Wall clock time and date at job start Tue Mar 31 2020 06:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46877 * 2 1 4 4 C 1.53000 * 115.55957 * 325.68459 * 3 2 1 5 5 C 1.52998 * 117.49769 * 111.37545 * 3 2 1 6 6 C 1.53003 * 117.49702 * 179.97438 * 3 2 1 7 7 H 1.08997 * 117.51563 * 145.03173 * 6 3 2 8 8 C 1.50699 * 117.49694 * 359.97438 * 6 3 2 9 9 O 1.21279 * 120.00253 * 359.97438 * 8 6 3 10 10 N 1.34780 * 119.99638 * 179.97438 * 8 6 3 11 11 C 1.46498 * 119.99851 * 180.02562 * 10 8 6 12 12 C 1.50701 * 109.47140 * 180.02562 * 11 10 8 13 13 C 1.29458 * 117.69110 * 94.98124 * 12 11 10 14 14 C 1.49922 * 123.62825 * 180.62046 * 13 12 11 15 15 N 1.47009 * 109.38817 * 349.43028 * 14 13 12 16 16 C 1.36937 * 121.37081 * 222.83043 * 15 14 13 17 17 H 1.08004 * 119.99678 * 155.38972 * 16 15 14 18 18 C 1.38807 * 120.00653 * 335.38541 * 16 15 14 19 19 N 1.31628 * 119.99854 * 334.26413 * 18 16 15 20 20 Si 1.86799 * 120.00419 * 154.53529 * 18 16 15 21 21 H 1.48494 * 109.47452 * 179.72841 * 20 18 16 22 22 H 1.48507 * 109.47051 * 299.72733 * 20 18 16 23 23 H 1.48495 * 109.46949 * 59.72390 * 20 18 16 24 24 C 1.47334 * 117.24802 * 42.56094 * 15 14 13 25 25 C 1.49972 * 117.69440 * 275.00022 * 12 11 10 26 26 H 1.08999 * 109.46997 * 60.00461 * 1 2 3 27 27 H 1.09002 * 109.46999 * 180.02562 * 1 2 3 28 28 H 1.08989 * 109.47308 * 300.00407 * 1 2 3 29 29 H 1.08995 * 109.47198 * 240.00034 * 2 1 3 30 30 H 1.08999 * 109.46997 * 119.99539 * 2 1 3 31 31 H 1.08999 * 109.47494 * 274.31075 * 4 3 2 32 32 H 1.08996 * 109.47429 * 34.31681 * 4 3 2 33 33 H 1.09004 * 109.46884 * 154.31344 * 4 3 2 34 34 H 1.08993 * 117.49905 * 0.02562 * 5 3 2 35 35 H 1.08999 * 117.51600 * 214.96905 * 5 3 2 36 36 H 0.96999 * 119.99859 * 0.02562 * 10 8 6 37 37 H 1.09004 * 109.46869 * 60.00443 * 11 10 8 38 38 H 1.08996 * 109.47355 * 300.00617 * 11 10 8 39 39 H 1.07990 * 118.17623 * 0.83457 * 13 12 11 40 40 H 1.09001 * 109.50879 * 229.39573 * 14 13 12 41 41 H 1.08999 * 109.31560 * 109.34583 * 14 13 12 42 42 H 0.96999 * 119.99300 * 354.42319 * 19 18 16 43 43 H 1.08998 * 109.78305 * 58.08614 * 24 15 14 44 44 H 1.09005 * 109.77426 * 178.83834 * 24 15 14 45 45 H 1.08996 * 109.31191 * 40.72274 * 25 12 11 46 46 H 1.08997 * 109.15964 * 281.19248 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.1852 2.4449 -0.7781 5 6 2.7418 1.9437 1.2638 6 6 3.5550 1.6563 0.0006 7 1 3.9433 2.5109 -0.5534 8 6 4.4307 0.4298 0.0018 9 8 3.9283 -0.6740 0.0026 10 7 5.7722 0.5596 0.0018 11 6 6.6235 -0.6326 0.0024 12 6 8.0717 -0.2158 0.0029 13 6 8.6769 -0.1449 1.1452 14 6 10.1098 0.2675 1.3014 15 7 10.7498 0.3188 -0.0210 16 6 12.0092 -0.1795 -0.2232 17 1 12.3109 -0.5007 -1.2093 18 6 12.8980 -0.2718 0.8389 19 7 12.7734 0.5328 1.8732 20 14 14.2756 -1.5327 0.7973 21 1 15.0837 -1.4243 2.0384 22 1 13.6957 -2.8965 0.7018 23 1 15.1425 -1.2799 -0.3816 24 6 9.9780 0.9229 -1.1210 25 6 8.7101 0.0880 -1.3197 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8898 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.4776 2.4339 -1.8281 32 1 0.1339 2.1707 -0.6909 33 1 1.3351 3.4444 -0.3697 34 1 2.8406 1.2457 2.0950 35 1 2.5949 2.9876 1.5411 36 1 6.1740 1.4425 0.0015 37 1 6.4166 -1.2272 -0.8875 38 1 6.4164 -1.2266 0.8925 39 1 8.1196 -0.4002 2.0342 40 1 10.6300 -0.4551 1.9302 41 1 10.1528 1.2529 1.7654 42 1 12.1126 1.2427 1.8584 43 1 9.7087 1.9472 -0.8636 44 1 10.5718 0.9164 -2.0351 45 1 8.0067 0.6429 -1.9405 46 1 8.9685 -0.8476 -1.8155 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001327009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:46 Heat of formation + Delta-G solvation = 13.631043 kcal Electronic energy + Delta-G solvation = -23326.655642 eV Core-core repulsion = 20024.497952 eV Total energy + Delta-G solvation = -3302.157691 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39719 -38.36296 -37.38850 -35.04740 -33.15031 -32.33680 -30.93589 -29.80559 -28.59852 -27.08780 -24.76382 -23.96938 -23.23760 -22.83243 -21.15193 -20.40247 -19.11375 -17.94234 -17.33254 -16.34450 -15.93322 -15.38808 -14.96527 -14.89632 -14.38467 -14.32047 -14.04390 -13.75912 -13.60993 -13.44030 -13.26204 -13.11793 -12.50170 -12.41040 -12.19736 -12.06731 -12.00410 -11.75450 -11.50648 -11.35390 -11.11492 -10.84512 -10.70866 -10.50648 -10.30584 -10.03393 -10.02867 -10.01465 -9.58056 -9.42205 -8.99550 -8.55657 -8.22691 -6.97474 -6.11032 -3.23690 2.42707 2.47384 3.37202 3.48581 3.52571 3.60063 3.70179 4.36388 4.49552 4.56982 4.59602 4.78403 4.92081 5.03145 5.15446 5.21038 5.24425 5.27974 5.38112 5.44078 5.49427 5.51287 5.54683 5.69793 5.70160 5.74533 5.84744 5.89642 5.93484 6.01015 6.02580 6.15105 6.18236 6.28400 6.37717 6.48841 6.58943 6.62360 6.83084 6.84293 7.10304 7.47755 7.55998 7.91960 8.24621 8.51970 9.04843 9.80112 10.25316 11.18951 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.040740 B = 0.002651 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.125013 B =10560.649981 C =10623.890764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.076 4.076 3 C -0.089 4.089 4 C -0.123 4.123 5 C -0.147 4.147 6 C -0.189 4.189 7 H 0.121 0.879 8 C 0.539 3.461 9 O -0.541 6.541 10 N -0.718 5.718 11 C 0.158 3.842 12 C -0.156 4.156 13 C -0.125 4.125 14 C 0.173 3.827 15 N -0.600 5.600 16 C -0.346 4.346 17 H 0.059 0.941 18 C -0.025 4.025 19 N -0.918 5.918 20 Si 1.064 2.936 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.146 3.854 25 C -0.092 4.092 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.401 0.599 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.035 0.965 42 H 0.268 0.732 43 H 0.021 0.979 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.767 4.030 -3.446 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.113 4.113 3 C -0.090 4.090 4 C -0.180 4.180 5 C -0.184 4.184 6 C -0.210 4.210 7 H 0.139 0.861 8 C 0.325 3.675 9 O -0.419 6.419 10 N -0.369 5.369 11 C 0.035 3.965 12 C -0.157 4.157 13 C -0.146 4.146 14 C 0.048 3.952 15 N -0.325 5.325 16 C -0.475 4.475 17 H 0.077 0.923 18 C -0.227 4.227 19 N -0.558 5.558 20 Si 0.893 3.107 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.020 3.980 25 C -0.131 4.131 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.235 0.765 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.053 0.947 42 H 0.079 0.921 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.804 2.553 -2.585 21.119 hybrid contribution -0.905 1.124 -0.918 1.710 sum -21.709 3.677 -3.503 22.295 Atomic orbital electron populations 1.21939 0.96568 1.01337 1.01386 1.21084 0.94005 0.92353 1.03871 1.21589 0.90368 0.97665 0.99380 1.21520 0.99896 0.97032 0.99578 1.23194 1.01645 1.02501 0.91096 1.22378 0.94031 0.99083 1.05523 0.86104 1.19689 0.82254 0.89661 0.75846 1.90687 1.73769 1.27403 1.50014 1.46150 1.05575 1.10420 1.74737 1.20435 0.87374 0.86775 1.01922 1.20551 0.93552 1.05440 0.96132 1.22926 0.98781 0.96432 0.96439 1.19820 0.87582 0.98768 0.89057 1.44176 1.14453 1.69254 1.04591 1.19949 0.89397 1.39996 0.98159 0.92347 1.25825 1.00232 1.01601 0.95018 1.70812 1.35188 1.15941 1.33891 0.83542 0.75641 0.75809 0.75682 1.21065 1.22061 1.21963 1.20945 0.91163 0.93385 0.92533 1.20771 0.97821 1.00829 0.93634 0.92595 0.92899 0.92988 0.90795 0.90993 0.92066 0.90875 0.92410 0.88328 0.87918 0.76464 0.91502 0.91641 0.88471 0.89737 0.94742 0.92092 0.96109 0.92235 0.92643 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 8.92 37.16 0.33 -0.95 16 2 C -0.08 -0.81 4.36 -26.73 -0.12 -0.92 16 3 C -0.09 -0.83 2.47 -154.50 -0.38 -1.21 16 4 C -0.12 -0.88 9.49 37.16 0.35 -0.53 16 5 C -0.15 -1.30 9.52 -26.75 -0.25 -1.55 16 6 C -0.19 -1.89 5.91 -91.79 -0.54 -2.43 16 7 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 8 C 0.54 7.10 7.59 -10.98 -0.08 7.02 16 9 O -0.54 -8.72 13.10 5.56 0.07 -8.64 16 10 N -0.72 -9.19 5.55 -61.47 -0.34 -9.54 16 11 C 0.16 2.33 5.66 -5.19 -0.03 2.30 16 12 C -0.16 -2.62 5.22 -100.99 -0.53 -3.15 16 13 C -0.13 -2.32 9.45 -35.97 -0.34 -2.66 16 14 C 0.17 3.97 4.87 -5.29 -0.03 3.94 16 15 N -0.60 -14.86 2.89 -173.90 -0.50 -15.36 16 16 C -0.35 -9.60 9.58 -15.06 -0.14 -9.74 16 17 H 0.06 1.62 7.95 -52.48 -0.42 1.21 16 18 C -0.03 -0.71 4.73 -17.43 -0.08 -0.79 16 19 N -0.92 -27.16 12.56 55.49 0.70 -26.46 16 20 Si 1.06 25.12 29.99 -169.99 -5.10 20.02 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.15 2.99 6.58 -3.53 -0.02 2.96 16 25 C -0.09 -1.58 5.95 -28.18 -0.17 -1.74 16 26 H 0.06 0.41 6.45 -51.93 -0.33 0.07 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.39 8.14 -51.94 -0.42 -0.03 16 29 H 0.07 0.93 7.26 -51.93 -0.38 0.55 16 30 H 0.07 0.89 7.01 -51.93 -0.36 0.53 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.47 5.59 -51.93 -0.29 0.18 16 33 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 34 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 35 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.40 4.53 8.46 -40.82 -0.35 4.18 16 37 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 38 H 0.07 1.01 7.78 -51.93 -0.40 0.60 16 39 H 0.10 1.62 7.73 -52.49 -0.41 1.21 16 40 H 0.08 2.17 6.78 -51.93 -0.35 1.82 16 41 H 0.04 0.82 7.40 -51.93 -0.38 0.43 16 42 H 0.27 7.92 6.38 -40.82 -0.26 7.66 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -31.08 361.57 -9.53 -40.61 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.77 Total: 3.39 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -2.03 Total: -9.47 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.15 Total: -51.35 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.07 Total: -8.64 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.10 Total: 20.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.08 -9.53 -40.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001327009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.243 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds