Wall clock time and date at job start Tue Mar 31 2020 07:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46712 * 2 1 4 4 C 1.52999 * 109.47189 * 119.99709 * 2 1 3 5 5 C 1.53002 * 115.55138 * 34.33105 * 4 2 1 6 6 C 1.53074 * 117.51319 * 248.61196 * 4 2 1 7 7 C 1.53003 * 117.49724 * 180.02562 * 4 2 1 8 8 H 1.08997 * 117.49817 * 0.02562 * 7 4 2 9 9 C 1.50699 * 117.49710 * 215.00405 * 7 4 2 10 10 O 1.21285 * 119.99997 * 0.08585 * 9 7 4 11 11 N 1.34775 * 119.99742 * 180.09125 * 9 7 4 12 12 C 1.46503 * 119.99929 * 180.02562 * 11 9 7 13 13 H 1.09006 * 115.51564 * 350.40525 * 12 11 9 14 14 C 1.53001 * 117.44112 * 204.99861 * 12 11 9 15 15 H 1.09002 * 119.53987 * 4.11354 * 14 12 11 16 16 C 1.54391 * 118.12276 * 159.20929 * 14 12 11 17 17 N 1.51826 * 102.86597 * 88.01620 * 16 14 12 18 18 C 1.36943 * 127.61033 * 140.54207 * 17 16 14 19 19 H 1.07994 * 119.99697 * 179.66525 * 18 17 16 20 20 C 1.38808 * 119.99940 * 359.67089 * 18 17 16 21 21 N 1.31624 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00176 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47550 * 89.99681 * 22 20 18 24 24 H 1.48501 * 109.47411 * 209.99883 * 22 20 18 25 25 H 1.48504 * 109.46856 * 329.99412 * 22 20 18 26 26 C 1.48144 * 104.55308 * 320.27435 * 17 16 14 27 27 C 1.52992 * 117.44579 * 135.75651 * 12 11 9 28 28 H 1.09007 * 119.54057 * 355.88031 * 27 12 11 29 29 H 1.08999 * 109.47784 * 300.00078 * 1 2 3 30 30 H 1.09001 * 109.47582 * 60.00072 * 1 2 3 31 31 H 1.09003 * 109.47466 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47376 * 240.00272 * 2 1 3 33 33 H 1.08998 * 109.46978 * 60.00028 * 3 2 1 34 34 H 1.08998 * 109.46557 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46954 * 299.99781 * 3 2 1 36 36 H 1.08994 * 109.47071 * 205.66982 * 5 4 2 37 37 H 1.08999 * 109.47203 * 325.67235 * 5 4 2 38 38 H 1.08996 * 109.46799 * 85.66702 * 5 4 2 39 39 H 1.08995 * 117.51249 * 145.04773 * 6 4 2 40 40 H 1.08996 * 117.49616 * 0.02562 * 6 4 2 41 41 H 0.96998 * 120.00482 * 359.97438 * 11 9 7 42 42 H 1.08992 * 110.40800 * 207.99366 * 16 14 12 43 43 H 1.08999 * 110.40393 * 330.42441 * 16 14 12 44 44 H 0.96995 * 119.99945 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.40706 * 281.07236 * 26 17 16 46 46 H 1.09001 * 110.41178 * 158.64223 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.1852 -1.8964 1.7280 6 6 2.7425 0.1228 2.3157 7 6 3.5550 -0.8274 1.4346 8 1 4.1883 -0.3832 0.6667 9 6 4.0914 -2.0821 2.0742 10 8 3.3295 -2.9605 2.4189 11 7 5.4178 -2.2279 2.2634 12 6 5.9394 -3.4478 2.8848 13 1 5.1902 -4.1143 3.3121 14 6 7.2890 -3.3535 3.5994 15 1 7.7850 -2.3867 3.6858 16 6 7.6325 -4.4306 4.6509 17 7 8.2795 -5.5224 3.8175 18 6 9.3623 -6.2936 4.1460 19 1 9.7193 -7.0446 3.4569 20 6 10.0010 -6.1101 5.3647 21 7 9.5661 -5.1945 6.2043 22 14 11.4777 -7.1626 5.8131 23 1 12.7200 -6.4981 5.3439 24 1 11.5344 -7.3337 7.2871 25 1 11.3526 -8.4928 5.1649 26 6 7.4734 -5.5697 2.5754 27 6 7.1736 -4.0908 2.2490 28 1 7.5837 -3.6732 1.3294 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1298 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8901 36 1 1.3352 -2.0428 2.7976 37 1 0.1339 -1.6838 1.5341 38 1 1.4777 -2.7999 1.1931 39 1 2.5958 -0.1592 3.3583 40 1 2.8407 1.1918 2.1272 41 1 6.0273 -1.5255 1.9875 42 1 8.3119 -4.0263 5.4011 43 1 6.7238 -4.8050 5.1222 44 1 10.0127 -5.0661 7.0557 45 1 6.5461 -6.1171 2.7447 46 1 8.0449 -6.0286 1.7686 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026133028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:16 Heat of formation + Delta-G solvation = 46.385200 kcal Electronic energy + Delta-G solvation = -23380.254634 eV Core-core repulsion = 20079.517270 eV Total energy + Delta-G solvation = -3300.737364 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = -0.85 seconds Orbital eigenvalues (eV) -40.48988 -38.88627 -37.56658 -34.33931 -33.33603 -32.55572 -30.21512 -29.38335 -27.04414 -26.66623 -25.79012 -24.21913 -23.22991 -21.51042 -20.45810 -19.87619 -19.16487 -18.44832 -17.18164 -16.91484 -16.20685 -15.74896 -14.89548 -14.68346 -14.51486 -14.31062 -13.62017 -13.49777 -13.22105 -13.17238 -12.85373 -12.71492 -12.61458 -12.18366 -11.90925 -11.84496 -11.65470 -11.46587 -11.33721 -11.22068 -11.09378 -10.90566 -10.84385 -10.33172 -10.24591 -10.17309 -10.00756 -9.89521 -9.67683 -9.42615 -9.14582 -8.80694 -8.28593 -6.91937 -5.66180 -3.10237 2.54262 3.13099 3.39733 3.44368 3.46568 3.62828 4.35853 4.39299 4.45306 4.47621 4.61716 4.68947 4.84173 4.97525 5.06287 5.21523 5.31441 5.33414 5.37692 5.43692 5.45688 5.58221 5.58973 5.59944 5.70896 5.74663 5.82400 5.82911 5.91150 5.92727 5.95865 6.06763 6.12513 6.21101 6.29075 6.50224 6.56883 6.68861 6.87969 6.90700 7.33078 7.54537 7.66482 7.79808 8.27765 8.38056 9.12534 9.76651 10.48101 11.37261 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.047905 B = 0.002601 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.350315 B =10763.649463 C =10841.764884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.152 4.152 4 C -0.083 4.083 5 C -0.109 4.109 6 C -0.151 4.151 7 C -0.187 4.187 8 H 0.119 0.881 9 C 0.543 3.457 10 O -0.535 6.535 11 N -0.695 5.695 12 C 0.094 3.906 13 H 0.129 0.871 14 C -0.172 4.172 15 H 0.101 0.899 16 C 0.156 3.844 17 N -0.601 5.601 18 C -0.214 4.214 19 H 0.080 0.920 20 C -0.015 4.015 21 N -0.923 5.923 22 Si 0.918 3.082 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.161 3.839 27 C -0.186 4.186 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.398 0.602 42 H 0.137 0.863 43 H 0.017 0.983 44 H 0.253 0.747 45 H 0.027 0.973 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.980 14.279 -11.704 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C -0.209 4.209 4 C -0.084 4.084 5 C -0.166 4.166 6 C -0.189 4.189 7 C -0.208 4.208 8 H 0.137 0.863 9 C 0.330 3.670 10 O -0.411 6.411 11 N -0.343 5.343 12 C -0.012 4.012 13 H 0.147 0.853 14 C -0.193 4.193 15 H 0.119 0.881 16 C 0.032 3.968 17 N -0.325 5.325 18 C -0.342 4.342 19 H 0.098 0.902 20 C -0.210 4.210 21 N -0.572 5.572 22 Si 0.749 3.251 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.034 3.966 27 C -0.208 4.208 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.232 0.768 42 H 0.154 0.846 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.327 13.539 -11.258 23.344 hybrid contribution 1.371 0.003 -0.084 1.374 sum -13.956 13.542 -11.342 22.512 Atomic orbital electron populations 1.21895 0.94672 1.02190 1.01589 1.20620 0.96017 0.95315 0.95976 1.21995 1.01033 0.95952 1.01905 1.21605 0.90708 0.99054 0.97033 1.21473 0.97274 0.95726 1.02124 1.23324 1.01693 0.97134 0.96719 1.22344 0.96089 0.97982 1.04390 0.86275 1.19629 0.81951 0.87252 0.78170 1.90699 1.56648 1.42907 1.50883 1.45387 1.07076 1.19989 1.61828 1.21905 0.91047 0.88252 1.00027 0.85310 1.24630 0.96733 1.01098 0.96813 0.88129 1.22553 0.96658 0.85286 0.92322 1.46135 1.31807 1.40435 1.14166 1.19118 1.02818 1.11607 1.00633 0.90247 1.24762 0.99967 0.99659 0.96624 1.69486 1.42105 1.35657 1.09983 0.86006 0.82184 0.79484 0.77440 1.21649 1.21618 1.20735 1.21073 0.94437 0.90904 0.90223 1.24382 1.01165 0.98213 0.97023 0.88101 0.92454 0.92810 0.91889 0.90766 0.92095 0.92574 0.92593 0.91692 0.92644 0.91427 0.88336 0.87414 0.76841 0.84634 0.96461 0.93583 0.95577 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.20 37.15 0.30 -0.70 16 2 C -0.06 -0.47 3.15 -90.62 -0.29 -0.75 16 3 C -0.15 -0.96 7.79 37.16 0.29 -0.67 16 4 C -0.08 -0.81 2.47 -154.47 -0.38 -1.19 16 5 C -0.11 -1.24 7.73 37.16 0.29 -0.96 16 6 C -0.15 -1.39 8.92 -26.71 -0.24 -1.63 16 7 C -0.19 -1.94 5.55 -91.79 -0.51 -2.45 16 8 H 0.12 1.01 7.60 -51.93 -0.39 0.61 16 9 C 0.54 7.74 7.59 -10.99 -0.08 7.66 16 10 O -0.53 -9.41 12.67 5.55 0.07 -9.34 16 11 N -0.69 -9.73 5.56 -53.81 -0.30 -10.03 16 12 C 0.09 1.63 5.96 -67.93 -0.41 1.23 16 13 H 0.13 2.53 7.40 -51.93 -0.38 2.15 16 14 C -0.17 -3.36 6.96 -89.22 -0.62 -3.98 16 15 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 16 C 0.16 3.82 6.43 -0.29 0.00 3.81 16 17 N -0.60 -15.63 3.46 -165.71 -0.57 -16.21 16 18 C -0.21 -5.98 10.42 -15.06 -0.16 -6.14 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 21 N -0.92 -26.81 10.12 55.49 0.56 -26.25 16 22 Si 0.92 22.08 29.55 -169.99 -5.02 17.05 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.16 3.47 7.05 -2.41 -0.02 3.45 16 27 C -0.19 -3.45 7.06 -89.22 -0.63 -4.08 16 28 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.45 6.45 -51.93 -0.33 0.12 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.37 6.98 -51.93 -0.36 0.01 16 34 H 0.06 0.34 7.07 -51.93 -0.37 -0.02 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.85 7.02 -51.93 -0.36 0.49 16 37 H 0.05 0.52 5.58 -51.93 -0.29 0.23 16 38 H 0.07 0.89 7.26 -51.93 -0.38 0.52 16 39 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 40 H 0.11 0.77 5.85 -51.93 -0.30 0.47 16 41 H 0.40 4.50 8.83 -40.82 -0.36 4.14 16 42 H 0.14 3.69 5.34 -51.93 -0.28 3.41 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -31.05 356.33 -10.02 -41.07 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.58 Total: 5.26 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -2.54 Total: -6.93 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.31 Total: -52.48 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.34 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.05 -10.02 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026133028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.456 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.85 seconds