Wall clock time and date at job start Tue Mar 31 2020 06:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.51574 * 135.78124 * 2 1 4 4 C 1.53841 * 86.75741 * 154.84352 * 3 2 1 5 5 C 1.53000 * 113.65664 * 270.22172 * 4 3 2 6 6 C 1.50694 * 113.66052 * 139.27261 * 4 3 2 7 7 O 1.21287 * 120.00169 * 1.66032 * 6 4 3 8 8 N 1.34784 * 120.00124 * 181.66912 * 6 4 3 9 9 C 1.46495 * 119.99824 * 179.97438 * 8 6 4 10 10 H 1.08994 * 110.89458 * 31.11702 * 9 8 6 11 11 C 1.54912 * 111.03762 * 267.20975 * 9 8 6 12 12 N 1.47424 * 104.83543 * 278.92514 * 11 9 8 13 13 C 1.36936 * 125.65065 * 155.91050 * 12 11 9 14 14 H 1.08001 * 119.99808 * 179.97438 * 13 12 11 15 15 C 1.38810 * 120.00034 * 359.97438 * 13 12 11 16 16 N 1.31619 * 119.99874 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00171 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46901 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46893 * 119.99843 * 17 15 13 20 20 H 1.48492 * 109.47221 * 239.99804 * 17 15 13 21 21 C 1.47493 * 108.75718 * 335.89139 * 12 11 9 22 22 C 1.54327 * 107.03526 * 1.02396 * 21 12 11 23 23 C 1.52997 * 110.72022 * 263.79028 * 22 21 12 24 24 C 1.53003 * 110.72011 * 140.68942 * 22 21 12 25 25 C 1.51771 * 135.74812 * 179.88653 * 2 1 3 26 26 H 1.08006 * 120.00114 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.00044 * 179.97438 * 1 2 3 28 28 H 1.09004 * 113.66665 * 40.37957 * 3 2 1 29 29 H 1.09002 * 113.67058 * 269.30597 * 3 2 1 30 30 H 1.08994 * 109.47343 * 298.33246 * 5 4 3 31 31 H 1.08999 * 109.47272 * 58.33769 * 5 4 3 32 32 H 1.09005 * 109.47179 * 178.33298 * 5 4 3 33 33 H 0.96996 * 119.99900 * 359.97438 * 8 6 4 34 34 H 1.09000 * 110.36258 * 37.76535 * 11 9 8 35 35 H 1.09004 * 110.36640 * 159.97221 * 11 9 8 36 36 H 0.97001 * 119.99999 * 180.02562 * 16 15 13 37 37 H 1.08995 * 110.03170 * 241.66546 * 21 12 11 38 38 H 1.08995 * 109.96421 * 120.35012 * 21 12 11 39 39 H 1.09002 * 109.47153 * 296.15592 * 23 22 21 40 40 H 1.09001 * 109.46832 * 176.15783 * 23 22 21 41 41 H 1.09004 * 109.47261 * 56.15765 * 23 22 21 42 42 H 1.08996 * 109.47098 * 183.84045 * 24 22 21 43 43 H 1.08997 * 109.47255 * 303.84574 * 24 22 21 44 44 H 1.09001 * 109.46544 * 63.84147 * 24 22 21 45 45 H 1.08993 * 113.67011 * 90.72886 * 25 2 1 46 46 H 1.08997 * 113.72300 * 319.59684 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3963 1.0571 0.0000 4 6 3.3035 0.0000 0.6529 5 6 3.2460 0.0016 2.1818 6 6 4.7129 0.0000 0.1196 7 8 5.0425 0.8078 -0.7230 8 7 5.6073 -0.8977 0.5788 9 6 6.9772 -0.8980 0.0598 10 1 7.2869 0.1087 -0.2207 11 6 7.1197 -1.8754 -1.1335 12 7 7.2776 -3.2047 -0.5159 13 6 6.9803 -4.4017 -1.1110 14 1 7.1324 -5.3251 -0.5720 15 6 6.4835 -4.4281 -2.4069 16 7 6.2987 -3.3026 -3.0638 17 14 6.0787 -6.0609 -3.2189 18 1 6.3743 -7.1693 -2.2760 19 1 4.6387 -6.0901 -3.5808 20 1 6.9006 -6.2210 -4.4452 21 6 7.8092 -3.0333 0.8492 22 6 7.9613 -1.5162 1.0880 23 6 9.3952 -1.0646 0.8041 24 6 7.5529 -1.1494 2.5162 25 6 2.3971 -1.0591 0.0021 26 1 -0.5401 0.9354 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 2.1795 1.9073 0.6468 29 1 2.7184 1.3536 -0.9982 30 1 3.5888 0.9656 2.5574 31 1 2.2201 -0.1712 2.5070 32 1 3.8882 -0.7889 2.5704 33 1 5.3438 -1.5436 1.2528 34 1 6.2239 -1.8494 -1.7541 35 1 7.9988 -1.6241 -1.7269 36 1 5.9512 -3.3210 -3.9693 37 1 8.7800 -3.5213 0.9358 38 1 7.1139 -3.4550 1.5750 39 1 10.0736 -1.5440 1.5099 40 1 9.4634 0.0178 0.9126 41 1 9.6703 -1.3459 -0.2125 42 1 7.6027 -0.0679 2.6418 43 1 6.5344 -1.4904 2.7018 44 1 8.2309 -1.6289 3.2223 45 1 2.7194 -1.3573 -0.9955 46 1 2.1809 -1.9081 0.6506 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975035401.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:13 Heat of formation + Delta-G solvation = 26.973700 kcal Electronic energy + Delta-G solvation = -25073.659782 eV Core-core repulsion = 21772.080673 eV Total energy + Delta-G solvation = -3301.579110 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42077 -38.79774 -37.03701 -33.80445 -33.04386 -31.36219 -30.66926 -28.19001 -27.59436 -26.80571 -25.79719 -25.60409 -23.88063 -22.46804 -20.20316 -19.35050 -18.46954 -17.62712 -16.74830 -16.57366 -15.85516 -15.02391 -14.71189 -14.55711 -14.27663 -13.91257 -13.76548 -13.73224 -13.36279 -13.11448 -12.77056 -12.44316 -12.16969 -11.99436 -11.90897 -11.86745 -11.64910 -11.36871 -11.25486 -11.15421 -10.94600 -10.85070 -10.77158 -10.37992 -10.16685 -10.13810 -9.93852 -9.78722 -9.67528 -9.24315 -9.01050 -8.67262 -8.28636 -6.80420 -5.62496 -3.05396 2.25453 3.12718 3.39245 3.44669 3.47479 3.71727 4.41166 4.48768 4.56222 4.63548 4.98627 5.02500 5.20402 5.27329 5.31562 5.38550 5.52869 5.63421 5.66478 5.71844 5.80644 5.83207 5.85316 5.89545 5.94664 6.02199 6.04852 6.11612 6.14886 6.20966 6.28740 6.30538 6.43712 6.43918 6.49894 6.63062 6.71174 6.80016 6.96480 7.03961 7.51866 7.63244 7.89149 8.10849 8.39446 8.78617 9.22722 9.83935 10.48511 11.39979 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.006429 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.277479 B = 4354.459426 C = 5953.686508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C -0.080 4.080 4 C -0.105 4.105 5 C -0.123 4.123 6 C 0.530 3.470 7 O -0.546 6.546 8 N -0.697 5.697 9 C 0.123 3.877 10 H 0.087 0.913 11 C 0.147 3.853 12 N -0.601 5.601 13 C -0.223 4.223 14 H 0.076 0.924 15 C -0.009 4.009 16 N -0.917 5.917 17 Si 0.911 3.089 18 H -0.281 1.281 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.143 3.857 22 C -0.088 4.088 23 C -0.128 4.128 24 C -0.130 4.130 25 C -0.087 4.087 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.396 0.604 34 H 0.112 0.888 35 H 0.019 0.981 36 H 0.251 0.749 37 H 0.024 0.976 38 H 0.022 0.978 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.102 0.898 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.302 7.051 11.770 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.141 4.141 3 C -0.117 4.117 4 C -0.109 4.109 5 C -0.181 4.181 6 C 0.316 3.684 7 O -0.424 6.424 8 N -0.346 5.346 9 C 0.017 3.983 10 H 0.105 0.895 11 C 0.021 3.979 12 N -0.327 5.327 13 C -0.351 4.351 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.565 5.565 17 Si 0.742 3.258 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.218 1.218 21 C 0.017 3.983 22 C -0.089 4.089 23 C -0.186 4.186 24 C -0.187 4.187 25 C -0.125 4.125 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.231 0.769 34 H 0.130 0.870 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.120 0.880 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.104 7.527 10.968 14.248 hybrid contribution -0.219 -1.316 -0.184 1.347 sum -5.324 6.211 10.783 13.535 Atomic orbital electron populations 1.22795 0.93376 1.01870 1.03778 1.22938 0.93863 0.98409 0.98884 1.22219 0.92061 0.95208 1.02212 1.21931 0.92099 1.00002 0.96822 1.21546 1.02565 1.02373 0.91583 1.20054 0.86071 0.80665 0.81659 1.90659 1.79386 1.39913 1.32403 1.45768 1.11279 1.34534 1.43045 1.22510 0.79868 1.00246 0.95684 0.89537 1.22287 1.02550 0.81723 0.91298 1.44577 1.75160 1.02768 1.10220 1.19073 1.35851 0.84028 0.96179 0.90575 1.24779 1.01845 0.97043 0.96860 1.69822 1.51292 1.23587 1.11790 0.86056 0.77692 0.82783 0.79302 1.20619 1.21851 1.21806 1.21489 0.96421 0.91719 0.88705 1.21847 0.95527 0.96986 0.94574 1.21686 0.94439 1.00119 1.02333 1.21707 1.00696 1.00826 0.95500 1.22338 0.92553 0.95474 1.02101 0.87861 0.87806 0.90719 0.87542 0.91853 0.91537 0.91924 0.76927 0.87044 0.96322 0.93797 0.95821 0.96055 0.92759 0.93129 0.91795 0.92895 0.92976 0.92837 0.87971 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 14.71 29.01 0.43 -1.55 16 2 C -0.14 -1.79 6.60 -100.19 -0.66 -2.46 16 3 C -0.08 -1.08 6.97 -27.02 -0.19 -1.27 16 4 C -0.11 -1.48 1.26 -154.87 -0.19 -1.68 16 5 C -0.12 -1.35 8.99 37.16 0.33 -1.02 16 6 C 0.53 9.51 6.92 -10.98 -0.08 9.43 16 7 O -0.55 -11.80 15.55 5.55 0.09 -11.71 16 8 N -0.70 -12.17 4.42 -51.73 -0.23 -12.40 16 9 C 0.12 2.36 2.67 -65.78 -0.18 2.19 16 10 H 0.09 1.73 7.44 -51.93 -0.39 1.34 16 11 C 0.15 3.59 5.27 -2.53 -0.01 3.58 16 12 N -0.60 -14.85 3.41 -169.69 -0.58 -15.42 16 13 C -0.22 -6.09 10.28 -15.06 -0.15 -6.25 16 14 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -26.91 10.09 55.49 0.56 -26.35 16 17 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 C 0.14 2.83 6.45 -2.80 -0.02 2.81 16 22 C -0.09 -1.46 0.80 -152.67 -0.12 -1.58 16 23 C -0.13 -1.95 8.41 37.16 0.31 -1.64 16 24 C -0.13 -1.70 8.11 37.16 0.30 -1.40 16 25 C -0.09 -1.25 7.19 -26.92 -0.19 -1.44 16 26 H 0.10 0.97 8.06 -52.48 -0.42 0.55 16 27 H 0.10 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 29 H 0.11 1.65 7.44 -51.93 -0.39 1.26 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.65 7.70 -51.93 -0.40 0.25 16 32 H 0.06 0.64 7.12 -51.93 -0.37 0.27 16 33 H 0.40 6.30 6.15 -40.82 -0.25 6.05 16 34 H 0.11 3.17 5.88 -51.93 -0.31 2.86 16 35 H 0.02 0.50 7.76 -51.93 -0.40 0.10 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 37 H 0.02 0.48 7.84 -51.93 -0.41 0.07 16 38 H 0.02 0.41 7.80 -51.93 -0.41 0.01 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.10 7.51 -51.93 -0.39 0.71 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.65 6.43 -51.93 -0.33 0.32 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 46 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -31.07 360.76 -8.07 -39.14 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.80 Total: 6.87 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -0.52 Total: -2.64 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.25 Total: -54.17 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.07 -8.07 -39.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975035401.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.111 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds