Wall clock time and date at job start Tue Mar 31 2020 07:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47077 * 2 1 4 4 C 1.53004 * 109.47502 * 120.00588 * 2 1 3 5 5 C 1.52997 * 115.54796 * 325.67029 * 4 2 1 6 6 C 1.52993 * 117.49702 * 111.37427 * 4 2 1 7 7 C 1.52996 * 117.49753 * 179.97438 * 4 2 1 8 8 H 1.09002 * 117.50298 * 0.02562 * 7 4 2 9 9 C 1.50699 * 117.49722 * 145.02409 * 7 4 2 10 10 O 1.21282 * 119.99994 * 359.97438 * 9 7 4 11 11 N 1.34778 * 120.00162 * 180.02562 * 9 7 4 12 12 C 1.46498 * 119.99884 * 180.02562 * 11 9 7 13 13 H 1.08990 * 115.52138 * 9.57381 * 12 11 9 14 14 C 1.57119 * 116.95323 * 222.99524 * 12 11 9 15 15 H 1.08997 * 119.80929 * 3.78409 * 14 12 11 16 16 C 1.54792 * 118.02050 * 161.36561 * 14 12 11 17 17 N 1.48144 * 104.42136 * 86.47373 * 16 14 12 18 18 C 1.36934 * 127.83990 * 140.36569 * 17 16 14 19 19 H 1.07999 * 119.99891 * 338.37584 * 18 17 16 20 20 C 1.38819 * 120.00050 * 158.37202 * 18 17 16 21 21 N 1.31617 * 119.99821 * 335.55641 * 20 18 17 22 22 Si 1.86792 * 119.99988 * 155.55891 * 20 18 17 23 23 H 1.48497 * 109.47419 * 59.99879 * 22 20 18 24 24 H 1.48504 * 109.47529 * 299.99920 * 22 20 18 25 25 H 1.48504 * 109.47241 * 180.02562 * 22 20 18 26 26 C 1.48148 * 104.32455 * 320.10976 * 17 16 14 27 27 C 1.53000 * 117.44132 * 154.99835 * 12 11 9 28 28 H 1.09004 * 119.54106 * 354.27840 * 27 12 11 29 29 H 1.08993 * 109.47574 * 59.99546 * 1 2 3 30 30 H 1.08999 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46909 * 299.99195 * 1 2 3 32 32 H 1.09007 * 109.47107 * 240.00780 * 2 1 3 33 33 H 1.09001 * 109.47149 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47289 * 300.00628 * 3 2 1 35 35 H 1.09002 * 109.46870 * 60.01038 * 3 2 1 36 36 H 1.09001 * 109.46990 * 274.32863 * 5 4 2 37 37 H 1.09002 * 109.47257 * 34.32690 * 5 4 2 38 38 H 1.09000 * 109.47106 * 154.32943 * 5 4 2 39 39 H 1.09004 * 117.50541 * 0.02562 * 6 4 2 40 40 H 1.09001 * 117.49915 * 214.97732 * 6 4 2 41 41 H 0.96996 * 119.99700 * 359.97438 * 11 9 7 42 42 H 1.09004 * 110.54118 * 327.73452 * 16 14 12 43 43 H 1.08995 * 110.46616 * 205.17684 * 16 14 12 44 44 H 0.97000 * 119.99961 * 354.38145 * 21 20 18 45 45 H 1.09004 * 110.40972 * 158.62513 * 26 17 16 46 46 H 1.08994 * 110.40786 * 280.94497 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.1854 -0.5484 2.5063 6 6 2.7419 -2.0663 1.0511 7 6 3.5551 -0.8287 1.4338 8 1 4.1885 -0.3850 0.6656 9 6 4.0915 -0.7561 2.8402 10 8 3.3295 -0.6170 3.7734 11 7 5.4182 -0.8446 3.0609 12 6 5.9395 -0.7746 4.4281 13 1 5.1906 -0.8143 5.2189 14 6 7.2231 0.1023 4.6568 15 1 7.6449 0.6717 3.8287 16 6 7.5445 0.5582 6.1008 17 7 8.3241 -0.5622 6.6765 18 6 9.4161 -0.4900 7.4996 19 1 10.0132 0.4095 7.5270 20 6 9.7555 -1.5731 8.2989 21 7 8.8355 -2.4470 8.6484 22 14 11.5180 -1.7900 8.8785 23 1 11.9235 -0.6095 9.6829 24 1 12.4141 -1.9183 7.7013 25 1 11.6178 -3.0153 9.7117 26 6 7.6506 -1.7785 6.1648 27 6 7.2905 -1.4384 4.7025 28 1 7.7752 -2.0159 3.9153 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5137 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 1.4779 0.3666 3.0214 37 1 0.1340 -0.4869 2.2252 38 1 1.3353 -1.4016 3.1678 39 1 2.8407 -2.4372 0.0308 40 1 2.5948 -2.8283 1.8165 41 1 6.0276 -0.9555 2.3145 42 1 6.6257 0.7122 6.6667 43 1 8.1416 1.4700 6.0885 44 1 7.9064 -2.2920 8.4167 45 1 8.3280 -2.6317 6.2009 46 1 6.7493 -1.9850 6.7419 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026133029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:30 Heat of formation + Delta-G solvation = 36.208098 kcal Electronic energy + Delta-G solvation = -23432.649938 eV Core-core repulsion = 20131.471262 eV Total energy + Delta-G solvation = -3301.178676 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.49849 -38.93042 -37.62938 -34.61102 -33.64861 -32.74668 -30.17300 -28.77726 -27.35083 -27.11205 -25.75230 -24.40088 -22.78941 -21.66533 -20.54830 -20.04936 -19.37967 -18.60260 -17.45675 -17.18124 -16.33340 -15.69977 -15.03669 -14.56766 -14.39967 -13.95704 -13.76737 -13.65242 -13.52337 -13.15299 -13.12336 -12.91982 -12.66273 -12.46423 -12.37062 -11.85612 -11.77604 -11.51243 -11.45797 -11.37586 -10.84751 -10.79089 -10.70338 -10.56053 -10.31843 -10.23894 -10.04302 -10.01348 -9.65876 -9.53121 -9.24227 -8.57297 -8.33784 -7.01039 -6.14672 -3.20883 2.44580 3.01610 3.48470 3.51873 3.54395 3.70187 4.12931 4.30210 4.39740 4.53624 4.57077 4.65645 4.89943 4.94625 4.97961 5.03732 5.20239 5.25486 5.30787 5.37648 5.40772 5.44897 5.52379 5.59240 5.67585 5.71486 5.71822 5.76779 5.79710 5.87493 5.91748 5.99384 6.05574 6.06005 6.13248 6.37705 6.46509 6.60222 6.71104 6.75567 6.95177 6.97277 7.55498 7.72903 8.28098 8.42877 8.95517 9.76358 10.39511 11.21084 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.044705 B = 0.002660 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.173337 B =10523.084164 C =10648.909765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.082 4.082 5 C -0.109 4.109 6 C -0.147 4.147 7 C -0.187 4.187 8 H 0.120 0.880 9 C 0.544 3.456 10 O -0.532 6.532 11 N -0.695 5.695 12 C 0.097 3.903 13 H 0.134 0.866 14 C -0.181 4.181 15 H 0.106 0.894 16 C 0.155 3.845 17 N -0.596 5.596 18 C -0.331 4.331 19 H 0.065 0.935 20 C -0.026 4.026 21 N -0.917 5.917 22 Si 1.070 2.930 23 H -0.292 1.292 24 H -0.293 1.293 25 H -0.284 1.284 26 C 0.166 3.834 27 C -0.173 4.173 28 H 0.103 0.897 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.399 0.601 42 H 0.027 0.973 43 H 0.054 0.946 44 H 0.269 0.731 45 H 0.068 0.932 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.767 3.440 -20.258 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 C -0.204 4.204 4 C -0.083 4.083 5 C -0.166 4.166 6 C -0.185 4.185 7 C -0.208 4.208 8 H 0.138 0.862 9 C 0.331 3.669 10 O -0.408 6.408 11 N -0.343 5.343 12 C -0.009 4.009 13 H 0.151 0.849 14 C -0.203 4.203 15 H 0.124 0.876 16 C 0.028 3.972 17 N -0.321 5.321 18 C -0.459 4.459 19 H 0.083 0.917 20 C -0.228 4.228 21 N -0.557 5.557 22 Si 0.900 3.100 23 H -0.219 1.219 24 H -0.220 1.220 25 H -0.210 1.210 26 C 0.039 3.961 27 C -0.194 4.194 28 H 0.121 0.879 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.232 0.768 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -13.149 2.549 -18.614 22.932 hybrid contribution -0.371 1.011 -1.430 1.790 sum -13.520 3.560 -20.044 24.438 Atomic orbital electron populations 1.21901 0.94659 1.01944 1.01896 1.20693 0.96054 0.95913 0.95122 1.21825 1.01076 0.95616 1.01835 1.21583 0.90679 0.98289 0.97702 1.21468 0.97324 1.03691 0.94073 1.23205 1.01707 0.90780 1.02792 1.22310 0.96203 1.06406 0.95853 0.86191 1.19631 0.81838 0.75745 0.89682 1.90709 1.56608 1.48746 1.44784 1.45339 1.07156 1.73455 1.08353 1.22491 0.90394 1.03641 0.84381 0.84878 1.25122 1.00416 0.94512 1.00207 0.87623 1.21190 0.94565 0.92450 0.88957 1.45271 1.32328 0.99361 1.55130 1.19739 1.02240 1.04677 1.19238 0.91715 1.25903 1.05965 0.95645 0.95281 1.70765 1.02187 1.39614 1.43176 0.83448 0.74577 0.76051 0.75971 1.21893 1.22046 1.20978 1.21123 0.95882 0.91829 0.87252 1.24401 0.97654 0.96150 1.01204 0.87893 0.92760 0.92480 0.91841 0.91128 0.92708 0.92698 0.92330 0.91409 0.92592 0.91730 0.87972 0.88175 0.76774 0.95572 0.92790 0.92006 0.91378 0.95410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.20 37.16 0.30 -0.68 16 2 C -0.06 -0.44 2.98 -90.62 -0.27 -0.71 16 3 C -0.15 -1.10 9.03 37.16 0.34 -0.76 16 4 C -0.08 -0.77 1.91 -154.51 -0.29 -1.06 16 5 C -0.11 -1.21 7.73 37.16 0.29 -0.92 16 6 C -0.15 -1.30 9.52 -26.76 -0.25 -1.55 16 7 C -0.19 -1.85 5.39 -91.80 -0.49 -2.35 16 8 H 0.12 0.96 7.61 -51.93 -0.40 0.56 16 9 C 0.54 7.45 7.59 -10.99 -0.08 7.37 16 10 O -0.53 -9.11 12.67 5.56 0.07 -9.04 16 11 N -0.70 -9.24 5.57 -51.65 -0.29 -9.53 16 12 C 0.10 1.62 6.19 -65.70 -0.41 1.22 16 13 H 0.13 2.53 7.40 -51.93 -0.38 2.15 16 14 C -0.18 -3.24 7.25 -86.77 -0.63 -3.87 16 15 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 16 C 0.15 3.35 7.08 -2.19 -0.02 3.34 16 17 N -0.60 -15.46 3.22 -168.60 -0.54 -16.01 16 18 C -0.33 -9.48 10.19 -15.06 -0.15 -9.63 16 19 H 0.07 1.83 7.94 -52.49 -0.42 1.42 16 20 C -0.03 -0.75 5.12 -17.43 -0.09 -0.84 16 21 N -0.92 -28.04 12.82 55.49 0.71 -27.33 16 22 Si 1.07 25.44 29.98 -169.99 -5.10 20.34 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.17 3.91 4.99 -2.40 -0.01 3.90 16 27 C -0.17 -3.20 6.91 -89.22 -0.62 -3.82 16 28 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.45 6.45 -51.93 -0.33 0.12 16 32 H 0.07 0.47 7.90 -51.92 -0.41 0.06 16 33 H 0.05 0.42 7.29 -51.93 -0.38 0.04 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.88 7.26 -51.93 -0.38 0.50 16 37 H 0.06 0.51 5.58 -51.93 -0.29 0.22 16 38 H 0.06 0.83 7.02 -51.93 -0.36 0.46 16 39 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 40 H 0.10 0.98 8.05 -51.93 -0.42 0.57 16 41 H 0.40 4.20 8.83 -40.82 -0.36 3.84 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.27 8.27 6.42 -40.82 -0.26 8.01 16 45 H 0.07 1.76 7.47 -51.93 -0.39 1.37 16 46 H 0.03 0.69 7.66 -51.93 -0.40 0.29 16 LS Contribution 361.73 15.07 5.45 5.45 Total: -1.00 -32.43 361.73 -9.86 -42.29 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.77 Total: 4.20 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.39 Total: -10.38 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.12 Total: -52.87 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.10 Total: 20.34 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.43 -9.86 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026133029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.503 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds