Wall clock time and date at job start Tue Mar 31 2020 06:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.47093 * 120.00158 * 2 1 4 4 O 1.21621 * 120.00217 * 80.35557 * 3 2 1 5 5 N 1.34777 * 120.00169 * 260.35473 * 3 2 1 6 6 C 1.46498 * 119.99927 * 355.13109 * 5 3 2 7 7 C 1.46503 * 120.00154 * 175.13216 * 5 3 2 8 8 C 1.53779 * 113.61490 * 120.00125 * 7 5 3 9 9 C 1.53782 * 87.07975 * 89.19863 * 8 7 5 10 10 N 1.46507 * 113.61367 * 139.98357 * 9 8 7 11 11 C 1.36934 * 120.00091 * 156.52971 * 10 9 8 12 12 H 1.07994 * 120.00119 * 359.97438 * 11 10 9 13 13 C 1.38810 * 119.99619 * 179.97438 * 11 10 9 14 14 N 1.31610 * 120.00506 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99762 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47390 * 89.99769 * 15 13 11 17 17 H 1.48499 * 109.47128 * 209.99658 * 15 13 11 18 18 H 1.48502 * 109.46959 * 330.00099 * 15 13 11 19 19 C 1.53778 * 87.17467 * 25.39278 * 9 8 7 20 20 C 1.33005 * 119.99892 * 179.97438 * 2 1 3 21 21 C 1.51445 * 126.33855 * 179.68591 * 20 2 1 22 22 C 1.54282 * 106.84785 * 180.24494 * 21 20 2 23 23 C 1.54984 * 103.66038 * 23.48411 * 22 21 20 24 24 C 1.51839 * 126.34045 * 0.02562 * 20 2 1 25 25 H 1.08996 * 109.47436 * 85.54348 * 1 2 3 26 26 H 1.09008 * 109.47439 * 205.54972 * 1 2 3 27 27 H 1.08999 * 109.47181 * 325.54381 * 1 2 3 28 28 H 1.08999 * 109.47172 * 264.57892 * 6 5 3 29 29 H 1.09004 * 109.47218 * 24.57444 * 6 5 3 30 30 H 1.08998 * 109.47229 * 144.57825 * 6 5 3 31 31 H 1.08996 * 112.84909 * 348.80094 * 7 5 3 32 32 H 1.08999 * 113.61532 * 334.64749 * 8 7 5 33 33 H 1.09000 * 113.60999 * 203.74643 * 8 7 5 34 34 H 1.09003 * 113.61357 * 270.79398 * 9 8 7 35 35 H 0.97007 * 119.99705 * 336.52058 * 10 9 8 36 36 H 0.97001 * 120.00298 * 180.02562 * 14 13 11 37 37 H 1.08992 * 113.61849 * 89.15888 * 19 9 8 38 38 H 1.09006 * 113.60928 * 220.06239 * 19 9 8 39 39 H 1.08997 * 109.98765 * 299.72711 * 21 20 2 40 40 H 1.08994 * 109.98525 * 61.03274 * 21 20 2 41 41 H 1.09000 * 110.79180 * 264.85937 * 22 21 20 42 42 H 1.09001 * 110.42618 * 141.93718 * 22 21 20 43 43 H 1.08999 * 110.83237 * 204.49068 * 23 22 21 44 44 H 1.08997 * 110.83329 * 80.91317 * 23 22 21 45 45 H 1.08997 * 110.44102 * 274.92651 * 24 20 2 46 46 H 1.09000 * 110.44051 * 37.32482 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2424 1.2738 0.0000 4 8 2.3937 1.8887 1.0384 5 7 2.7488 1.7597 -1.1507 6 6 2.6602 0.9696 -2.3812 7 6 3.3878 3.0779 -1.1710 8 6 4.8600 3.0420 -1.6137 9 6 4.3491 3.2108 -3.0543 10 7 5.1684 4.1148 -3.8655 11 6 5.1576 4.0092 -5.2307 12 1 4.5454 3.2593 -5.7095 13 6 5.9335 4.8661 -5.9992 14 7 6.6791 5.7803 -5.4157 15 14 5.9193 4.7217 -7.8615 16 1 4.8513 5.5911 -8.4174 17 1 7.2354 5.1480 -8.4011 18 1 5.6596 3.3112 -8.2467 19 6 3.1029 3.8816 -2.4528 20 6 2.1719 -1.1519 0.0005 21 6 3.6771 -1.3191 -0.0061 22 6 3.9585 -2.8361 -0.0089 23 6 2.6646 -3.4472 -0.6042 24 6 1.5626 -2.5426 0.0006 25 1 -0.3634 0.0798 -1.0245 26 1 -0.3634 -0.9272 0.4432 27 1 -0.3633 0.8474 0.5814 28 1 3.5853 0.4106 -2.5214 29 1 1.8235 0.2748 -2.3074 30 1 2.5058 1.6355 -3.2302 31 1 3.2211 3.6431 -0.2541 32 1 5.3472 2.0840 -1.4326 33 1 5.4443 3.8896 -1.2555 34 1 4.1376 2.2665 -3.5560 35 1 5.7185 4.7882 -3.4354 36 1 7.2210 6.3793 -5.9528 37 1 3.2059 4.9590 -2.3246 38 1 2.1736 3.6002 -2.9483 39 1 4.0993 -0.8583 -0.8991 40 1 4.1064 -0.8643 0.8866 41 1 4.1231 -3.2009 1.0049 42 1 4.8159 -3.0627 -0.6426 43 1 2.5392 -4.4804 -0.2802 44 1 2.6683 -3.3786 -1.6920 45 1 1.3291 -2.8559 1.0181 46 1 0.6661 -2.5655 -0.6190 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998613824.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:37 Heat of formation + Delta-G solvation = 5.120394 kcal Electronic energy + Delta-G solvation = -24067.944872 eV Core-core repulsion = 20765.418131 eV Total energy + Delta-G solvation = -3302.526740 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46642 -38.68429 -37.65361 -34.56291 -33.66334 -32.69468 -29.99775 -29.23700 -27.82891 -27.17569 -25.29509 -25.03200 -23.92239 -22.08751 -21.00424 -20.50165 -18.87174 -17.85989 -17.07766 -16.73232 -16.14635 -15.89857 -15.43736 -14.90380 -14.50005 -14.12005 -13.84989 -13.65959 -13.49464 -13.25779 -13.04831 -12.70554 -12.59708 -12.42761 -12.28139 -11.99280 -11.82556 -11.62019 -11.47509 -11.42545 -11.34263 -11.25361 -10.91646 -10.88269 -10.76454 -10.36771 -10.22250 -9.88117 -9.64164 -9.49250 -8.90500 -8.81967 -8.43170 -6.99088 -5.80732 -3.09782 1.61660 2.65699 3.13140 3.40621 3.45601 3.47579 4.13356 4.40867 4.56407 4.61258 4.74583 4.85542 5.09117 5.11114 5.12880 5.15631 5.22531 5.31838 5.42044 5.43732 5.46955 5.48560 5.53569 5.57837 5.59449 5.63999 5.74859 5.77740 5.82651 5.85437 5.87177 5.98313 6.02379 6.15317 6.21887 6.30699 6.34425 6.47616 6.51935 6.57549 6.73610 7.11229 7.52359 7.65443 8.24679 8.37542 9.48756 10.06834 10.41255 11.41648 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.003538 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.987309 B = 7912.023184 C = 8476.323520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.159 4.159 3 C 0.562 3.438 4 O -0.543 6.543 5 N -0.584 5.584 6 C 0.070 3.930 7 C 0.114 3.886 8 C -0.161 4.161 9 C 0.161 3.839 10 N -0.713 5.713 11 C -0.245 4.245 12 H 0.071 0.929 13 C -0.012 4.012 14 N -0.931 5.931 15 Si 0.906 3.094 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.282 1.282 19 C -0.174 4.174 20 C -0.085 4.085 21 C -0.104 4.104 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.092 4.092 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 -17.719 10.425 23.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.162 4.162 3 C 0.350 3.650 4 O -0.421 6.421 5 N -0.315 5.315 6 C -0.072 4.072 7 C 0.010 3.990 8 C -0.201 4.201 9 C 0.049 3.951 10 N -0.351 5.351 11 C -0.376 4.376 12 H 0.088 0.912 13 C -0.208 4.208 14 N -0.579 5.579 15 Si 0.737 3.263 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.207 1.207 19 C -0.216 4.216 20 C -0.086 4.086 21 C -0.141 4.141 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.129 4.129 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.951 -17.421 10.740 23.211 hybrid contribution 0.271 0.303 -0.943 1.027 sum -10.679 -17.118 9.796 22.429 Atomic orbital electron populations 1.20598 0.89621 1.03037 1.02359 1.20695 0.96555 0.91724 1.07195 1.18421 0.78266 0.85040 0.83271 1.90784 1.59565 1.60241 1.31464 1.47541 1.57028 1.18224 1.08754 1.22000 1.01788 0.96040 0.87408 1.21951 0.94130 0.83039 0.99922 1.23838 0.95241 1.01857 0.99161 1.21852 0.90240 0.93771 0.89205 1.42429 1.51237 1.38221 1.03178 1.19272 1.21618 1.13957 0.82749 0.91151 1.24761 0.99551 0.98469 0.98015 1.69655 1.31704 1.22251 1.34324 0.86204 0.76938 0.77487 0.85631 1.21676 1.21751 1.20727 1.24285 1.01395 1.00497 0.95423 1.22446 0.95843 0.93586 0.96720 1.21316 0.92669 0.97166 1.02958 1.22351 0.97977 0.94419 1.01236 1.22503 0.94407 0.98565 1.00551 1.21450 0.98384 0.91506 1.01554 0.91094 0.91166 0.91350 0.92379 0.91086 0.89767 0.88264 0.92095 0.89405 0.90260 0.78065 0.93417 0.89235 0.92212 0.90151 0.90629 0.91377 0.91131 0.91159 0.90999 0.90118 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 9.66 36.00 0.35 -0.57 16 2 C -0.16 -1.85 3.91 -102.85 -0.40 -2.25 16 3 C 0.56 8.50 6.44 -12.67 -0.08 8.42 16 4 O -0.54 -10.25 16.61 5.26 0.09 -10.17 16 5 N -0.58 -8.41 3.08 -174.29 -0.54 -8.95 16 6 C 0.07 0.85 8.14 59.85 0.49 1.34 16 7 C 0.11 1.84 4.44 -67.02 -0.30 1.54 16 8 C -0.16 -2.77 7.49 -25.92 -0.19 -2.96 16 9 C 0.16 3.11 3.81 -67.12 -0.26 2.85 16 10 N -0.71 -17.60 5.41 -52.64 -0.28 -17.88 16 11 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 12 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 13 C -0.01 -0.33 5.50 -17.44 -0.10 -0.43 16 14 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 15 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.17 -3.02 7.11 -25.83 -0.18 -3.20 16 20 C -0.08 -0.86 5.75 -100.24 -0.58 -1.44 16 21 C -0.10 -1.07 5.90 -26.85 -0.16 -1.23 16 22 C -0.12 -0.97 6.88 -25.01 -0.17 -1.14 16 23 C -0.12 -0.84 6.94 -24.70 -0.17 -1.01 16 24 C -0.09 -0.68 5.64 -26.34 -0.15 -0.83 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.52 6.99 -51.92 -0.36 0.16 16 27 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.06 0.68 7.11 -51.93 -0.37 0.31 16 29 H 0.07 0.71 6.51 -51.93 -0.34 0.38 16 30 H 0.08 1.08 5.18 -51.93 -0.27 0.81 16 31 H 0.10 1.70 7.27 -51.93 -0.38 1.32 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 34 H 0.08 1.47 5.57 -51.93 -0.29 1.18 16 35 H 0.39 10.17 7.91 -40.82 -0.32 9.85 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 38 H 0.06 0.98 7.28 -51.93 -0.38 0.61 16 39 H 0.08 0.88 6.85 -51.93 -0.36 0.52 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.49 7.60 -51.93 -0.39 0.09 16 LS Contribution 360.55 15.07 5.43 5.43 Total: -1.00 -31.82 360.55 -9.30 -41.12 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.65 Total: 8.34 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.05 Total: -7.71 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.10 Total: -54.00 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.82 -9.30 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998613824.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.245 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds