Wall clock time and date at job start Tue Mar 31 2020 06:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 110.91361 * 2 1 4 4 C 1.54903 * 111.00558 * 236.10118 * 2 1 3 5 5 N 1.47436 * 104.82903 * 278.93321 * 4 2 1 6 6 C 1.36931 * 125.64540 * 155.91142 * 5 4 2 7 7 H 1.08000 * 120.00228 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99998 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99632 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00256 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47082 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47060 * 120.00363 * 10 8 6 13 13 H 1.48501 * 109.46913 * 239.99946 * 10 8 6 14 14 C 1.47489 * 108.75932 * 335.89139 * 5 4 2 15 15 C 1.54327 * 107.03295 * 1.02694 * 14 5 4 16 16 H 1.08998 * 110.71717 * 140.69114 * 15 14 5 17 17 N 1.46498 * 110.71777 * 263.78809 * 15 14 5 18 18 C 1.34777 * 119.99828 * 270.88040 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 H 1.09003 * 115.55335 * 34.41461 * 20 18 17 22 22 C 1.53121 * 117.51452 * 248.68519 * 20 18 17 23 23 C 1.52450 * 117.51666 * 180.15409 * 20 18 17 24 24 C 1.53260 * 128.58442 * 349.84870 * 23 20 18 25 25 C 1.53887 * 86.88353 * 194.88530 * 24 23 20 26 26 C 1.53255 * 128.58743 * 225.05122 * 23 20 18 27 27 H 1.09005 * 109.46945 * 296.09791 * 1 2 3 28 28 H 1.09001 * 109.47031 * 56.09941 * 1 2 3 29 29 H 1.08999 * 109.46639 * 176.09813 * 1 2 3 30 30 H 1.08995 * 109.46669 * 183.89923 * 3 2 1 31 31 H 1.09001 * 109.47008 * 303.90121 * 3 2 1 32 32 H 1.09003 * 109.46993 * 63.90101 * 3 2 1 33 33 H 1.09002 * 110.36821 * 37.76835 * 4 2 1 34 34 H 1.08995 * 110.36606 * 159.98905 * 4 2 1 35 35 H 0.97001 * 119.99638 * 179.97438 * 9 8 6 36 36 H 1.08992 * 110.03102 * 241.66523 * 14 5 4 37 37 H 1.09001 * 109.96057 * 120.34465 * 14 5 4 38 38 H 0.97001 * 120.00384 * 91.16487 * 17 15 14 39 39 H 1.09004 * 117.51387 * 359.97438 * 22 20 18 40 40 H 1.08998 * 117.51426 * 145.05809 * 22 20 18 41 41 H 1.09001 * 113.64714 * 309.38676 * 24 23 20 42 42 H 1.09000 * 113.64326 * 80.39066 * 24 23 20 43 43 H 1.08997 * 113.59386 * 270.39087 * 25 24 23 44 44 H 1.08999 * 113.65821 * 139.58272 * 25 24 23 45 45 H 1.08996 * 113.64582 * 279.60829 * 26 23 20 46 46 H 1.08997 * 113.64796 * 50.52197 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4293 0.0000 4 6 2.0853 -0.8065 -1.2003 5 7 2.0140 -2.2159 -0.7733 6 6 1.9462 -3.2999 -1.6071 7 1 1.9424 -3.1582 -2.6778 8 6 1.8835 -4.5810 -1.0763 9 7 1.8886 -4.7537 0.2285 10 14 1.7918 -6.0599 -2.2138 11 1 1.8015 -5.5998 -3.6257 12 1 2.9614 -6.9427 -1.9733 13 1 0.5401 -6.8130 -1.9466 14 6 2.0281 -2.2662 0.7007 15 6 2.0862 -0.8079 1.2023 16 1 1.4541 -0.6767 2.0805 17 7 3.4667 -0.4155 1.4962 18 6 3.9794 -0.6241 2.7251 19 8 3.2996 -1.1412 3.5861 20 6 5.3975 -0.2148 3.0294 21 1 5.7455 0.6864 2.5245 22 6 6.4192 -1.3295 3.2707 23 6 5.9208 -0.4804 4.4364 24 6 5.1404 -0.9248 5.6783 25 6 6.3744 -0.5102 6.4989 26 6 6.7222 0.4530 5.3502 27 1 -0.3633 0.4521 0.9229 28 1 -0.3633 0.5732 -0.8530 29 1 -0.3632 -1.0253 -0.0699 30 1 3.1636 1.4026 -0.0699 31 1 1.6705 1.9733 -0.8530 32 1 1.7836 1.9300 0.9229 33 1 1.4672 -0.6461 -2.0837 34 1 3.1176 -0.5218 -1.4036 35 1 1.8444 -5.6489 0.5994 36 1 2.9052 -2.8126 1.0472 37 1 1.1207 -2.7477 1.0653 38 1 4.0105 -0.0019 0.8076 39 1 6.0653 -2.3587 3.2098 40 1 7.4390 -1.1615 2.9247 41 1 4.2573 -0.3184 5.8800 42 1 4.9361 -1.9951 5.7065 43 1 7.1005 -1.3125 6.6304 44 1 6.1290 -0.0047 7.4329 45 1 7.7860 0.4873 5.1154 46 1 6.2804 1.4434 5.4593 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975086556.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:27 Heat of formation + Delta-G solvation = 34.313930 kcal Electronic energy + Delta-G solvation = -24567.123787 eV Core-core repulsion = 21265.862973 eV Total energy + Delta-G solvation = -3301.260813 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.20646 -38.99071 -37.39793 -33.79316 -33.54920 -32.83344 -30.66212 -28.16753 -26.85074 -25.65159 -25.60631 -24.31049 -23.06167 -22.75163 -20.34926 -19.69135 -18.76378 -18.11405 -16.87454 -16.60670 -15.87429 -15.19944 -15.01145 -14.64184 -14.48854 -13.99114 -13.84448 -13.62513 -13.25391 -12.73150 -12.46440 -12.31771 -12.04438 -11.95459 -11.91015 -11.64708 -11.51006 -11.43405 -11.33053 -11.04413 -10.95999 -10.77737 -10.35981 -10.29648 -10.20336 -10.01473 -9.97369 -9.83687 -9.69771 -9.61552 -9.23952 -8.60789 -8.34558 -6.79975 -5.66628 -3.01313 2.92455 3.41345 3.46466 3.49431 3.52572 3.90716 4.47613 4.52463 4.63885 4.82078 4.85001 4.93430 4.98262 5.26903 5.32211 5.35364 5.36610 5.55882 5.57642 5.65165 5.72517 5.74467 5.80177 5.84061 5.84988 5.94381 6.05449 6.07368 6.18788 6.22947 6.23845 6.27783 6.34442 6.42190 6.43435 6.61236 6.64188 6.70518 6.82008 7.01172 7.59164 7.69266 7.86693 8.05387 8.27894 8.75609 9.24178 9.85305 10.51125 11.44087 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.004676 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.422502 B = 5986.340651 C = 7138.462064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.145 3.855 5 N -0.603 5.603 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.909 3.091 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.177 3.823 15 C 0.125 3.875 16 H 0.086 0.914 17 N -0.707 5.707 18 C 0.541 3.459 19 O -0.537 6.537 20 C -0.176 4.176 21 H 0.117 0.883 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.081 4.081 25 C -0.142 4.142 26 C -0.099 4.099 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.015 0.985 35 H 0.252 0.748 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.394 0.606 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.411 13.511 6.628 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 C -0.188 4.188 4 C 0.018 3.982 5 N -0.330 5.330 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.052 3.948 15 C 0.020 3.980 16 H 0.104 0.896 17 N -0.358 5.358 18 C 0.327 3.673 19 O -0.414 6.414 20 C -0.198 4.198 21 H 0.135 0.865 22 C -0.159 4.159 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.180 4.180 26 C -0.136 4.136 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.032 0.968 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.229 0.771 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.886 12.886 7.257 16.313 hybrid contribution 0.266 -0.655 -1.152 1.352 sum 7.152 12.231 6.105 15.427 Atomic orbital electron populations 1.21597 0.93358 1.02907 1.00451 1.22013 0.96309 0.94122 0.96722 1.21668 1.00229 0.95614 1.01255 1.21610 0.96486 0.85785 0.94278 1.44565 1.86896 0.99675 1.01866 1.19076 1.43688 0.84038 0.88921 0.90472 1.24802 1.02297 0.97341 0.95923 1.69981 1.56795 1.20647 1.09150 0.86082 0.77244 0.83070 0.79586 1.20564 1.21853 1.21782 1.21585 1.01492 0.88594 0.83163 1.22448 0.81241 0.97469 0.96854 0.89607 1.45945 1.14823 1.62684 1.12320 1.19489 0.87191 0.78382 0.82272 1.90679 1.61024 1.43141 1.46596 1.22155 0.93726 1.01970 1.01906 0.86487 1.22809 0.97666 0.96264 0.99168 1.22258 1.01082 1.01480 0.87991 1.22302 0.96056 1.01892 0.91612 1.22813 0.98963 0.99297 0.96905 1.22492 0.99031 0.97310 0.94740 0.93388 0.92932 0.91217 0.93064 0.92720 0.92921 0.94193 0.96776 0.93784 0.93384 0.92970 0.77093 0.87791 0.87915 0.89517 0.91163 0.90276 0.91484 0.91496 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.57 37.16 0.32 -1.72 16 2 C -0.09 -1.51 0.83 -152.36 -0.13 -1.64 16 3 C -0.13 -1.70 8.22 37.16 0.31 -1.39 16 4 C 0.14 2.89 6.14 -2.53 -0.02 2.87 16 5 N -0.60 -15.19 3.39 -169.69 -0.58 -15.76 16 6 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -27.63 10.31 55.49 0.57 -27.06 16 10 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 C 0.18 4.40 4.82 -2.81 -0.01 4.39 16 15 C 0.12 2.42 2.54 -66.10 -0.17 2.25 16 16 H 0.09 1.75 7.52 -51.93 -0.39 1.36 16 17 N -0.71 -12.01 4.51 -52.03 -0.23 -12.25 16 18 C 0.54 9.47 7.61 -10.98 -0.08 9.39 16 19 O -0.54 -11.32 14.82 5.55 0.08 -11.24 16 20 C -0.18 -2.38 6.19 -91.99 -0.57 -2.95 16 21 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 22 C -0.12 -1.56 10.24 -26.88 -0.28 -1.83 16 23 C -0.13 -1.61 2.88 -154.74 -0.45 -2.05 16 24 C -0.08 -1.08 6.47 -26.13 -0.17 -1.25 16 25 C -0.14 -1.43 8.08 -25.81 -0.21 -1.64 16 26 C -0.10 -0.97 8.10 -26.14 -0.21 -1.18 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 30 H 0.05 0.62 6.43 -51.93 -0.33 0.29 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 34 H 0.01 0.28 7.98 -51.93 -0.41 -0.13 16 35 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.05 1.37 7.41 -51.93 -0.38 0.99 16 37 H 0.05 1.47 7.39 -51.93 -0.38 1.09 16 38 H 0.39 5.84 7.01 -40.82 -0.29 5.55 16 39 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -32.04 361.96 -9.70 -41.74 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -8.06 Total: 5.35 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.91 Total: -3.58 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.24 Total: -55.07 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.04 -9.70 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975086556.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.051 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds