Wall clock time and date at job start Tue Mar 31 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.47098 * 120.00192 * 2 1 4 4 O 1.21615 * 120.00219 * 180.02562 * 3 2 1 5 5 N 1.34781 * 119.99814 * 359.71995 * 3 2 1 6 6 C 1.46503 * 119.99817 * 180.27434 * 5 3 2 7 7 H 1.08993 * 109.49764 * 34.94148 * 6 5 3 8 8 C 1.53042 * 109.49303 * 155.00356 * 6 5 3 9 9 C 1.53039 * 109.53578 * 181.31610 * 8 6 5 10 10 C 1.53195 * 109.31439 * 298.63722 * 9 8 6 11 11 N 1.46920 * 108.77502 * 54.63393 * 10 9 8 12 12 C 1.36940 * 120.63011 * 126.37443 * 11 10 9 13 13 H 1.07996 * 119.99956 * 332.60802 * 12 11 10 14 14 C 1.38812 * 120.00126 * 152.61668 * 12 11 10 15 15 N 1.31620 * 120.00203 * 159.37029 * 14 12 11 16 16 Si 1.86803 * 119.99979 * 339.36691 * 14 12 11 17 17 H 1.48503 * 109.46976 * 92.94069 * 16 14 12 18 18 H 1.48495 * 109.47347 * 212.94087 * 16 14 12 19 19 H 1.48500 * 109.46851 * 332.94253 * 16 14 12 20 20 C 1.46933 * 118.73926 * 306.39180 * 11 10 9 21 21 C 1.33000 * 120.00123 * 179.97438 * 2 1 3 22 22 C 1.51450 * 126.34246 * 179.68833 * 21 2 1 23 23 C 1.54273 * 106.85082 * 180.24345 * 22 21 2 24 24 C 1.54983 * 103.66278 * 23.48468 * 23 22 21 25 25 C 1.51840 * 126.34080 * 0.02562 * 21 2 1 26 26 H 1.09001 * 109.47316 * 90.00453 * 1 2 3 27 27 H 1.09002 * 109.47420 * 209.99970 * 1 2 3 28 28 H 1.09003 * 109.47406 * 330.00075 * 1 2 3 29 29 H 0.96997 * 119.99595 * 0.28065 * 5 3 2 30 30 H 1.08994 * 109.46056 * 301.33687 * 8 6 5 31 31 H 1.09002 * 109.45842 * 61.29645 * 8 6 5 32 32 H 1.09003 * 109.50046 * 58.58622 * 9 8 6 33 33 H 1.09001 * 109.50016 * 178.64893 * 9 8 6 34 34 H 1.09001 * 109.58857 * 174.42601 * 10 9 8 35 35 H 1.08998 * 109.58422 * 294.70212 * 10 9 8 36 36 H 0.96992 * 119.99812 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.58380 * 293.81998 * 20 11 10 38 38 H 1.08995 * 109.58329 * 173.39860 * 20 11 10 39 39 H 1.08999 * 109.98107 * 299.72896 * 22 21 2 40 40 H 1.09000 * 109.98092 * 61.03040 * 22 21 2 41 41 H 1.08998 * 110.79336 * 264.85928 * 23 22 21 42 42 H 1.09000 * 110.55438 * 141.98896 * 23 22 21 43 43 H 1.09002 * 110.83542 * 204.49327 * 24 23 22 44 44 H 1.08998 * 111.00722 * 80.98564 * 24 23 22 45 45 H 1.09000 * 110.44076 * 274.92700 * 25 21 2 46 46 H 1.09008 * 110.44439 * 37.45068 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4586 1.2739 -0.0005 5 7 1.5686 2.4411 -0.0057 6 6 2.3011 3.7098 -0.0118 7 1 3.2125 3.6009 -0.5996 8 6 1.4242 4.8029 -0.6268 9 6 2.2004 6.1214 -0.6637 10 6 2.5604 6.5376 0.7660 11 7 3.2794 5.4319 1.4135 12 6 4.5018 5.6401 1.9947 13 1 5.1436 6.4303 1.6341 14 6 4.9160 4.8353 3.0471 15 7 6.1957 4.7429 3.3409 16 14 3.6572 3.8834 4.0466 17 1 3.4993 2.5216 3.4758 18 1 4.1187 3.7797 5.4542 19 1 2.3530 4.5923 4.0041 20 6 2.6622 4.0986 1.4253 21 6 2.1720 -1.1518 0.0005 22 6 3.6772 -1.3191 -0.0060 23 6 3.9585 -2.8359 -0.0088 24 6 2.6647 -3.4472 -0.6041 25 6 1.5627 -2.5426 0.0006 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 0.5986 2.4411 -0.0057 30 1 1.1455 4.5171 -1.6410 31 1 0.5242 4.9281 -0.0247 32 1 3.1131 5.9902 -1.2450 33 1 1.5840 6.8938 -1.1236 34 1 3.1971 7.4219 0.7399 35 1 1.6497 6.7594 1.3223 36 1 6.4850 4.1809 4.0765 37 1 1.7597 4.1192 2.0361 38 1 3.3661 3.3738 1.8341 39 1 4.0993 -0.8582 -0.8991 40 1 4.1064 -0.8643 0.8867 41 1 4.1232 -3.2008 1.0050 42 1 4.8163 -3.0649 -0.6412 43 1 2.5393 -4.4804 -0.2802 44 1 2.6661 -3.3812 -1.6921 45 1 1.3292 -2.8558 1.0182 46 1 0.6674 -2.5661 -0.6209 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007060574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:09 Heat of formation + Delta-G solvation = -16.567281 kcal Electronic energy + Delta-G solvation = -24480.918930 eV Core-core repulsion = 21177.451742 eV Total energy + Delta-G solvation = -3303.467188 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.90324 -38.28774 -37.21144 -34.29719 -33.48534 -32.55775 -30.65672 -29.19520 -28.98142 -27.52475 -25.24844 -24.55199 -22.75003 -21.91508 -20.77535 -20.35008 -19.64468 -18.11956 -16.78627 -16.40723 -15.92864 -15.69409 -15.35674 -14.57796 -14.46312 -14.09340 -13.76222 -13.53266 -13.42757 -13.23978 -12.89429 -12.73268 -12.64395 -12.41138 -12.30018 -12.14451 -11.91770 -11.54247 -11.28816 -11.16265 -11.04633 -11.01510 -10.70871 -10.70725 -10.57283 -10.20270 -10.10943 -9.71123 -9.45597 -9.28374 -8.87928 -8.68799 -8.40514 -6.91675 -5.88651 -3.24576 1.48769 3.41995 3.47594 3.52088 3.54933 3.57187 4.35908 4.55344 4.60809 4.87494 4.89801 5.00376 5.09560 5.13525 5.24417 5.30628 5.34321 5.44028 5.48479 5.52846 5.54283 5.58410 5.65110 5.67079 5.73982 5.87555 5.90374 5.96765 6.00552 6.07959 6.19150 6.24815 6.26090 6.29753 6.47841 6.49558 6.59010 6.65813 6.67383 6.74141 6.87725 7.01361 7.88492 8.02559 8.39280 8.63023 8.99660 9.78726 10.14886 11.27257 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.005085 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.802997 B = 5504.644569 C = 6490.056279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.189 4.189 3 C 0.547 3.453 4 O -0.529 6.529 5 N -0.724 5.724 6 C 0.127 3.873 7 H 0.091 0.909 8 C -0.116 4.116 9 C -0.132 4.132 10 C 0.145 3.855 11 N -0.602 5.602 12 C -0.263 4.263 13 H 0.087 0.913 14 C 0.029 3.971 15 N -0.905 5.905 16 Si 0.880 3.120 17 H -0.287 1.287 18 H -0.303 1.303 19 H -0.272 1.272 20 C 0.121 3.879 21 C -0.040 4.040 22 C -0.093 4.093 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.098 4.098 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.393 0.607 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.022 0.978 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.253 -12.490 -9.447 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.193 4.193 3 C 0.336 3.664 4 O -0.406 6.406 5 N -0.376 5.376 6 C 0.021 3.979 7 H 0.109 0.891 8 C -0.154 4.154 9 C -0.172 4.172 10 C 0.020 3.980 11 N -0.326 5.326 12 C -0.392 4.392 13 H 0.104 0.896 14 C -0.170 4.170 15 N -0.547 5.547 16 Si 0.710 3.290 17 H -0.214 1.214 18 H -0.232 1.232 19 H -0.197 1.197 20 C -0.006 4.006 21 C -0.042 4.042 22 C -0.130 4.130 23 C -0.166 4.166 24 C -0.160 4.160 25 C -0.135 4.135 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.227 0.773 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.210 -12.503 -9.324 20.439 hybrid contribution -1.163 -0.564 0.711 1.476 sum -14.373 -13.067 -8.613 21.249 Atomic orbital electron populations 1.20684 0.91029 1.02714 1.02074 1.20823 0.95876 0.92204 1.10351 1.18275 0.87442 0.83885 0.76839 1.90835 1.13331 1.87424 1.49018 1.46056 1.09819 1.06013 1.75688 1.21717 0.95357 0.81015 0.99815 0.89121 1.21678 0.98371 0.95581 0.99791 1.21999 0.99799 0.95553 0.99843 1.20973 0.95270 0.91367 0.90434 1.44292 1.20448 1.02152 1.65669 1.18896 0.90885 1.18354 1.11016 0.89576 1.25239 0.95693 0.98444 0.97654 1.69833 1.13406 1.40618 1.30861 0.86973 0.82678 0.79906 0.79413 1.21444 1.23164 1.19747 1.21683 0.96938 0.88603 0.93349 1.22695 0.96590 0.93402 0.91532 1.21280 0.92127 0.95277 1.04274 1.22467 0.97581 0.95502 1.01094 1.22509 0.94709 0.98473 1.00351 1.21549 0.98448 0.91736 1.01718 0.91308 0.91406 0.91739 0.77292 0.92508 0.92208 0.91660 0.92194 0.91689 0.95967 0.92796 0.95984 0.90317 0.89548 0.89499 0.91452 0.91295 0.91236 0.91235 0.89721 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.15 36.00 0.33 -0.72 16 2 C -0.19 -2.63 6.00 -102.85 -0.62 -3.24 16 3 C 0.55 9.84 7.72 -12.66 -0.10 9.74 16 4 O -0.53 -11.79 13.77 5.26 0.07 -11.72 16 5 N -0.72 -11.80 5.03 -54.87 -0.28 -12.08 16 6 C 0.13 2.42 2.61 -67.81 -0.18 2.24 16 7 H 0.09 2.00 7.57 -51.93 -0.39 1.60 16 8 C -0.12 -1.77 5.35 -26.69 -0.14 -1.91 16 9 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 10 C 0.15 2.88 6.52 -3.71 -0.02 2.86 16 11 N -0.60 -14.93 2.77 -172.32 -0.48 -15.41 16 12 C -0.26 -7.71 10.03 -15.06 -0.15 -7.86 16 13 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 14 C 0.03 0.89 5.23 -17.43 -0.09 0.79 16 15 N -0.90 -29.04 13.97 55.49 0.78 -28.27 16 16 Si 0.88 23.90 24.35 -169.99 -4.14 19.76 16 17 H -0.29 -7.87 6.62 56.52 0.37 -7.49 16 18 H -0.30 -8.25 7.11 56.52 0.40 -7.85 16 19 H -0.27 -7.16 6.63 56.52 0.38 -6.79 16 20 C 0.12 2.83 3.78 -3.71 -0.01 2.82 16 21 C -0.04 -0.53 6.12 -100.23 -0.61 -1.14 16 22 C -0.09 -1.32 4.81 -26.85 -0.13 -1.45 16 23 C -0.13 -1.37 6.88 -25.02 -0.17 -1.54 16 24 C -0.12 -1.07 6.94 -24.70 -0.17 -1.25 16 25 C -0.10 -0.92 5.66 -26.33 -0.15 -1.07 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.56 7.22 -51.93 -0.37 0.19 16 28 H 0.06 0.59 6.71 -51.93 -0.35 0.24 16 29 H 0.39 4.96 6.71 -40.82 -0.27 4.68 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.28 7.93 -51.93 -0.41 0.86 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 37 H 0.02 0.51 7.08 -51.93 -0.37 0.14 16 38 H 0.08 2.15 4.50 -51.93 -0.23 1.91 16 39 H 0.09 1.35 7.67 -51.93 -0.40 0.95 16 40 H 0.09 1.47 7.68 -51.93 -0.40 1.08 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 0.60 7.69 -51.92 -0.40 0.20 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -34.81 349.80 -9.02 -43.83 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.86 Total: 2.65 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.38 Total: -4.03 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.02 Total: -55.75 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -4.14 Total: 19.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.81 -9.02 -43.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007060574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.261 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds