Wall clock time and date at job start Tue Mar 31 2020 07:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46824 * 2 1 4 4 C 1.50697 * 109.46629 * 179.97438 * 3 2 1 5 5 N 1.30260 * 125.61928 * 89.97562 * 4 3 2 6 6 C 1.34472 * 108.70166 * 179.77158 * 5 4 3 7 7 C 1.50702 * 126.16688 * 180.26990 * 6 5 4 8 8 C 1.34328 * 107.66969 * 0.39653 * 6 5 4 9 9 C 1.50703 * 126.44544 * 179.87416 * 8 6 5 10 10 N 1.46899 * 109.47107 * 89.71067 * 9 8 6 11 11 C 1.46847 * 111.00044 * 66.04660 * 10 9 8 12 12 C 1.53038 * 109.52866 * 185.83761 * 11 10 9 13 13 C 1.53117 * 109.27421 * 300.82510 * 12 11 10 14 14 C 1.53115 * 109.16360 * 57.65205 * 13 12 11 15 15 H 1.09000 * 109.50430 * 62.28388 * 14 13 12 16 16 C 1.50705 * 109.50467 * 182.36224 * 14 13 12 17 17 H 1.07994 * 119.99969 * 119.99439 * 16 14 13 18 18 C 1.37881 * 120.00122 * 300.00170 * 16 14 13 19 19 N 1.31509 * 119.99577 * 359.97438 * 18 16 14 20 20 Si 1.86793 * 120.00084 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47281 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47567 * 119.99981 * 20 18 16 23 23 H 1.48504 * 109.46872 * 239.99792 * 20 18 16 24 24 C 1.46844 * 110.99944 * 190.25611 * 10 9 8 25 25 O 1.33969 * 125.62211 * 269.99437 * 4 3 2 26 26 H 1.09001 * 109.47037 * 60.00133 * 1 2 3 27 27 H 1.08999 * 109.46833 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47130 * 299.99958 * 1 2 3 29 29 H 1.09001 * 109.47130 * 240.00042 * 2 1 3 30 30 H 1.09001 * 109.47037 * 119.99867 * 2 1 3 31 31 H 1.08997 * 109.46891 * 59.99759 * 3 2 1 32 32 H 1.08995 * 109.46543 * 299.99915 * 3 2 1 33 33 H 1.09001 * 109.47088 * 270.14614 * 7 6 5 34 34 H 1.09003 * 109.47057 * 30.14895 * 7 6 5 35 35 H 1.08998 * 109.47185 * 150.14720 * 7 6 5 36 36 H 1.09002 * 109.47152 * 329.71154 * 9 8 6 37 37 H 1.09001 * 109.46980 * 209.71254 * 9 8 6 38 38 H 1.09001 * 109.46436 * 305.85995 * 11 10 9 39 39 H 1.09007 * 109.46424 * 65.82219 * 11 10 9 40 40 H 1.09005 * 109.49841 * 60.75956 * 12 11 10 41 41 H 1.08994 * 109.50372 * 180.87942 * 12 11 10 42 42 H 1.09003 * 109.52002 * 177.55557 * 13 12 11 43 43 H 1.08995 * 109.52510 * 297.67406 * 13 12 11 44 44 H 0.97005 * 120.00095 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.46477 * 294.17796 * 24 10 9 46 46 H 1.08993 * 109.46460 * 54.14969 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.3060 1.4419 -1.0579 6 6 5.5924 1.4472 -0.6661 7 6 6.7976 1.4542 -1.5708 8 6 5.6095 1.4423 0.6771 9 6 6.8331 1.4427 1.5568 10 7 7.2305 2.8279 1.8421 11 6 6.2154 3.5098 2.6551 12 6 6.5905 4.9854 2.8097 13 6 7.9632 5.0905 3.4799 14 6 8.9928 4.3314 2.6384 15 1 9.0683 4.7918 1.6533 16 6 10.3355 4.3807 3.3210 17 1 10.8250 3.4646 3.6164 18 6 10.9388 5.5956 3.5685 19 7 10.3428 6.7112 3.2084 20 14 12.6027 5.6568 4.4153 21 1 13.0560 4.2751 4.7165 22 1 13.5883 6.3181 3.5229 23 1 12.4863 6.4259 5.6803 24 6 8.5481 2.8747 2.4888 25 8 4.3268 1.4428 1.0900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 7.0913 0.4282 -1.7926 34 1 6.5524 1.9707 -2.4988 35 1 7.6209 1.9687 -1.0752 36 1 7.6477 0.9288 1.0465 37 1 6.6085 0.9292 2.4917 38 1 5.2449 3.4312 2.1653 39 1 6.1644 3.0431 3.6389 40 1 6.6283 5.4561 1.8273 41 1 5.8451 5.4877 3.4262 42 1 8.2538 6.1385 3.5527 43 1 7.9154 4.6556 4.4782 44 1 10.7673 7.5659 3.3822 45 1 8.4861 2.4110 3.4733 46 1 9.2717 2.3349 1.8782 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:45 Heat of formation + Delta-G solvation = -3.443990 kcal Electronic energy + Delta-G solvation = -23817.491629 eV Core-core repulsion = 20514.593509 eV Total energy + Delta-G solvation = -3302.898120 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -43.23472 -38.27620 -35.62457 -35.02667 -34.05365 -32.28112 -31.01375 -29.90755 -28.45420 -27.72197 -24.99146 -24.47637 -22.42263 -21.90652 -21.65359 -21.10516 -20.22494 -18.64932 -16.84252 -16.51855 -16.25682 -15.48163 -15.04608 -14.96755 -14.59666 -14.34524 -13.85446 -13.56129 -13.35713 -13.09946 -12.96101 -12.86015 -12.53136 -12.45487 -12.21603 -12.01603 -11.88473 -11.77302 -11.65437 -11.40440 -11.05803 -10.98198 -10.76005 -10.70934 -10.67732 -10.38235 -10.11922 -9.86636 -9.51027 -9.15800 -8.72974 -8.41263 -8.32787 -7.78797 -5.99243 -4.05732 1.54226 2.69574 2.78485 3.28807 3.37123 3.40291 3.96628 4.37421 4.54443 4.64003 4.66600 4.82467 4.92871 5.04193 5.17553 5.30987 5.32553 5.35708 5.44153 5.50707 5.64278 5.70341 5.72986 5.74088 5.77112 5.89078 5.93595 5.97549 6.03070 6.13914 6.18596 6.24282 6.33772 6.45510 6.52426 6.68370 6.71201 6.89946 7.17933 7.33062 7.56043 7.66951 7.75082 7.87659 8.04807 8.14971 8.44704 8.98416 9.58796 11.06760 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.032014 B = 0.003150 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.394940 B = 8885.646643 C = 9272.980305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.020 4.020 4 C 0.180 3.820 5 N -0.480 5.480 6 C 0.000 4.000 7 C -0.071 4.071 8 C -0.030 4.030 9 C 0.138 3.862 10 N -0.533 5.533 11 C 0.064 3.936 12 C -0.116 4.116 13 C -0.111 4.111 14 C 0.056 3.944 15 H 0.036 0.964 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.068 3.932 25 O -0.201 6.201 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.025 0.975 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.092 0.908 43 H 0.030 0.970 44 H 0.259 0.741 45 H 0.022 0.978 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.381 -11.650 -5.543 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.058 4.058 4 C -0.026 4.026 5 N -0.210 5.210 6 C -0.121 4.121 7 C -0.128 4.128 8 C -0.083 4.083 9 C 0.010 3.990 10 N -0.258 5.258 11 C -0.064 4.064 12 C -0.154 4.154 13 C -0.149 4.149 14 C 0.037 3.963 15 H 0.054 0.946 16 C -0.553 4.553 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.058 4.058 25 O -0.088 6.088 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.049 0.951 44 H 0.069 0.931 45 H 0.041 0.959 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.540 -11.208 -6.538 20.245 hybrid contribution 1.028 -0.279 1.967 2.237 sum -14.512 -11.486 -4.571 19.064 Atomic orbital electron populations 1.21756 0.94750 1.02136 1.02192 1.21535 0.96327 0.95008 1.03068 1.20098 0.81527 0.99168 1.05000 1.26043 0.95921 1.01718 0.78968 1.70299 1.01811 1.18529 1.30350 1.21431 0.93056 1.05424 0.92152 1.20126 0.92460 1.02262 0.97958 1.23185 0.83056 1.06974 0.95057 1.20474 0.89746 0.92487 0.96285 1.62067 1.04079 1.11587 1.48095 1.22053 0.93893 0.96192 0.94275 1.21669 0.99234 0.93507 1.00977 1.21664 0.91657 1.04607 0.96972 1.18669 0.93085 0.87964 0.96600 0.94632 1.21160 1.03081 0.92411 1.38666 0.92726 1.24937 0.97494 0.95753 0.95679 1.69901 1.38056 0.97397 1.47273 0.86566 0.84293 0.78022 0.79271 1.19852 1.21025 1.21117 1.22363 0.86554 1.01833 0.95070 1.84379 1.16844 1.69992 1.37611 0.92300 0.92287 0.92390 0.91120 0.91549 0.89103 0.87853 0.91325 0.90919 0.89672 0.87761 0.93675 0.92650 0.95676 0.92126 0.93489 0.88997 0.95102 0.93077 0.95927 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.96 5.92 -26.72 -0.16 -1.12 16 3 C -0.02 -0.19 5.84 -27.88 -0.16 -0.35 16 4 C 0.18 2.51 7.60 -12.95 -0.10 2.42 16 5 N -0.48 -7.51 11.29 -7.36 -0.08 -7.59 16 6 C 0.00 0.00 7.11 -82.81 -0.59 -0.59 16 7 C -0.07 -0.92 10.05 36.01 0.36 -0.56 16 8 C -0.03 -0.47 5.94 -35.69 -0.21 -0.68 16 9 C 0.14 2.13 5.12 -4.98 -0.03 2.10 16 10 N -0.53 -9.83 4.65 -236.11 -1.10 -10.92 16 11 C 0.06 1.18 5.31 -3.83 -0.02 1.16 16 12 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 13 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 14 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 15 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.51 -13.83 8.57 -34.44 -0.29 -14.13 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -25.14 11.35 55.43 0.63 -24.51 16 20 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 C 0.07 1.39 4.68 -3.83 -0.02 1.37 16 25 O -0.20 -3.12 10.03 5.36 0.05 -3.07 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.14 7.80 -51.93 -0.40 0.73 16 36 H 0.10 1.41 7.65 -51.93 -0.40 1.02 16 37 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 38 H 0.06 0.99 6.54 -51.93 -0.34 0.65 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 1.24 8.01 -51.93 -0.42 0.82 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -29.81 365.36 -9.64 -39.45 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -8.18 Total: -1.48 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -1.45 Total: -13.38 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.55 Total: -43.03 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: 0.05 Total: -3.07 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.81 -9.64 -39.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.010 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds