Wall clock time and date at job start Tue Mar 31 2020 08:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47298 * 45.27927 * 3 2 1 5 5 N 1.46492 * 109.46885 * 165.27963 * 3 2 1 6 6 C 1.34772 * 120.00185 * 274.99866 * 5 3 2 7 7 O 1.21588 * 120.00299 * 354.92688 * 6 5 3 8 8 N 1.34783 * 120.00402 * 174.92613 * 6 5 3 9 9 C 1.46924 * 120.63417 * 184.75763 * 8 6 5 10 10 C 1.53616 * 108.54600 * 126.36387 * 9 8 6 11 11 C 1.53041 * 109.24028 * 54.85694 * 10 9 8 12 12 C 1.53003 * 109.46117 * 178.49044 * 11 10 9 13 13 C 1.50704 * 109.46707 * 295.06904 * 12 11 10 14 14 H 1.08000 * 120.00556 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99739 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00034 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00038 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47220 * 89.99680 * 17 15 13 19 19 H 1.48497 * 109.47160 * 209.99714 * 17 15 13 20 20 H 1.48497 * 109.47230 * 329.99536 * 17 15 13 21 21 C 1.53036 * 109.53765 * 298.50769 * 11 10 9 22 22 C 1.46929 * 120.62501 * 5.03233 * 8 6 5 23 23 C 1.53004 * 109.47145 * 285.27809 * 3 2 1 24 24 C 1.53000 * 109.46774 * 60.00215 * 23 3 2 25 25 C 1.52999 * 109.47091 * 180.02562 * 23 3 2 26 26 H 4.18737 * 15.03861 * 359.97438 * 4 2 1 27 27 H 0.97004 * 120.00401 * 95.00197 * 5 3 2 28 28 H 1.08996 * 109.58217 * 246.20215 * 9 8 6 29 29 H 1.09001 * 109.58137 * 6.61908 * 9 8 6 30 30 H 1.08998 * 109.63502 * 294.86558 * 10 9 8 31 31 H 1.09000 * 109.45686 * 174.73810 * 10 9 8 32 32 H 1.09006 * 109.44801 * 58.52432 * 11 10 9 33 33 H 1.08997 * 109.47041 * 55.06704 * 12 11 10 34 34 H 1.09001 * 109.47052 * 175.07128 * 12 11 10 35 35 H 0.96994 * 120.00569 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.50240 * 301.41746 * 21 11 10 37 37 H 1.09002 * 109.52404 * 181.33200 * 21 11 10 38 38 H 1.08992 * 109.58948 * 353.37575 * 22 8 6 39 39 H 1.08998 * 109.58562 * 113.66165 * 22 8 6 40 40 H 1.08996 * 109.47119 * 300.00228 * 23 3 2 41 41 H 1.08996 * 109.47287 * 60.00115 * 24 23 3 42 42 H 1.09002 * 109.47043 * 179.97438 * 24 23 3 43 43 H 1.08999 * 109.47670 * 299.99559 * 24 23 3 44 44 H 1.08997 * 109.47080 * 60.00197 * 25 23 3 45 45 H 1.09002 * 109.47134 * 180.02562 * 25 23 3 46 46 H 1.09004 * 109.47106 * 300.00338 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.7223 -0.7302 5 7 3.1337 1.3367 -0.3510 6 6 3.2623 1.6886 -1.6455 7 8 3.0623 0.8690 -2.5211 8 7 3.6125 2.9491 -1.9698 9 6 3.6556 3.3762 -3.3749 10 6 2.7919 4.6372 -3.5290 11 6 3.2678 5.6990 -2.5349 12 6 2.4352 6.9707 -2.7099 13 6 2.6930 7.5559 -4.0746 14 1 3.3820 7.0697 -4.7494 15 6 2.0500 8.7127 -4.4613 16 7 1.2114 9.3051 -3.6394 17 14 2.3700 9.4385 -6.1524 18 1 1.4030 8.8705 -7.1259 19 1 2.2078 10.9135 -6.0968 20 1 3.7535 9.1084 -6.5790 21 6 3.1023 5.1739 -1.1070 22 6 3.9642 3.9205 -0.9250 23 6 3.1562 -0.3792 1.3916 24 6 2.6469 -1.7746 1.7580 25 6 4.6862 -0.3779 1.3917 26 1 -1.0499 -0.0009 -0.0002 27 1 3.3641 1.9682 0.3484 28 1 4.6846 3.5978 -3.6580 29 1 3.2626 2.5825 -4.0102 30 1 1.7485 4.3932 -3.3291 31 1 2.8876 5.0210 -4.5447 32 1 4.3182 5.9243 -2.7196 33 1 1.3770 6.7285 -2.6124 34 1 2.7141 7.6956 -1.9451 35 1 0.7587 10.1186 -3.9115 36 1 2.0561 4.9248 -0.9298 37 1 3.4191 5.9392 -0.3984 38 1 3.7748 3.4861 0.0565 39 1 5.0184 4.1838 -1.0108 40 1 2.7926 0.3437 2.1217 41 1 3.0105 -2.4975 1.0279 42 1 3.0107 -2.0455 2.7492 43 1 1.5569 -1.7752 1.7581 44 1 5.0487 0.6163 1.1308 45 1 5.0497 -0.6490 2.3829 46 1 5.0503 -1.1006 0.6614 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491677288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:59 Heat of formation + Delta-G solvation = 4.805699 kcal Electronic energy + Delta-G solvation = -23729.966779 eV Core-core repulsion = 20427.426393 eV Total energy + Delta-G solvation = -3302.540386 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42035 -38.14757 -36.86754 -34.10587 -33.36721 -32.58560 -31.94492 -30.58638 -28.17175 -27.45813 -26.46307 -24.52279 -22.74785 -21.94635 -21.14465 -20.07212 -19.18801 -18.57525 -17.76106 -16.61987 -16.22424 -15.56351 -15.10576 -14.87283 -14.51624 -14.36211 -14.03388 -13.79116 -13.41208 -13.17089 -13.03454 -12.89064 -12.68559 -12.46497 -12.12399 -11.88711 -11.80998 -11.41843 -11.23096 -11.18562 -11.01271 -10.78008 -10.68114 -10.61718 -10.41603 -10.21753 -10.14854 -9.91069 -9.63025 -9.37108 -9.23708 -8.96921 -8.35343 -8.25104 -5.99848 -4.01561 2.33428 2.75482 3.11662 3.29923 3.31974 3.38573 3.41279 3.95715 4.18231 4.45839 4.50560 4.58727 4.85087 5.03110 5.21038 5.29484 5.32230 5.35326 5.35694 5.41393 5.51751 5.55549 5.60808 5.67701 5.73547 5.82079 5.86291 5.92932 5.97584 6.00055 6.10780 6.34376 6.38169 6.40126 6.50532 6.65159 6.97099 7.02212 7.08768 7.14113 7.54476 7.66222 7.80890 7.99817 8.00623 8.42575 8.67873 9.04902 9.62333 11.11498 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.029509 B = 0.003033 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.637853 B = 9228.300324 C = 9298.205911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.194 4.194 3 C 0.276 3.724 4 H 0.109 0.891 5 N -0.741 5.741 6 C 0.709 3.291 7 O -0.593 6.593 8 N -0.621 5.621 9 C 0.127 3.873 10 C -0.118 4.118 11 C -0.080 4.080 12 C 0.028 3.972 13 C -0.516 4.516 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.130 4.130 22 C 0.113 3.887 23 C -0.097 4.097 24 C -0.145 4.145 25 C -0.147 4.147 26 H 0.216 0.784 27 H 0.397 0.603 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 -18.647 12.526 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.196 4.196 3 C 0.171 3.829 4 H 0.126 0.874 5 N -0.399 5.399 6 C 0.411 3.589 7 O -0.471 6.471 8 N -0.358 5.358 9 C 0.004 3.996 10 C -0.156 4.156 11 C -0.098 4.098 12 C -0.009 4.009 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.168 4.168 22 C -0.010 4.010 23 C -0.116 4.116 24 C -0.203 4.203 25 C -0.204 4.204 26 H 0.233 0.767 27 H 0.235 0.765 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.797 -19.071 11.875 22.973 hybrid contribution -0.166 1.015 -0.549 1.166 sum 4.631 -18.056 11.326 21.812 Atomic orbital electron populations 1.24941 0.95917 0.99098 1.00921 1.23511 0.94764 1.01155 1.00151 1.17678 0.83004 0.85010 0.97219 0.87374 1.45305 1.71827 1.16271 1.06490 1.15825 0.77761 0.82572 0.82742 1.90888 1.58604 1.50086 1.47571 1.47359 1.71114 1.08891 1.08394 1.21762 1.00181 0.97793 0.79847 1.21988 0.98729 0.93328 1.01590 1.21177 1.00538 0.96792 0.91318 1.19121 0.94672 0.90332 0.96776 1.21245 1.25154 1.08544 1.00435 0.92555 1.25021 0.95288 0.97081 0.97103 1.69959 1.28542 1.19385 1.35700 0.86640 0.78630 0.78267 0.84748 1.20708 1.21323 1.19881 1.22030 0.99596 0.95538 0.99657 1.21692 0.99541 0.90256 0.89501 1.21339 0.96584 0.98824 0.94849 1.21791 1.01602 0.95234 1.01641 1.21835 0.93912 1.02532 1.02106 0.76721 0.76538 0.92021 0.89632 0.92422 0.89770 0.92314 0.96696 0.96656 0.93070 0.92047 0.91141 0.91652 0.91403 0.90355 0.92191 0.92010 0.92128 0.92266 0.92121 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.19 19.25 29.55 0.57 -1.62 16 2 C -0.19 -2.42 11.57 -37.12 -0.43 -2.85 16 3 C 0.28 3.06 2.06 -70.72 -0.15 2.92 16 4 H 0.11 1.35 7.51 -51.93 -0.39 0.96 16 5 N -0.74 -8.88 4.26 -61.45 -0.26 -9.14 16 6 C 0.71 11.18 8.24 -86.92 -0.72 10.46 16 7 O -0.59 -11.46 15.41 5.29 0.08 -11.38 16 8 N -0.62 -9.35 2.97 -178.24 -0.53 -9.88 16 9 C 0.13 2.05 6.45 -3.49 -0.02 2.03 16 10 C -0.12 -2.19 5.21 -26.39 -0.14 -2.33 16 11 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 12 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 13 C -0.52 -14.08 8.39 -34.44 -0.29 -14.37 16 14 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 17 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 21 C -0.13 -2.03 5.36 -26.61 -0.14 -2.18 16 22 C 0.11 1.44 6.43 -3.71 -0.02 1.41 16 23 C -0.10 -0.75 2.53 -90.62 -0.23 -0.98 16 24 C -0.14 -1.00 8.94 37.16 0.33 -0.66 16 25 C -0.15 -1.00 9.04 37.16 0.34 -0.66 16 26 H 0.22 1.76 7.80 -54.09 -0.42 1.34 16 27 H 0.40 3.85 5.84 -40.82 -0.24 3.62 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.46 7.03 -51.93 -0.37 1.10 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.66 6.91 -51.93 -0.36 1.30 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.65 5.57 -51.93 -0.29 0.36 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.46 7.23 -51.93 -0.38 0.08 16 44 H 0.06 0.42 7.44 -51.93 -0.39 0.03 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -32.84 368.78 -8.57 -41.41 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.83 Total: 1.43 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -1.31 Total: -8.50 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.05 Total: -45.00 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.84 -8.57 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491677288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.220 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds