Wall clock time and date at job start Tue Mar 31 2020 06:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 110.78109 * 2 1 4 4 C 1.54323 * 110.72471 * 236.75787 * 2 1 3 5 5 N 1.47017 * 107.27349 * 219.44604 * 4 2 1 6 6 C 1.36943 * 125.64381 * 178.98745 * 5 4 2 7 7 H 1.07997 * 120.00492 * 359.97438 * 6 5 4 8 8 C 1.38818 * 119.99595 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99948 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99866 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47138 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47114 * 120.00023 * 10 8 6 13 13 H 1.48501 * 109.46892 * 240.00113 * 10 8 6 14 14 C 1.47420 * 108.70392 * 358.94298 * 5 4 2 15 15 C 1.54908 * 104.83359 * 24.12740 * 14 5 4 16 16 H 1.08999 * 111.03736 * 204.90574 * 15 14 5 17 17 N 1.46497 * 111.00457 * 81.06328 * 15 14 5 18 18 C 1.34777 * 119.99525 * 92.80227 * 17 15 14 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 15 21 21 C 1.53897 * 113.58760 * 279.49414 * 20 18 17 22 22 C 1.53427 * 86.82424 * 220.45545 * 21 20 18 23 23 C 1.52457 * 128.60403 * 165.09571 * 22 21 20 24 24 C 1.52458 * 128.52129 * 245.01439 * 22 21 20 25 25 C 1.53263 * 87.71948 * 25.01581 * 22 21 20 26 26 H 1.08991 * 109.47494 * 296.76106 * 1 2 3 27 27 H 1.08999 * 109.46778 * 56.76455 * 1 2 3 28 28 H 1.09004 * 109.47038 * 176.75496 * 1 2 3 29 29 H 1.09006 * 109.47119 * 183.23619 * 3 2 1 30 30 H 1.08995 * 109.47304 * 303.23752 * 3 2 1 31 31 H 1.09004 * 109.46741 * 63.24133 * 3 2 1 32 32 H 1.09003 * 109.88194 * 338.86839 * 4 2 1 33 33 H 1.09002 * 109.88332 * 99.87032 * 4 2 1 34 34 H 0.96999 * 119.99199 * 180.02562 * 9 8 6 35 35 H 1.08999 * 110.36283 * 265.28544 * 14 5 4 36 36 H 1.09002 * 110.36884 * 142.96876 * 14 5 4 37 37 H 0.97000 * 120.00580 * 272.80973 * 17 15 14 38 38 H 1.08996 * 112.83170 * 50.60849 * 20 18 17 39 39 H 1.08994 * 113.64325 * 334.92835 * 21 20 18 40 40 H 1.08996 * 113.64518 * 105.93031 * 21 20 18 41 41 H 1.08997 * 117.51130 * 224.95634 * 23 22 21 42 42 H 1.08992 * 117.51388 * 10.06936 * 23 22 21 43 43 H 1.08998 * 117.51109 * 349.80696 * 24 22 21 44 44 H 1.09000 * 117.51364 * 134.90572 * 24 22 21 45 45 H 1.09004 * 113.64601 * 220.48028 * 25 22 21 46 46 H 1.09005 * 113.64280 * 89.48153 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0761 -0.7912 -1.2072 5 7 3.2445 -1.5507 -0.7389 6 6 4.0044 -2.3968 -1.5017 7 1 3.7614 -2.5506 -2.5427 8 6 5.0866 -3.0576 -0.9367 9 7 5.3825 -2.8706 0.3321 10 14 6.1228 -4.2123 -1.9771 11 1 5.5851 -4.2488 -3.3609 12 1 7.5268 -3.7293 -2.0036 13 1 6.0798 -5.5773 -1.3937 14 6 3.4632 -1.2498 0.6876 15 6 2.0788 -0.7955 1.2139 16 1 2.1842 -0.1520 2.0873 17 7 1.2270 -1.9488 1.5144 18 6 1.2024 -2.4618 2.7605 19 8 1.8851 -1.9684 3.6331 20 6 0.3214 -3.6443 3.0712 21 6 -1.1514 -3.2686 3.3119 22 6 -1.1388 -4.2968 4.4506 23 6 -2.1463 -4.4772 5.5806 24 6 -1.9234 -5.5992 4.5626 25 6 0.3757 -4.0822 4.5455 26 1 -0.3634 0.4627 0.9175 27 1 -0.3633 0.5632 -0.8596 28 1 -0.3633 -1.0261 -0.0582 29 1 3.1611 1.4061 -0.0580 30 1 1.6751 1.9700 -0.8595 31 1 1.7691 1.9343 0.9177 32 1 1.3130 -1.4758 -1.5776 33 1 2.3716 -0.1026 -1.9988 34 1 6.1389 -3.3321 0.7268 35 1 4.1931 -0.4479 0.7986 36 1 3.7959 -2.1426 1.2171 37 1 0.6807 -2.3433 0.8167 38 1 0.4525 -4.4659 2.3671 39 1 -1.2909 -2.2422 3.6512 40 1 -1.8114 -3.5367 2.4870 41 1 -1.7535 -4.6249 6.5865 42 1 -3.0796 -3.9179 5.5171 43 1 -2.7102 -5.7777 3.8297 44 1 -1.3840 -6.4846 4.8991 45 1 0.9383 -5.0016 4.7081 46 1 0.6620 -3.2826 5.2288 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975016547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:44 Heat of formation + Delta-G solvation = 32.865181 kcal Electronic energy + Delta-G solvation = -24579.254633 eV Core-core repulsion = 21277.930997 eV Total energy + Delta-G solvation = -3301.323636 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -40.27541 -38.97328 -37.42460 -33.77994 -33.55822 -32.87590 -30.68287 -28.21199 -26.89827 -25.74506 -25.60878 -24.59036 -22.92819 -22.54822 -20.34909 -19.61770 -18.60643 -18.32393 -16.87968 -16.62157 -15.84862 -15.46028 -15.21288 -14.71795 -14.24516 -13.95572 -13.78304 -13.74775 -13.15565 -12.81745 -12.53394 -12.38516 -12.16712 -11.91913 -11.88104 -11.70431 -11.62039 -11.50157 -11.23897 -11.15292 -10.95097 -10.77819 -10.39412 -10.37478 -10.29151 -10.15981 -9.92052 -9.77866 -9.74263 -9.67096 -9.16439 -8.66242 -8.26828 -6.79334 -5.61771 -3.04884 3.14464 3.40069 3.45281 3.48228 3.55288 3.84804 4.26902 4.49724 4.54922 4.73574 4.76954 4.84552 5.02610 5.26784 5.31108 5.37179 5.49014 5.49500 5.53924 5.58693 5.65869 5.70816 5.71546 5.79752 5.84211 5.90910 5.99078 6.01727 6.05999 6.13109 6.21286 6.23407 6.29645 6.38196 6.45235 6.50941 6.64480 6.72712 6.81649 7.05666 7.53197 7.64638 7.90663 8.13403 8.40991 8.81818 9.23619 9.85194 10.49528 11.40786 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.014261 B = 0.004889 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.982123 B = 5725.925281 C = 6954.203643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.144 3.856 5 N -0.601 5.601 6 C -0.224 4.224 7 H 0.077 0.923 8 C -0.009 4.009 9 N -0.917 5.917 10 Si 0.911 3.089 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.146 3.854 15 C 0.123 3.877 16 H 0.086 0.914 17 N -0.699 5.699 18 C 0.523 3.477 19 O -0.547 6.547 20 C -0.130 4.130 21 C -0.080 4.080 22 C -0.161 4.161 23 C -0.167 4.167 24 C -0.153 4.153 25 C -0.074 4.074 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.251 0.749 35 H 0.019 0.981 36 H 0.112 0.888 37 H 0.396 0.604 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.741 0.454 5.453 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.018 3.982 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.020 3.980 15 C 0.017 3.983 16 H 0.104 0.896 17 N -0.348 5.348 18 C 0.309 3.691 19 O -0.425 6.425 20 C -0.152 4.152 21 C -0.118 4.118 22 C -0.161 4.161 23 C -0.204 4.204 24 C -0.189 4.189 25 C -0.112 4.112 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.130 0.870 37 H 0.230 0.770 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.046 0.684 6.070 16.239 hybrid contribution 0.419 -0.821 -1.046 1.395 sum -14.627 -0.138 5.024 15.466 Atomic orbital electron populations 1.21695 0.94647 1.01209 1.01111 1.21849 0.94823 0.95707 0.96571 1.21684 1.01891 0.94200 1.00795 1.21395 0.90264 0.92934 0.93651 1.44472 1.30641 1.50214 1.07385 1.19081 1.06396 1.16932 0.92869 0.90544 1.24790 0.98770 1.00608 0.96324 1.69827 1.29875 1.46011 1.10794 0.86049 0.80189 0.80477 0.79062 1.20597 1.21782 1.21830 1.22302 0.89334 1.01279 0.85041 1.22503 0.93253 0.86380 0.96132 0.89573 1.45780 1.45553 1.32875 1.10632 1.20233 0.82192 0.84280 0.82394 1.90658 1.43501 1.61604 1.46723 1.22589 0.95448 0.97603 0.99528 1.22411 0.94349 0.98447 0.96600 1.22223 0.94887 0.99445 0.99559 1.22782 1.00311 1.02542 0.94793 1.22775 1.02035 0.91972 1.02157 1.22356 0.91943 1.01861 0.95014 0.92932 0.92882 0.92892 0.91795 0.92783 0.93121 0.96156 0.95965 0.93768 0.96321 0.87021 0.76961 0.87007 0.89398 0.90837 0.88760 0.88865 0.88705 0.88630 0.91080 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.07 37.16 0.30 -1.40 16 2 C -0.09 -1.47 0.80 -152.67 -0.12 -1.59 16 3 C -0.13 -1.96 8.41 37.16 0.31 -1.65 16 4 C 0.14 2.88 6.41 -3.07 -0.02 2.86 16 5 N -0.60 -15.01 3.39 -170.08 -0.58 -15.59 16 6 C -0.22 -6.19 10.27 -15.05 -0.15 -6.35 16 7 H 0.08 2.05 7.83 -52.49 -0.41 1.63 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -27.22 10.09 55.49 0.56 -26.66 16 10 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 C 0.15 3.60 5.27 -2.53 -0.01 3.59 16 15 C 0.12 2.39 2.67 -65.78 -0.18 2.21 16 16 H 0.09 1.73 7.44 -51.93 -0.39 1.35 16 17 N -0.70 -12.25 4.54 -51.73 -0.24 -12.49 16 18 C 0.52 9.37 7.35 -10.98 -0.08 9.29 16 19 O -0.55 -11.85 15.54 5.55 0.09 -11.76 16 20 C -0.13 -1.80 4.14 -90.84 -0.38 -2.18 16 21 C -0.08 -0.90 7.66 -26.04 -0.20 -1.10 16 22 C -0.16 -1.75 3.09 -154.71 -0.48 -2.23 16 23 C -0.17 -1.55 10.53 -26.94 -0.28 -1.83 16 24 C -0.15 -1.40 10.53 -26.94 -0.28 -1.68 16 25 C -0.07 -0.98 7.42 -26.13 -0.19 -1.17 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.67 6.48 -51.93 -0.34 0.33 16 29 H 0.06 1.11 7.57 -51.93 -0.39 0.72 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.02 0.40 7.77 -51.93 -0.40 0.00 16 33 H 0.02 0.45 7.84 -51.93 -0.41 0.05 16 34 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.02 0.50 7.80 -51.93 -0.41 0.10 16 36 H 0.11 3.21 5.87 -51.93 -0.30 2.91 16 37 H 0.40 6.28 7.18 -40.82 -0.29 5.98 16 38 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.10 1.44 7.44 -51.93 -0.39 1.06 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -31.60 361.75 -9.54 -41.14 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.93 Total: 6.32 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.86 Total: -3.59 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.25 Total: -54.74 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.60 -9.54 -41.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975016547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.003 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds