Wall clock time and date at job start Tue Mar 31 2020 07:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47125 * 104.30080 * 3 2 1 5 5 C 1.53004 * 109.47229 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47229 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47193 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99638 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00068 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00084 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47208 * 179.97438 * 10 9 7 12 12 C 1.53352 * 109.41800 * 295.12674 * 11 10 9 13 13 C 1.53190 * 109.15070 * 178.67720 * 12 11 10 14 14 N 1.46925 * 108.89356 * 54.57285 * 13 12 11 15 15 C 1.36935 * 120.62758 * 126.30089 * 14 13 12 16 16 H 1.08001 * 120.00088 * 332.62829 * 15 14 13 17 17 C 1.38817 * 119.99782 * 152.62208 * 15 14 13 18 18 N 1.31618 * 119.99923 * 159.36242 * 17 15 14 19 19 Si 1.86801 * 120.00195 * 339.36341 * 17 15 14 20 20 H 1.48501 * 109.47054 * 92.89675 * 19 17 15 21 21 H 1.48497 * 109.47324 * 212.90179 * 19 17 15 22 22 H 1.48501 * 109.46722 * 332.89954 * 19 17 15 23 23 C 1.46926 * 118.73822 * 306.31916 * 14 13 12 24 24 C 1.53037 * 109.46053 * 174.99519 * 11 10 9 25 25 H 4.44641 * 5.63389 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47516 * 344.29912 * 3 2 1 27 27 H 1.09009 * 109.47232 * 224.29996 * 3 2 1 28 28 H 1.08996 * 109.47446 * 59.99931 * 4 3 2 29 29 H 1.08996 * 109.47034 * 299.99403 * 4 3 2 30 30 H 1.09005 * 109.47226 * 59.99723 * 5 4 3 31 31 H 1.08997 * 109.47093 * 300.00343 * 5 4 3 32 32 H 1.08996 * 109.47061 * 59.99896 * 6 5 4 33 33 H 1.09008 * 109.46669 * 299.99972 * 6 5 4 34 34 H 0.97004 * 120.00152 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.47010 * 59.99318 * 10 9 7 36 36 H 1.08996 * 109.46600 * 299.99324 * 10 9 7 37 37 H 1.09008 * 109.45887 * 55.02318 * 11 10 9 38 38 H 1.09004 * 109.68561 * 58.70472 * 12 11 10 39 39 H 1.09004 * 109.47287 * 298.51133 * 12 11 10 40 40 H 1.09004 * 109.58215 * 294.71811 * 13 12 11 41 41 H 1.08997 * 109.58828 * 174.43980 * 13 12 11 42 42 H 0.96999 * 119.99917 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.58248 * 173.39705 * 23 14 13 44 44 H 1.08994 * 109.58922 * 293.68210 * 23 14 13 45 45 H 1.09003 * 109.49698 * 61.43697 * 24 11 10 46 46 H 1.08994 * 109.52761 * 301.35110 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.3572 -1.3978 5 6 4.6858 0.3585 -1.3977 6 6 5.1957 0.7144 -2.7956 7 6 6.7027 0.7151 -2.7957 8 8 7.3092 0.4568 -1.7776 9 7 7.3764 1.0037 -3.9266 10 6 8.8414 1.0049 -3.9265 11 6 9.3513 1.3607 -5.3245 12 6 8.9432 0.2602 -6.3114 13 6 9.4279 0.6385 -7.7145 14 7 10.8726 0.9008 -7.6642 15 6 11.7298 0.2500 -8.5109 16 1 11.4735 -0.7274 -8.8924 17 6 12.9280 0.8464 -8.8788 18 7 13.9172 0.1085 -9.3364 19 14 13.1367 2.6963 -8.7244 20 1 13.7391 3.0181 -7.4058 21 1 14.0262 3.1863 -9.8079 22 1 11.8105 3.3550 -8.8368 23 6 11.3802 1.8745 -6.6880 24 6 10.8764 1.4844 -5.2949 25 1 -1.0500 0.0002 0.0001 26 1 3.0098 -0.9884 0.2781 27 1 3.0090 0.7364 0.7178 28 1 2.7921 1.3463 -1.6759 29 1 2.7929 -0.3785 -2.1155 30 1 5.0500 -0.6305 -1.1194 31 1 5.0485 1.0944 -0.6800 32 1 4.8315 1.7032 -3.0743 33 1 4.8330 -0.0219 -3.5130 34 1 6.8913 1.2107 -4.7408 35 1 9.2055 0.0160 -3.6481 36 1 9.2040 1.7410 -3.2090 37 1 8.9161 2.3093 -5.6392 38 1 7.8582 0.1558 -6.3170 39 1 9.3984 -0.6838 -6.0115 40 1 8.9055 1.5335 -8.0525 41 1 9.2293 -0.1825 -8.4034 42 1 14.7546 0.5253 -9.5932 43 1 12.4702 1.8673 -6.6976 44 1 11.0191 2.8706 -6.9437 45 1 11.3133 0.5289 -5.0044 46 1 11.1659 2.2505 -4.5756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773397231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:56 Heat of formation + Delta-G solvation = 8.383334 kcal Electronic energy + Delta-G solvation = -22600.257009 eV Core-core repulsion = 19297.871761 eV Total energy + Delta-G solvation = -3302.385248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.90960 -38.15717 -36.49211 -35.11064 -33.50579 -32.86513 -31.18857 -30.41682 -30.14124 -27.25326 -25.28520 -23.70342 -22.77920 -21.66318 -21.22837 -20.38662 -19.38504 -18.40996 -17.16049 -16.70736 -16.39379 -15.99561 -15.32734 -15.15634 -14.60818 -14.38115 -14.13184 -14.07625 -13.72822 -13.31835 -13.27568 -13.12299 -12.86595 -12.40245 -12.13639 -12.09550 -11.92873 -11.76446 -11.60175 -11.38995 -11.02454 -10.85107 -10.65501 -10.56303 -10.52464 -10.44972 -10.15283 -9.97789 -9.87040 -9.64786 -9.43228 -9.06567 -8.62991 -6.98685 -5.95687 -3.31388 2.44535 2.48727 2.57895 3.14117 3.30982 3.47259 3.49849 3.98514 4.50302 4.52005 4.58214 4.59507 4.91537 4.93890 4.94966 4.99198 5.09135 5.15710 5.21273 5.32936 5.37834 5.42933 5.43570 5.61755 5.67948 5.68312 5.76537 5.86644 5.88780 5.93361 6.01036 6.04322 6.15665 6.26406 6.37392 6.42543 6.48578 6.61240 6.63910 6.68975 6.95219 7.26057 7.44567 7.95744 8.16476 8.32117 8.93616 9.71488 10.09409 11.20344 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.046166 B = 0.002191 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.357539 B =12775.456355 C =12960.771316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.184 4.184 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.141 4.141 7 C 0.508 3.492 8 O -0.545 6.545 9 N -0.727 5.727 10 C 0.123 3.877 11 C -0.091 4.091 12 C -0.129 4.129 13 C 0.148 3.852 14 N -0.606 5.606 15 C -0.260 4.260 16 H 0.085 0.915 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.884 3.116 20 H -0.288 1.288 21 H -0.304 1.304 22 H -0.272 1.272 23 C 0.126 3.874 24 C -0.126 4.126 25 H 0.216 0.784 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.062 0.938 42 H 0.262 0.738 43 H 0.073 0.927 44 H 0.024 0.976 45 H 0.068 0.932 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.431 2.623 14.906 27.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.184 4.184 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.182 4.182 7 C 0.295 3.705 8 O -0.423 6.423 9 N -0.379 5.379 10 C 0.000 4.000 11 C -0.110 4.110 12 C -0.168 4.168 13 C 0.022 3.978 14 N -0.330 5.330 15 C -0.388 4.388 16 H 0.102 0.898 17 C -0.176 4.176 18 N -0.551 5.551 19 Si 0.714 3.286 20 H -0.216 1.216 21 H -0.232 1.232 22 H -0.197 1.197 23 C 0.001 3.999 24 C -0.166 4.166 25 H 0.233 0.767 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.235 0.765 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.042 0.958 45 H 0.086 0.914 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.795 2.411 15.535 26.873 hybrid contribution -0.167 1.168 -0.420 1.253 sum -21.963 3.580 15.114 26.900 Atomic orbital electron populations 1.24922 0.96016 1.01478 1.00932 1.23234 0.94675 1.00159 1.00363 1.18776 0.84488 1.03337 0.98599 1.21566 0.95375 1.02375 0.95908 1.21345 0.93819 1.03456 0.95640 1.21683 0.92102 1.04178 1.00189 1.20710 0.90203 0.76390 0.83233 1.90703 1.70613 1.48504 1.32482 1.46129 1.07987 1.71169 1.12613 1.21526 0.78708 1.01983 0.97821 1.21359 0.97209 0.99367 0.93083 1.22132 0.98855 0.98429 0.97385 1.20909 0.84845 0.98266 0.93778 1.44344 1.01777 1.48491 1.38345 1.18923 0.98721 0.99164 1.22031 0.89768 1.25284 0.96291 0.97598 0.98454 1.69839 1.03359 1.34760 1.47174 0.86939 0.77459 0.88122 0.76059 1.21623 1.23180 1.19662 1.21325 0.98811 0.91999 0.87808 1.21988 0.93625 1.01882 0.99083 0.76742 0.89368 0.89406 0.91474 0.91410 0.90856 0.90917 0.88930 0.88831 0.76514 0.91466 0.91819 0.91223 0.92963 0.91700 0.96154 0.91934 0.92781 0.90887 0.95797 0.91355 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.57 19.25 29.55 0.57 -1.00 16 2 C -0.18 -1.49 13.34 -37.12 -0.50 -1.99 16 3 C -0.02 -0.10 5.70 -29.52 -0.17 -0.27 16 4 C -0.11 -0.70 5.17 -26.73 -0.14 -0.83 16 5 C -0.10 -0.77 4.50 -26.73 -0.12 -0.89 16 6 C -0.14 -1.03 5.70 -27.88 -0.16 -1.18 16 7 C 0.51 5.76 7.83 -10.99 -0.09 5.68 16 8 O -0.55 -8.44 15.98 5.56 0.09 -8.35 16 9 N -0.73 -7.72 5.27 -60.30 -0.32 -8.04 16 10 C 0.12 1.58 5.07 -4.04 -0.02 1.56 16 11 C -0.09 -1.28 2.19 -90.42 -0.20 -1.48 16 12 C -0.13 -1.91 5.27 -26.45 -0.14 -2.05 16 13 C 0.15 2.75 6.50 -3.71 -0.02 2.73 16 14 N -0.61 -14.03 2.77 -172.32 -0.48 -14.51 16 15 C -0.26 -7.20 10.03 -15.06 -0.15 -7.35 16 16 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 17 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 18 N -0.91 -27.78 13.97 55.49 0.78 -27.00 16 19 Si 0.88 22.25 24.34 -169.99 -4.14 18.11 16 20 H -0.29 -7.01 6.62 56.52 0.37 -6.63 16 21 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 22 H -0.27 -6.69 6.64 56.52 0.38 -6.32 16 23 C 0.13 2.68 4.21 -3.71 -0.02 2.66 16 24 C -0.13 -2.13 5.36 -26.61 -0.14 -2.27 16 25 H 0.22 0.86 7.80 -54.09 -0.42 0.43 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.40 3.30 7.65 -40.82 -0.31 2.99 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.05 0.62 7.16 -51.93 -0.37 0.25 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.07 1.72 4.50 -51.93 -0.23 1.49 16 44 H 0.02 0.50 7.07 -51.93 -0.37 0.14 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -33.37 368.59 -7.96 -41.34 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.07 Total: -0.97 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.38 Total: -6.13 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.02 Total: -49.55 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.37 -7.96 -41.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773397231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.722 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds