31 -13.15 16 13 C 0.13 2.80 4.50 -4.04 -0.02 2.78 16 14 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 15 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 16 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 17 C -0.51 -13.15 8.01 -34.44 -0.28 -13.42 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 20 N -0.89 -23.36 9.35 55.43 0.52 -22.84 16 21 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.11 -1.49 9.26 -39.12 -0.36 -1.85 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.71 6.41 -51.93 -0.33 0.38 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.17 1.10 8.06 -52.48 -0.42 0.67 16 36 H 0.39 6.17 5.29 -40.82 -0.22 5.95 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 40 H 0.09 2.13 6.07 -51.93 -0.31 1.82 16 41 H 0.03 0.64 8.14 -51.92 -0.42 0.21 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 44 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 45 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 46 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -29.00 364.88 -8.31 -37.31 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.69 Total: 6.76 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -1.34 Total: -11.33 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.16 Total: -42.13 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.00 -8.31 -37.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412414842.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.206 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds