Wall clock time and date at job start Tue Mar 31 2020 08:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32995 * 120.00223 * 2 1 4 4 C 1.50699 * 119.99895 * 180.02562 * 3 2 1 5 5 C 1.47096 * 119.99862 * 0.02562 * 3 2 1 6 6 O 1.21611 * 120.00108 * 322.49253 * 5 3 2 7 7 N 1.34780 * 119.99696 * 142.49186 * 5 3 2 8 8 C 1.47060 * 120.84683 * 3.13178 * 7 5 3 9 9 C 1.53127 * 109.04656 * 126.56106 * 8 7 5 10 10 C 1.53145 * 109.62213 * 53.99145 * 9 8 7 11 11 C 1.52814 * 109.26412 * 299.15601 * 10 9 8 12 12 H 1.09004 * 109.47341 * 301.99825 * 11 10 9 13 13 C 1.53059 * 110.34333 * 181.45723 * 11 10 9 14 14 N 1.47062 * 108.33974 * 184.56455 * 13 11 10 15 15 C 1.36942 * 120.46974 * 233.29376 * 14 13 11 16 16 H 1.08004 * 119.99673 * 146.77006 * 15 14 13 17 17 C 1.38815 * 120.00236 * 326.76873 * 15 14 13 18 18 N 1.31625 * 119.99716 * 347.96065 * 17 15 14 19 19 Si 1.86791 * 120.00039 * 167.96244 * 17 15 14 20 20 H 1.48503 * 109.47013 * 270.00063 * 19 17 15 21 21 H 1.48505 * 109.47241 * 29.99781 * 19 17 15 22 22 H 1.48502 * 109.47178 * 150.00051 * 19 17 15 23 23 C 1.46860 * 119.06024 * 53.57139 * 14 13 11 24 24 C 1.53738 * 108.87081 * 307.04130 * 23 14 13 25 25 C 1.46720 * 120.84089 * 183.10994 * 7 5 3 26 26 H 1.09003 * 109.52281 * 114.81499 * 25 7 5 27 27 H 1.08994 * 109.47257 * 59.99220 * 1 2 3 28 28 H 1.08991 * 109.47148 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46526 * 299.99817 * 1 2 3 30 30 H 1.07999 * 119.99593 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47058 * 279.44627 * 4 3 2 32 32 H 1.09002 * 109.47128 * 39.44545 * 4 3 2 33 33 H 1.08996 * 109.47089 * 159.44999 * 4 3 2 34 34 H 1.08997 * 109.54325 * 6.69037 * 8 7 5 35 35 H 1.09001 * 109.61216 * 246.47583 * 8 7 5 36 36 H 1.08994 * 109.44648 * 293.94299 * 9 8 7 37 37 H 1.09006 * 109.42298 * 174.02229 * 9 8 7 38 38 H 1.09000 * 109.50554 * 179.21325 * 10 9 8 39 39 H 1.08998 * 109.50303 * 59.09198 * 10 9 8 40 40 H 1.09007 * 109.68884 * 64.85101 * 13 11 10 41 41 H 1.08997 * 109.72435 * 304.29841 * 13 11 10 42 42 H 0.96998 * 119.99603 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.52944 * 66.97963 * 23 14 13 44 44 H 1.09001 * 109.53428 * 187.20388 * 23 14 13 45 45 H 1.08997 * 109.69331 * 294.45444 * 24 23 14 46 46 H 1.08996 * 109.57843 * 174.13970 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 3.6791 1.1517 -0.0006 5 6 1.4366 2.4256 0.0006 6 8 0.4088 2.5347 -0.6402 7 7 1.9019 3.4720 0.7113 8 6 3.1776 3.3828 1.4375 9 6 4.0735 4.5520 1.0192 10 6 3.3225 5.8719 1.2173 11 6 2.0688 5.8747 0.3435 12 1 2.3527 5.7354 -0.6997 13 6 1.3174 7.1994 0.4952 14 7 0.0674 7.1132 -0.2747 15 6 -0.2431 8.0697 -1.2043 16 1 -0.7916 7.7995 -2.0946 17 6 0.1472 9.3864 -1.0023 18 7 0.6004 9.7654 0.1739 19 14 0.0293 10.6203 -2.3997 20 1 1.3006 10.6221 -3.1671 21 1 -1.0911 10.2442 -3.2989 22 1 -0.2155 11.9756 -1.8440 23 6 -0.8462 5.9901 -0.0282 24 6 -0.0614 4.6740 -0.1532 25 6 1.1487 4.7292 0.7799 26 1 0.8158 4.8991 1.8038 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 2.0470 -0.9353 -0.0004 31 1 4.0428 0.9827 1.0130 32 1 4.0421 0.3582 -0.6538 33 1 4.0423 2.1139 -0.3612 34 1 3.6701 2.4412 1.1949 35 1 2.9920 3.4313 2.5105 36 1 4.3455 4.4433 -0.0306 37 1 4.9766 4.5532 1.6298 38 1 3.9668 6.7036 0.9322 39 1 3.0367 5.9744 2.2641 40 1 1.9299 8.0152 0.1109 41 1 1.0898 7.3750 1.5465 42 1 0.8727 10.6856 0.3151 43 1 -1.2648 6.0743 0.9747 44 1 -1.6512 6.0070 -0.7629 45 1 0.2763 4.5439 -1.1813 46 1 -0.7020 3.8385 0.1290 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021552776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:39 Heat of formation + Delta-G solvation = 24.141721 kcal Electronic energy + Delta-G solvation = -25315.569634 eV Core-core repulsion = 22013.867721 eV Total energy + Delta-G solvation = -3301.701913 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.59700 -37.89593 -36.00889 -35.09620 -32.82993 -32.50388 -30.65272 -29.72657 -29.09178 -25.94102 -25.26913 -24.26332 -22.71448 -22.38973 -21.41481 -19.79127 -19.32745 -17.95866 -16.64711 -15.93733 -15.64360 -15.35611 -14.80339 -14.52945 -14.21006 -14.02581 -13.81696 -13.67999 -13.32752 -13.08672 -12.93856 -12.66594 -12.34462 -12.29668 -12.13365 -11.88073 -11.79260 -11.53524 -11.35027 -10.92417 -10.81753 -10.78011 -10.61612 -10.50459 -10.18682 -9.97250 -9.91171 -9.71275 -9.37817 -8.99546 -8.68005 -8.38646 -8.11800 -6.49090 -5.72928 -3.21033 1.50050 3.21801 3.32353 3.41152 3.47281 3.49406 4.53846 4.56444 4.73700 4.89620 5.09500 5.11629 5.21172 5.25168 5.30455 5.43526 5.46398 5.52337 5.58738 5.67231 5.73621 5.75191 5.78705 5.81702 5.96666 5.99143 6.05717 6.22039 6.30281 6.38686 6.44308 6.46940 6.49695 6.53808 6.64003 6.72693 6.87442 7.02754 7.11562 7.28703 7.40304 7.68576 7.77426 7.86935 8.50122 8.56077 9.29043 9.90645 10.50347 11.35000 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.023290 B = 0.004699 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.943017 B = 5956.697226 C = 6655.321519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 C -0.188 4.188 4 C -0.116 4.116 5 C 0.550 3.450 6 O -0.528 6.528 7 N -0.599 5.599 8 C 0.071 3.929 9 C -0.132 4.132 10 C -0.112 4.112 11 C -0.120 4.120 12 H 0.065 0.935 13 C 0.186 3.814 14 N -0.593 5.593 15 C -0.251 4.251 16 H 0.062 0.938 17 C 0.005 3.995 18 N -0.905 5.905 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.278 1.278 22 H -0.291 1.291 23 C 0.138 3.862 24 C -0.114 4.114 25 C 0.157 3.843 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.019 0.981 42 H 0.253 0.747 43 H 0.013 0.987 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.006 -17.881 4.080 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.108 4.108 3 C -0.191 4.191 4 C -0.172 4.172 5 C 0.339 3.661 6 O -0.406 6.406 7 N -0.331 5.331 8 C -0.051 4.051 9 C -0.171 4.171 10 C -0.150 4.150 11 C -0.141 4.141 12 H 0.084 0.916 13 C 0.059 3.941 14 N -0.315 5.315 15 C -0.381 4.381 16 H 0.080 0.920 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.732 3.268 20 H -0.215 1.215 21 H -0.204 1.204 22 H -0.217 1.217 23 C 0.011 3.989 24 C -0.153 4.153 25 C 0.055 3.945 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.031 0.969 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.478 -17.621 3.791 19.514 hybrid contribution 0.217 0.813 -0.505 0.981 sum 7.695 -16.809 3.286 18.776 Atomic orbital electron populations 1.21017 0.92158 1.01619 1.04112 1.23388 0.96923 0.96393 0.94060 1.21600 0.96275 0.93845 1.07392 1.20993 0.91386 1.03116 1.01754 1.18414 0.84794 0.83495 0.79357 1.90826 1.24343 1.82981 1.42470 1.48232 1.22131 1.13613 1.49104 1.22596 0.84806 1.01475 0.96272 1.21900 0.97944 0.95550 1.01668 1.21484 0.97125 0.96261 1.00158 1.22261 0.94543 0.98266 0.99067 0.91643 1.20693 0.87027 0.91917 0.94423 1.44050 1.17308 1.25260 1.44912 1.19194 1.34031 0.86926 0.97955 0.91994 1.25185 1.01185 0.96861 0.96083 1.69994 1.47631 1.16719 1.20578 0.86292 0.77966 0.80741 0.81785 1.21478 1.20382 1.21730 1.21243 0.92647 0.87332 0.97644 1.22532 0.95588 0.97892 0.99325 1.21327 0.92355 0.81506 0.99338 0.91960 0.89036 0.92604 0.91558 0.86224 0.90515 0.91470 0.90778 0.87074 0.92082 0.91887 0.91315 0.91701 0.92189 0.89828 0.96310 0.93715 0.96919 0.92708 0.91473 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.70 36.01 0.31 -1.18 16 2 C -0.09 -0.92 9.98 -36.12 -0.36 -1.28 16 3 C -0.19 -2.23 5.57 -102.85 -0.57 -2.80 16 4 C -0.12 -1.00 7.93 36.00 0.29 -0.71 16 5 C 0.55 8.67 6.89 -12.67 -0.09 8.58 16 6 O -0.53 -9.86 10.00 5.27 0.05 -9.81 16 7 N -0.60 -9.23 2.97 -166.70 -0.50 -9.73 16 8 C 0.07 0.83 5.59 -3.67 -0.02 0.81 16 9 C -0.13 -1.60 5.97 -26.59 -0.16 -1.76 16 10 C -0.11 -1.73 5.24 -26.75 -0.14 -1.87 16 11 C -0.12 -2.33 2.21 -90.55 -0.20 -2.53 16 12 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 13 C 0.19 4.47 4.56 -3.70 -0.02 4.45 16 14 N -0.59 -15.49 2.97 -172.00 -0.51 -16.00 16 15 C -0.25 -7.14 9.53 -15.06 -0.14 -7.28 16 16 H 0.06 1.76 7.86 -52.48 -0.41 1.35 16 17 C 0.01 0.16 5.00 -17.43 -0.09 0.07 16 18 N -0.90 -26.55 11.28 55.49 0.63 -25.93 16 19 Si 0.90 22.17 29.57 -169.99 -5.03 17.15 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 C 0.14 3.17 6.53 -3.46 -0.02 3.15 16 24 C -0.11 -2.34 3.81 -26.40 -0.10 -2.44 16 25 C 0.16 2.88 2.64 -67.72 -0.18 2.71 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.09 1.24 6.74 -51.93 -0.35 0.89 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.08 0.51 6.99 -51.93 -0.36 0.15 16 32 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 33 H 0.07 0.70 6.60 -51.93 -0.34 0.35 16 34 H 0.11 1.04 2.48 -58.00 -0.14 0.90 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.08 2.24 6.32 -51.93 -0.33 1.91 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.05 1.26 7.93 -51.93 -0.41 0.85 16 45 H 0.07 1.52 7.22 -51.93 -0.37 1.15 16 46 H 0.07 1.49 6.37 -51.93 -0.33 1.16 16 LS Contribution 340.68 15.07 5.13 5.13 Total: -1.00 -31.51 340.68 -9.39 -40.90 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.68 Total: 0.38 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.49 Total: -2.09 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.38 Total: -51.65 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.05 Total: -9.81 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.51 -9.39 -40.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021552776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.037 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds