Wall clock time and date at job start Tue Mar 31 2020 08:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47091 * 2 1 4 4 C 1.52991 * 109.47114 * 120.00372 * 2 1 3 5 5 H 1.09003 * 115.56400 * 325.69041 * 4 2 1 6 6 C 1.53080 * 117.49674 * 111.39690 * 4 2 1 7 7 C 1.53003 * 59.98350 * 107.48702 * 6 4 2 8 8 H 1.09001 * 117.49534 * 252.50263 * 7 6 4 9 9 C 1.50702 * 117.49741 * 107.50483 * 7 6 4 10 10 O 1.21284 * 119.99863 * 291.25051 * 9 7 6 11 11 N 1.34777 * 120.00008 * 111.25732 * 9 7 6 12 12 C 1.46492 * 120.00083 * 180.02562 * 11 9 7 13 13 C 1.50704 * 109.47222 * 179.97438 * 12 11 9 14 14 C 1.29447 * 117.69514 * 94.99526 * 13 12 11 15 15 C 1.50324 * 123.65052 * 180.83305 * 14 13 12 16 16 N 1.47007 * 109.16413 * 349.02756 * 15 14 13 17 17 C 1.36944 * 121.37266 * 222.92605 * 16 15 14 18 18 H 1.08000 * 119.99839 * 155.99107 * 17 16 15 19 19 C 1.38814 * 119.99951 * 335.98628 * 17 16 15 20 20 N 1.31623 * 119.99806 * 344.50275 * 19 17 16 21 21 Si 1.86802 * 119.99932 * 164.50440 * 19 17 16 22 22 H 1.48502 * 109.47020 * 94.45458 * 21 19 17 23 23 H 1.48497 * 109.46876 * 214.45386 * 21 19 17 24 24 H 1.48498 * 109.47006 * 334.45264 * 21 19 17 25 25 C 1.47335 * 117.25457 * 42.94085 * 16 15 14 26 26 C 1.49967 * 117.68861 * 274.97283 * 13 12 11 27 27 H 1.09003 * 109.47070 * 299.99798 * 1 2 3 28 28 H 1.09003 * 109.47445 * 59.99622 * 1 2 3 29 29 H 1.09000 * 109.47562 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47070 * 240.00202 * 2 1 3 31 31 H 1.09002 * 109.47212 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47489 * 299.99728 * 3 2 1 33 33 H 1.08993 * 109.47426 * 60.00499 * 3 2 1 34 34 H 1.09001 * 117.49183 * 359.97438 * 6 4 2 35 35 H 1.08997 * 117.53212 * 214.95259 * 6 4 2 36 36 H 0.96997 * 119.99618 * 359.97438 * 11 9 7 37 37 H 1.08999 * 109.47449 * 59.98914 * 12 11 9 38 38 H 1.09011 * 109.46749 * 299.99490 * 12 11 9 39 39 H 1.08001 * 118.17765 * 1.11870 * 14 13 12 40 40 H 1.08999 * 109.52205 * 108.92567 * 15 14 13 41 41 H 1.08993 * 109.52633 * 229.11934 * 15 14 13 42 42 H 0.96997 * 119.99711 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.77054 * 57.81428 * 25 16 15 44 44 H 1.08999 * 109.78082 * 178.61614 * 25 16 15 45 45 H 1.09007 * 109.31695 * 40.74414 * 26 13 12 46 46 H 1.08998 * 109.16735 * 281.21574 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2491 5 1 1.4310 -0.5984 2.1448 6 6 2.7426 -2.0668 1.0510 7 6 3.5550 -0.8282 1.4342 8 1 4.1883 -0.3843 0.6661 9 6 4.0911 -0.7555 2.8408 10 8 3.3288 -0.6155 3.7737 11 7 5.4175 -0.8459 3.0619 12 6 5.9386 -0.7757 4.4292 13 6 7.4401 -0.9016 4.4017 14 6 8.1354 0.1903 4.3964 15 6 9.6376 0.2210 4.3517 16 7 10.1551 -1.1357 4.5812 17 6 11.2276 -1.3602 5.4026 18 1 11.3594 -2.3265 5.8667 19 6 12.1453 -0.3458 5.6388 20 7 12.1702 0.7138 4.8584 21 14 13.3448 -0.4847 7.0640 22 1 14.6244 -1.0620 6.5796 23 1 13.5944 0.8636 7.6340 24 1 12.7691 -1.3660 8.1114 25 6 9.4726 -2.2439 3.8907 26 6 8.0233 -2.2831 4.3829 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.8408 -2.4377 0.0307 35 1 2.5962 -2.8291 1.8161 36 1 6.0270 -0.9581 2.3157 37 1 5.5169 -1.5883 5.0209 38 1 5.6618 0.1798 4.8749 39 1 7.6069 1.1315 4.4305 40 1 9.9657 0.5755 3.3746 41 1 10.0115 0.8895 5.1271 42 1 12.8118 1.4225 5.0232 43 1 9.4920 -2.0752 2.8139 44 1 9.9677 -3.1860 4.1261 45 1 7.4337 -2.9144 3.7180 46 1 7.9961 -2.6968 5.3909 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001317005.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:27 Heat of formation + Delta-G solvation = 6.861102 kcal Electronic energy + Delta-G solvation = -23046.162488 eV Core-core repulsion = 19743.711231 eV Total energy + Delta-G solvation = -3302.451257 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.12933 -38.17778 -37.37226 -34.91356 -33.56327 -32.85047 -30.90185 -29.75641 -27.50269 -27.23633 -24.94252 -23.46734 -23.06347 -22.68418 -21.09860 -20.37775 -19.87549 -17.79120 -17.39970 -16.11719 -15.72457 -15.42065 -15.16022 -14.84140 -14.71689 -14.17843 -13.87762 -13.64799 -13.45327 -13.39758 -13.08228 -12.78811 -12.61689 -12.45758 -12.26149 -12.06008 -11.61479 -11.56773 -11.43779 -11.35489 -10.95513 -10.93728 -10.74849 -10.50447 -10.41127 -10.34387 -10.27729 -9.86997 -9.84986 -9.60757 -8.95092 -8.70596 -8.08197 -6.77518 -5.82669 -3.21360 2.49682 2.57542 3.36106 3.43425 3.44824 3.45999 3.65914 4.36103 4.47173 4.51181 4.59224 4.76972 4.96565 5.01090 5.07065 5.15456 5.31102 5.33441 5.37866 5.38810 5.46899 5.55951 5.58597 5.60855 5.71481 5.81055 5.81320 5.88339 5.93906 6.01792 6.05256 6.14524 6.16390 6.31121 6.45114 6.53769 6.70772 6.84009 7.14170 7.22984 7.30163 7.61479 7.70499 7.79743 8.28272 8.35179 9.16605 9.79367 10.37226 11.27898 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.037822 B = 0.002576 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.128790 B =10867.146485 C =11083.243480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.147 4.147 4 C -0.113 4.113 5 H 0.117 0.883 6 C -0.149 4.149 7 C -0.188 4.188 8 H 0.122 0.878 9 C 0.539 3.461 10 O -0.549 6.549 11 N -0.716 5.716 12 C 0.157 3.843 13 C -0.166 4.166 14 C -0.124 4.124 15 C 0.194 3.806 16 N -0.595 5.595 17 C -0.246 4.246 18 H 0.069 0.931 19 C -0.002 4.002 20 N -0.910 5.910 21 Si 0.905 3.095 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.144 3.856 26 C -0.090 4.090 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.402 0.598 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.254 0.746 43 H 0.023 0.977 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.172 -2.228 -10.658 22.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 C -0.205 4.205 4 C -0.132 4.132 5 H 0.135 0.865 6 C -0.186 4.186 7 C -0.209 4.209 8 H 0.140 0.860 9 C 0.325 3.675 10 O -0.427 6.427 11 N -0.366 5.366 12 C 0.035 3.965 13 C -0.167 4.167 14 C -0.145 4.145 15 C 0.069 3.931 16 N -0.319 5.319 17 C -0.375 4.375 18 H 0.086 0.914 19 C -0.200 4.200 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.017 3.983 26 C -0.129 4.129 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.236 0.764 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.571 -1.989 -9.928 22.035 hybrid contribution 1.065 0.061 0.418 1.146 sum -18.506 -1.928 -9.510 20.896 Atomic orbital electron populations 1.21801 0.94627 1.01871 1.01866 1.20741 0.95971 0.96067 0.95744 1.21829 1.01241 0.95575 1.01812 1.22475 0.92021 0.98428 1.00247 0.86523 1.23088 1.01784 0.90902 1.02862 1.22284 0.96250 1.06255 0.96108 0.85974 1.19677 0.82265 0.75940 0.89603 1.90678 1.57377 1.49842 1.44784 1.46125 1.06866 1.73608 1.10051 1.20456 0.91989 1.01591 0.82498 1.20494 0.92331 0.96270 1.07588 1.23284 0.99785 0.96455 0.94993 1.19759 0.84676 0.88023 1.00636 1.44131 1.33669 1.01136 1.52922 1.19182 0.99942 0.98985 1.19408 0.91359 1.24994 0.97613 0.98215 0.99133 1.70009 1.37970 1.10208 1.37328 0.86239 0.80964 0.77001 0.82355 1.21481 1.21549 1.20464 1.20952 0.90430 0.92489 0.94389 1.20759 0.98232 0.92967 1.00944 0.92459 0.92604 0.92523 0.91049 0.92548 0.92670 0.92410 0.87863 0.88329 0.76351 0.91694 0.91726 0.88800 0.94105 0.88878 0.93600 0.95937 0.92433 0.92858 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.17 37.16 0.34 -0.62 16 2 C -0.07 -0.50 3.07 -90.63 -0.28 -0.78 16 3 C -0.15 -1.13 9.03 37.15 0.34 -0.80 16 4 C -0.11 -1.05 4.67 -90.58 -0.42 -1.48 16 5 H 0.12 1.31 7.64 -51.93 -0.40 0.91 16 6 C -0.15 -1.27 9.88 -26.69 -0.26 -1.54 16 7 C -0.19 -1.88 5.39 -91.77 -0.49 -2.38 16 8 H 0.12 1.03 7.61 -51.93 -0.39 0.63 16 9 C 0.54 7.37 7.61 -10.98 -0.08 7.29 16 10 O -0.55 -9.53 16.26 5.55 0.09 -9.44 16 11 N -0.72 -9.44 5.55 -61.47 -0.34 -9.78 16 12 C 0.16 2.39 5.66 -5.20 -0.03 2.36 16 13 C -0.17 -2.83 5.22 -100.99 -0.53 -3.36 16 14 C -0.12 -2.35 9.47 -35.78 -0.34 -2.69 16 15 C 0.19 4.54 5.23 -5.10 -0.03 4.51 16 16 N -0.60 -14.71 3.01 -173.68 -0.52 -15.23 16 17 C -0.25 -6.68 9.71 -15.06 -0.15 -6.82 16 18 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 19 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 20 N -0.91 -25.99 11.08 55.49 0.61 -25.37 16 21 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.14 2.92 6.58 -3.53 -0.02 2.90 16 26 C -0.09 -1.55 5.94 -28.18 -0.17 -1.71 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.48 7.90 -51.93 -0.41 0.07 16 31 H 0.06 0.45 7.29 -51.93 -0.38 0.07 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.68 8.05 -51.93 -0.42 0.27 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.40 4.63 8.46 -40.82 -0.35 4.28 16 37 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 38 H 0.06 1.03 7.78 -51.92 -0.40 0.62 16 39 H 0.09 1.60 7.73 -52.49 -0.41 1.20 16 40 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.09 2.44 6.41 -51.93 -0.33 2.10 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -30.61 371.00 -9.91 -40.52 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.10 Total: 2.41 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.21 Total: -5.25 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.25 Total: -50.38 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.61 -9.91 -40.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001317005.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.376 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds