Wall clock time and date at job start Tue Mar 31 2020 07:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 C 1.53000 * 109.47571 * 120.00266 * 2 1 3 5 5 C 1.53000 * 115.54836 * 274.53549 * 4 2 1 6 6 C 1.52998 * 117.52128 * 128.82691 * 4 2 1 7 7 C 1.53001 * 60.00287 * 252.52321 * 6 4 2 8 8 H 1.08998 * 117.51508 * 252.52043 * 7 6 4 9 9 C 1.50699 * 117.50154 * 107.48955 * 7 6 4 10 10 O 1.21284 * 119.99640 * 329.30412 * 9 7 6 11 11 N 1.34773 * 120.00195 * 149.02356 * 9 7 6 12 12 C 1.46502 * 120.00087 * 180.27183 * 11 9 7 13 13 H 1.09002 * 115.51589 * 350.42421 * 12 11 9 14 14 C 1.52996 * 117.44285 * 205.00265 * 12 11 9 15 15 H 1.09000 * 119.53961 * 5.72371 * 14 12 11 16 16 C 1.54386 * 118.12092 * 160.81277 * 14 12 11 17 17 N 1.48144 * 104.61825 * 87.19028 * 16 14 12 18 18 C 1.36941 * 127.83450 * 140.41090 * 17 16 14 19 19 H 1.08012 * 119.99507 * 191.75193 * 18 17 16 20 20 C 1.38810 * 120.00541 * 11.75851 * 18 17 16 21 21 N 1.31614 * 119.99652 * 12.84308 * 20 18 17 22 22 Si 1.86796 * 120.00091 * 192.84625 * 20 18 17 23 23 H 1.48499 * 109.47222 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46951 * 119.99665 * 22 20 18 25 25 H 1.48498 * 109.47019 * 239.99602 * 22 20 18 26 26 C 1.48144 * 104.32630 * 320.41720 * 17 16 14 27 27 C 1.52999 * 117.43914 * 135.76476 * 12 11 9 28 28 H 1.09002 * 119.53921 * 355.88381 * 27 12 11 29 29 H 1.09003 * 109.47372 * 51.19432 * 1 2 3 30 30 H 1.08999 * 109.47241 * 171.19929 * 1 2 3 31 31 H 1.09000 * 109.46960 * 291.19474 * 1 2 3 32 32 H 1.09000 * 109.47068 * 240.00078 * 2 1 3 33 33 H 1.09010 * 109.47336 * 172.64886 * 3 2 1 34 34 H 1.08997 * 109.47271 * 292.64570 * 3 2 1 35 35 H 1.09002 * 109.47222 * 52.64674 * 3 2 1 36 36 H 1.09007 * 109.46636 * 205.66425 * 5 4 2 37 37 H 1.08996 * 109.47023 * 325.66533 * 5 4 2 38 38 H 1.09000 * 109.47583 * 85.66958 * 5 4 2 39 39 H 1.08998 * 117.49952 * 145.02823 * 6 4 2 40 40 H 1.09004 * 117.49897 * 0.02562 * 6 4 2 41 41 H 0.96997 * 119.99650 * 0.28430 * 11 9 7 42 42 H 1.09006 * 110.40952 * 205.97675 * 16 14 12 43 43 H 1.09004 * 110.41143 * 328.40712 * 16 14 12 44 44 H 0.97001 * 119.99992 * 180.02562 * 21 20 18 45 45 H 1.08997 * 110.41001 * 158.36978 * 26 17 16 46 46 H 1.08997 * 110.40431 * 280.68598 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.1571 0.1411 2.5075 6 6 3.0778 -1.8281 1.0522 7 6 1.6396 -2.1867 1.4318 8 1 1.4594 -2.5362 2.4483 9 6 0.7735 -2.8092 0.3672 10 8 0.9499 -2.5278 -0.7992 11 7 -0.1933 -3.6831 0.7108 12 6 -1.0313 -4.2928 -0.3246 13 1 -0.9234 -3.8717 -1.3242 14 6 -2.4216 -4.7792 0.0894 15 1 -2.7829 -4.5784 1.0980 16 6 -3.4750 -4.9994 -1.0176 17 7 -3.2506 -6.3902 -1.4759 18 6 -4.1921 -7.3253 -1.8144 19 1 -3.9037 -8.3573 -1.9501 20 6 -5.5169 -6.9469 -1.9833 21 7 -5.8311 -5.6717 -2.0696 22 14 -6.8536 -8.2474 -2.0878 23 1 -6.2434 -9.5956 -1.9647 24 1 -7.8300 -8.0432 -0.9877 25 1 -7.5502 -8.1373 -3.3946 26 6 -1.7768 -6.5400 -1.4847 27 6 -1.3019 -5.7949 -0.2186 28 1 -0.8187 -6.3738 0.5685 29 1 -0.3634 0.6440 -0.8008 30 1 -0.3634 -1.0155 -0.1572 31 1 -0.3633 0.3715 0.9582 32 1 1.8933 -0.5138 -0.8900 33 1 3.1221 1.4453 0.1315 34 1 1.7881 1.9169 -0.9484 35 1 1.5732 1.9929 0.8169 36 1 2.9117 -0.2833 3.1699 37 1 2.4471 1.1540 2.2281 38 1 1.1961 0.1670 3.0211 39 1 3.8440 -1.9419 1.8190 40 1 3.3977 -2.0425 0.0324 41 1 -0.3343 -3.9081 1.6437 42 1 -4.4810 -4.8905 -0.6121 43 1 -3.3169 -4.2989 -1.8376 44 1 -6.7569 -5.4072 -2.1872 45 1 -1.5014 -7.5933 -1.4317 46 1 -1.3536 -6.0818 -2.3786 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026133031.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:59 Heat of formation + Delta-G solvation = 41.070128 kcal Electronic energy + Delta-G solvation = -23783.197012 eV Core-core repulsion = 20482.229169 eV Total energy + Delta-G solvation = -3300.967843 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 3.58 seconds Orbital eigenvalues (eV) -40.59576 -38.91872 -37.36076 -34.42676 -33.58507 -32.56481 -30.28647 -28.92691 -27.15069 -26.98165 -25.90771 -24.25352 -22.66139 -21.56402 -20.47822 -20.03914 -19.29194 -18.58384 -17.05166 -16.87297 -16.21799 -15.53041 -14.97028 -14.71138 -14.56750 -14.09487 -13.70917 -13.38558 -13.38227 -13.15157 -12.78476 -12.71749 -12.57148 -12.20006 -12.09186 -11.77586 -11.53140 -11.50870 -11.33898 -11.17345 -11.01115 -10.84255 -10.73136 -10.37191 -10.23115 -10.16166 -10.11070 -9.89675 -9.72694 -9.57275 -9.17503 -8.72739 -8.30070 -6.90357 -5.79840 -3.11474 2.45199 3.12090 3.38287 3.44285 3.46832 3.69678 4.31684 4.40078 4.46370 4.51553 4.65725 4.74735 4.94257 5.11802 5.17165 5.22439 5.33879 5.38363 5.38948 5.44984 5.53614 5.55156 5.57395 5.62934 5.76376 5.82595 5.84290 5.87668 5.89838 5.90908 5.94378 6.15836 6.19169 6.24578 6.41223 6.46425 6.53721 6.69316 6.84065 6.89617 7.34894 7.52075 7.63422 7.71644 8.19337 8.35388 9.10548 9.73933 10.49711 11.34408 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.034237 B = 0.002990 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.638522 B = 9362.401036 C = 9722.193773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.061 4.061 3 C -0.145 4.145 4 C -0.083 4.083 5 C -0.122 4.122 6 C -0.141 4.141 7 C -0.189 4.189 8 H 0.116 0.884 9 C 0.548 3.452 10 O -0.535 6.535 11 N -0.696 5.696 12 C 0.097 3.903 13 H 0.131 0.869 14 C -0.179 4.179 15 H 0.102 0.898 16 C 0.183 3.817 17 N -0.594 5.594 18 C -0.226 4.226 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.914 5.914 22 Si 0.912 3.088 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.156 3.844 27 C -0.183 4.183 28 H 0.102 0.898 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.398 0.602 42 H 0.094 0.906 43 H 0.024 0.976 44 H 0.254 0.746 45 H 0.051 0.949 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.623 11.360 10.558 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C -0.202 4.202 4 C -0.084 4.084 5 C -0.179 4.179 6 C -0.178 4.178 7 C -0.211 4.211 8 H 0.134 0.866 9 C 0.336 3.664 10 O -0.412 6.412 11 N -0.344 5.344 12 C -0.008 4.008 13 H 0.148 0.852 14 C -0.201 4.201 15 H 0.120 0.880 16 C 0.057 3.943 17 N -0.317 5.317 18 C -0.354 4.354 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.561 5.561 22 Si 0.742 3.258 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.029 3.971 27 C -0.205 4.205 28 H 0.120 0.880 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.232 0.768 42 H 0.112 0.888 43 H 0.042 0.958 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 16.469 11.500 9.635 22.278 hybrid contribution -0.877 -0.938 0.709 1.467 sum 15.592 10.562 10.343 21.486 Atomic orbital electron populations 1.21933 0.94832 1.03022 1.00838 1.20710 0.96024 0.95095 0.96104 1.21905 1.00679 0.96079 1.01526 1.21560 1.01407 0.87721 0.97723 1.21503 1.01849 0.99828 0.94717 1.23229 0.89843 1.01248 1.03487 1.22378 0.98918 1.00431 0.99324 0.86608 1.19452 0.79769 0.78136 0.89072 1.90684 1.69614 1.61392 1.19548 1.45338 1.34543 1.44556 1.09929 1.21826 0.92651 0.93376 0.92984 0.85173 1.24630 0.90504 1.02688 1.02248 0.87968 1.21098 0.96444 0.85637 0.91127 1.45219 0.99098 1.10860 1.76542 1.19056 0.87189 0.88518 1.40605 0.90345 1.24834 0.97705 0.96330 1.01550 1.69920 1.17396 1.13850 1.54917 0.86055 0.81894 0.80605 0.77267 1.20394 1.21622 1.21733 1.21103 0.86311 0.97111 0.92534 1.24356 1.03085 0.90697 1.02313 0.88011 0.92860 0.91554 0.93480 0.89248 0.92752 0.92742 0.92658 0.92432 0.90943 0.92064 0.88130 0.87699 0.76850 0.88762 0.95764 0.93605 0.93019 0.95502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.65 37.15 0.32 -1.52 16 2 C -0.06 -0.67 2.20 -90.62 -0.20 -0.87 16 3 C -0.14 -1.27 7.91 37.16 0.29 -0.97 16 4 C -0.08 -0.79 1.89 -154.51 -0.29 -1.08 16 5 C -0.12 -0.89 9.53 37.16 0.35 -0.53 16 6 C -0.14 -1.30 9.36 -26.73 -0.25 -1.55 16 7 C -0.19 -1.94 5.82 -91.77 -0.53 -2.47 16 8 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 9 C 0.55 7.56 5.46 -10.99 -0.06 7.50 16 10 O -0.53 -9.12 12.57 5.55 0.07 -9.05 16 11 N -0.70 -9.42 5.56 -53.81 -0.30 -9.72 16 12 C 0.10 1.66 5.97 -67.93 -0.41 1.25 16 13 H 0.13 2.52 7.40 -51.93 -0.38 2.14 16 14 C -0.18 -3.40 7.06 -89.22 -0.63 -4.03 16 15 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 16 C 0.18 4.43 5.77 -2.41 -0.01 4.42 16 17 N -0.59 -15.34 3.38 -168.86 -0.57 -15.91 16 18 C -0.23 -6.32 10.35 -15.06 -0.16 -6.47 16 19 H 0.08 2.12 7.86 -52.48 -0.41 1.71 16 20 C -0.01 -0.21 5.37 -17.43 -0.09 -0.30 16 21 N -0.91 -26.85 10.83 55.49 0.60 -26.25 16 22 Si 0.91 21.96 29.57 -169.99 -5.03 16.93 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C 0.16 3.34 7.04 -2.41 -0.02 3.33 16 27 C -0.18 -3.30 7.06 -89.22 -0.63 -3.93 16 28 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.07 0.98 4.83 -51.93 -0.25 0.73 16 31 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.09 1.19 6.57 -51.93 -0.34 0.85 16 33 H 0.05 0.43 8.09 -51.92 -0.42 0.01 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.43 6.95 -51.93 -0.36 0.07 16 36 H 0.06 0.35 7.90 -51.92 -0.41 -0.06 16 37 H 0.07 0.48 5.73 -51.93 -0.30 0.19 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 40 H 0.10 1.12 7.90 -51.93 -0.41 0.71 16 41 H 0.40 4.31 8.83 -40.82 -0.36 3.95 16 42 H 0.09 2.54 6.37 -51.93 -0.33 2.20 16 43 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -31.15 358.83 -9.89 -41.04 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.76 Total: 4.79 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -2.31 Total: -7.24 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.27 Total: -51.88 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.05 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.15 -9.89 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026133031.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.111 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.58 seconds