Wall clock time and date at job start Tue Mar 31 2020 07:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46824 * 2 1 4 4 C 1.50697 * 109.46629 * 179.97438 * 3 2 1 5 5 N 1.30260 * 125.61928 * 89.97562 * 4 3 2 6 6 C 1.34472 * 108.70166 * 179.77158 * 5 4 3 7 7 C 1.50702 * 126.16688 * 180.26990 * 6 5 4 8 8 C 1.34328 * 107.66969 * 0.39653 * 6 5 4 9 9 C 1.50703 * 126.44544 * 179.87416 * 8 6 5 10 10 N 1.46899 * 109.47107 * 89.71067 * 9 8 6 11 11 C 1.46847 * 111.00044 * 66.04660 * 10 9 8 12 12 C 1.53038 * 109.52866 * 185.83761 * 11 10 9 13 13 C 1.53117 * 109.27421 * 300.82510 * 12 11 10 14 14 C 1.53115 * 109.16360 * 57.65205 * 13 12 11 15 15 H 1.09000 * 109.50430 * 62.28388 * 14 13 12 16 16 C 1.50705 * 109.50467 * 182.36224 * 14 13 12 17 17 H 1.07994 * 119.99969 * 119.99439 * 16 14 13 18 18 C 1.37881 * 120.00122 * 300.00170 * 16 14 13 19 19 N 1.31509 * 119.99577 * 359.97438 * 18 16 14 20 20 Si 1.86793 * 120.00084 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47281 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47567 * 119.99981 * 20 18 16 23 23 H 1.48504 * 109.46872 * 239.99792 * 20 18 16 24 24 C 1.46844 * 110.99944 * 190.25611 * 10 9 8 25 25 O 1.33969 * 125.62211 * 269.99437 * 4 3 2 26 26 H 1.09001 * 109.47037 * 60.00133 * 1 2 3 27 27 H 1.08999 * 109.46833 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47130 * 299.99958 * 1 2 3 29 29 H 1.09001 * 109.47130 * 240.00042 * 2 1 3 30 30 H 1.09001 * 109.47037 * 119.99867 * 2 1 3 31 31 H 1.08997 * 109.46891 * 59.99759 * 3 2 1 32 32 H 1.08995 * 109.46543 * 299.99915 * 3 2 1 33 33 H 1.09001 * 109.47088 * 270.14614 * 7 6 5 34 34 H 1.09003 * 109.47057 * 30.14895 * 7 6 5 35 35 H 1.08998 * 109.47185 * 150.14720 * 7 6 5 36 36 H 1.09002 * 109.47152 * 329.71154 * 9 8 6 37 37 H 1.09001 * 109.46980 * 209.71254 * 9 8 6 38 38 H 1.09001 * 109.46436 * 305.85995 * 11 10 9 39 39 H 1.09007 * 109.46424 * 65.82219 * 11 10 9 40 40 H 1.09005 * 109.49841 * 60.75956 * 12 11 10 41 41 H 1.08994 * 109.50372 * 180.87942 * 12 11 10 42 42 H 1.09003 * 109.52002 * 177.55557 * 13 12 11 43 43 H 1.08995 * 109.52510 * 297.67406 * 13 12 11 44 44 H 0.97005 * 120.00095 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.46477 * 294.17796 * 24 10 9 46 46 H 1.08993 * 109.46460 * 54.14969 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.3060 1.4419 -1.0579 6 6 5.5924 1.4472 -0.6661 7 6 6.7976 1.4542 -1.5708 8 6 5.6095 1.4423 0.6771 9 6 6.8331 1.4427 1.5568 10 7 7.2305 2.8279 1.8421 11 6 6.2154 3.5098 2.6551 12 6 6.5905 4.9854 2.8097 13 6 7.9632 5.0905 3.4799 14 6 8.9928 4.3314 2.6384 15 1 9.0683 4.7918 1.6533 16 6 10.3355 4.3807 3.3210 17 1 10.8250 3.4646 3.6164 18 6 10.9388 5.5956 3.5685 19 7 10.3428 6.7112 3.2084 20 14 12.6027 5.6568 4.4153 21 1 13.0560 4.2751 4.7165 22 1 13.5883 6.3181 3.5229 23 1 12.4863 6.4259 5.6803 24 6 8.5481 2.8747 2.4888 25 8 4.3268 1.4428 1.0900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 7.0913 0.4282 -1.7926 34 1 6.5524 1.9707 -2.4988 35 1 7.6209 1.9687 -1.0752 36 1 7.6477 0.9288 1.0465 37 1 6.6085 0.9292 2.4917 38 1 5.2449 3.4312 2.1653 39 1 6.1644 3.0431 3.6389 40 1 6.6283 5.4561 1.8273 41 1 5.8451 5.4877 3.4262 42 1 8.2538 6.1385 3.5527 43 1 7.9154 4.6556 4.4782 44 1 10.7673 7.5659 3.3822 45 1 8.4861 2.4110 3.4733 46 1 9.2717 2.3349 1.8782 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:42 Heat of formation + Delta-G solvation = -21.903203 kcal Electronic energy + Delta-G solvation = -23818.292080 eV Core-core repulsion = 20514.593509 eV Total energy + Delta-G solvation = -3303.698571 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -44.35913 -39.86599 -36.44299 -36.19134 -35.66001 -33.93743 -32.26874 -31.69775 -29.33121 -28.90400 -26.93551 -25.68985 -23.67291 -23.23569 -23.02943 -22.18141 -21.35774 -20.40739 -18.49913 -17.84659 -17.58154 -16.78016 -16.25317 -16.20115 -15.92983 -15.80348 -15.09102 -14.98503 -14.59407 -14.35888 -14.21055 -14.10347 -14.02298 -13.70844 -13.48756 -13.19566 -12.92400 -12.88850 -12.83365 -12.61519 -12.59283 -12.47654 -12.26425 -11.89208 -11.80164 -11.76250 -11.64008 -11.54855 -11.39528 -10.96449 -10.67556 -10.38781 -9.58296 -9.23586 -8.07074 -6.20965 0.40900 1.41618 1.43784 1.54539 1.59856 1.69525 2.43981 2.98508 3.10145 3.20646 3.67761 3.89210 3.97720 4.02770 4.08991 4.13489 4.18586 4.29489 4.38889 4.49062 4.56243 4.58992 4.66572 4.68453 4.76045 4.79642 4.83703 4.87955 4.91619 4.94022 5.01344 5.05108 5.10204 5.14647 5.21823 5.24831 5.33795 5.42754 5.46982 5.48944 5.64573 5.91127 6.08067 6.15443 6.18158 6.43344 6.75531 6.92002 7.47190 8.97965 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.032014 B = 0.003150 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.394940 B = 8885.646643 C = 9272.980305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.021 4.021 4 C 0.188 3.812 5 N -0.507 5.507 6 C -0.009 4.009 7 C -0.069 4.069 8 C -0.050 4.050 9 C 0.144 3.856 10 N -0.543 5.543 11 C 0.072 3.928 12 C -0.108 4.108 13 C -0.104 4.104 14 C 0.053 3.947 15 H -0.002 1.002 16 C -0.531 4.531 17 H 0.056 0.944 18 C 0.012 3.988 19 N -0.917 5.917 20 Si 0.954 3.046 21 H -0.265 1.265 22 H -0.282 1.282 23 H -0.283 1.283 24 C 0.082 3.918 25 O -0.211 6.211 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.031 0.969 40 H 0.046 0.954 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.026 0.974 44 H 0.259 0.741 45 H 0.024 0.976 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.357 -13.066 -5.355 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.059 4.059 4 C -0.019 4.019 5 N -0.237 5.237 6 C -0.128 4.128 7 C -0.126 4.126 8 C -0.102 4.102 9 C 0.016 3.984 10 N -0.268 5.268 11 C -0.056 4.056 12 C -0.146 4.146 13 C -0.142 4.142 14 C 0.034 3.966 15 H 0.016 0.984 16 C -0.570 4.570 17 H 0.074 0.926 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.780 3.220 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.209 1.209 24 C -0.044 4.044 25 O -0.099 6.099 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.042 0.958 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.519 -12.641 -6.359 21.751 hybrid contribution 1.253 0.163 1.852 2.242 sum -15.266 -12.478 -4.507 20.225 Atomic orbital electron populations 1.21733 0.92956 1.02815 1.02911 1.21485 0.97744 0.93777 1.02354 1.20409 0.78657 1.00442 1.06376 1.27017 0.97358 0.99261 0.78258 1.70339 1.02109 1.20063 1.31174 1.21850 0.93754 1.04632 0.92611 1.20170 0.91412 1.03530 0.97458 1.23163 0.83286 1.08659 0.95142 1.20486 0.90397 0.90540 0.96946 1.61953 1.03195 1.13968 1.47688 1.21942 0.94162 0.94728 0.94747 1.21562 0.97684 0.95298 1.00076 1.21471 0.93530 1.02259 0.96918 1.18588 0.92964 0.90622 0.94405 0.98382 1.21533 1.04249 0.92530 1.38644 0.92567 1.25728 1.00979 0.95497 0.96410 1.70048 1.39501 0.97830 1.48293 0.85562 0.80041 0.78283 0.78088 1.18910 1.20808 1.20880 1.22039 0.87992 0.98839 0.95568 1.84374 1.16951 1.70319 1.38255 0.91640 0.91669 0.91627 0.92071 0.92068 0.87423 0.86700 0.89241 0.90808 0.90265 0.86009 0.92708 0.91737 0.95087 0.93559 0.91459 0.92286 0.95552 0.93145 0.95797 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.12 -1.62 5.92 30.60 0.18 -1.44 16 3 C -0.02 -0.35 5.84 29.85 0.17 -0.17 16 4 C 0.19 4.97 7.60 88.34 0.67 5.64 16 5 N -0.51 -15.31 11.29 -291.98 -3.30 -18.61 16 6 C -0.01 -0.26 7.11 41.26 0.29 0.04 16 7 C -0.07 -1.71 10.05 71.24 0.72 -0.99 16 8 C -0.05 -1.51 5.94 24.79 0.15 -1.36 16 9 C 0.14 4.18 5.12 85.56 0.44 4.62 16 10 N -0.54 -19.49 4.65 -900.92 -4.19 -23.68 16 11 C 0.07 2.57 5.31 86.33 0.46 3.03 16 12 C -0.11 -4.34 6.09 30.65 0.19 -4.15 16 13 C -0.10 -4.99 5.02 30.67 0.15 -4.83 16 14 C 0.05 2.66 2.26 -11.49 -0.03 2.63 16 15 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 16 C -0.53 -28.85 8.57 25.60 0.22 -28.63 16 17 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 18 C 0.01 0.69 5.30 84.66 0.45 1.14 16 19 N -0.92 -53.24 11.35 21.45 0.24 -53.00 16 20 Si 0.95 43.34 29.54 68.60 2.03 45.37 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 C 0.08 3.33 4.68 86.33 0.40 3.73 16 25 O -0.21 -6.24 10.03 -3.75 -0.04 -6.28 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 2.05 7.80 -2.39 -0.02 2.04 16 36 H 0.12 3.07 7.65 -2.39 -0.02 3.05 16 37 H 0.05 1.50 8.12 -2.39 -0.02 1.48 16 38 H 0.06 2.21 6.54 -2.39 -0.02 2.20 16 39 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.06 3.23 6.15 -2.39 -0.01 3.21 16 43 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 2.75 8.01 -2.39 -0.02 2.73 16 Total: -1.00 -64.52 365.36 0.86 -63.66 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.93 Total: 13.98 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 5.18 Total: -21.44 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -7.24 Total: -95.28 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.04 Total: -6.28 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -64.52 0.86 -63.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.755 kcal (2) G-P(sol) polarization free energy of solvation -64.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds