Wall clock time and date at job start Tue Mar 31 2020 07:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50701 * 119.99616 * 2 1 4 4 C 1.52997 * 109.47267 * 359.97438 * 3 2 1 5 5 C 1.53007 * 109.46739 * 239.99584 * 3 2 1 6 6 C 1.50697 * 109.46914 * 120.00175 * 3 2 1 7 7 O 1.21278 * 120.00364 * 354.29069 * 6 3 2 8 8 N 1.34779 * 119.99856 * 174.29531 * 6 3 2 9 9 C 1.48558 * 126.16985 * 354.37197 * 8 6 3 10 10 C 1.50354 * 105.18763 * 172.72559 * 9 8 6 11 11 H 1.09006 * 110.05995 * 279.64068 * 10 9 8 12 12 C 1.51011 * 125.53593 * 144.45277 * 10 9 8 13 13 C 1.56398 * 101.59880 * 204.55601 * 12 10 9 14 14 C 1.55945 * 105.78746 * 25.01520 * 13 12 10 15 15 H 1.08996 * 110.49528 * 248.87274 * 14 13 12 16 16 N 1.46501 * 110.49071 * 126.34798 * 14 13 12 17 17 C 1.36938 * 120.00269 * 88.26226 * 16 14 13 18 18 H 1.07996 * 119.99804 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99886 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00082 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99768 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47269 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47500 * 119.99995 * 21 19 17 24 24 H 1.48501 * 109.46958 * 240.00115 * 21 19 17 25 25 C 1.50291 * 104.15635 * 7.54538 * 14 13 12 26 26 H 1.09005 * 109.98625 * 80.46650 * 25 14 13 27 27 C 1.49699 * 126.06127 * 174.82212 * 8 6 3 28 28 H 1.07999 * 119.99663 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00006 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00006 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47007 * 181.73341 * 4 3 2 32 32 H 1.09000 * 109.47124 * 301.73436 * 4 3 2 33 33 H 1.09001 * 109.46948 * 61.74123 * 4 3 2 34 34 H 1.08995 * 109.47189 * 291.11327 * 5 3 2 35 35 H 1.08997 * 109.46690 * 51.11372 * 5 3 2 36 36 H 1.09000 * 109.46737 * 171.11071 * 5 3 2 37 37 H 1.08998 * 110.06584 * 53.84842 * 9 8 6 38 38 H 1.08991 * 110.34227 * 291.74639 * 9 8 6 39 39 H 1.09002 * 110.99389 * 86.48005 * 12 10 9 40 40 H 1.08999 * 111.00180 * 322.63717 * 12 10 9 41 41 H 1.09003 * 110.18821 * 265.93726 * 13 12 10 42 42 H 1.08996 * 110.25260 * 144.13220 * 13 12 10 43 43 H 0.97006 * 119.99803 * 268.25984 * 16 14 13 44 44 H 0.97003 * 119.99765 * 179.97438 * 20 19 17 45 45 H 1.09001 * 110.84385 * 36.66342 * 27 8 6 46 46 H 1.09003 * 110.84348 * 273.05615 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2493 6 6 2.9299 1.3850 1.2304 7 8 2.8584 0.5219 2.0795 8 7 3.7841 2.4156 1.3874 9 6 4.0682 3.4787 0.3894 10 6 4.9365 4.4729 1.1092 11 1 4.3223 5.1253 1.7299 12 6 6.0673 5.2602 0.4912 13 6 6.9535 5.5721 1.7415 14 6 6.6355 4.4507 2.7774 15 1 6.0954 4.8612 3.6306 16 7 7.8693 3.7962 3.2197 17 6 8.5659 4.2977 4.2867 18 1 8.2055 5.1755 4.8024 19 6 9.7347 3.6773 4.7060 20 7 10.1736 2.6072 4.0778 21 14 10.6845 4.3610 6.1619 22 1 9.9857 5.5604 6.6898 23 1 10.7688 3.3293 7.2267 24 1 12.0538 4.7367 5.7272 25 6 5.7672 3.4859 2.0197 26 1 6.3849 2.8381 1.3976 27 6 4.6238 2.6879 2.5964 28 1 -0.5399 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.6139 3.4117 -0.0317 32 1 0.4226 2.3927 -0.8749 33 1 0.4630 2.4282 0.9043 34 1 3.7500 0.6572 -1.1734 35 1 2.3411 1.1711 -2.1321 36 1 3.3650 2.3878 -1.3323 37 1 3.1386 3.9491 0.0691 38 1 4.5983 3.0624 -0.4671 39 1 5.6994 6.1788 0.0341 40 1 6.6132 4.6564 -0.2338 41 1 6.6943 6.5480 2.1523 42 1 8.0092 5.5465 1.4716 43 1 8.1928 3.0075 2.7567 44 1 10.9906 2.1739 4.3707 45 1 4.9831 1.7577 3.0366 46 1 4.0704 3.2762 3.3284 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026329237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:35 Heat of formation + Delta-G solvation = 17.891778 kcal Electronic energy + Delta-G solvation = -24351.344157 eV Core-core repulsion = 21049.371225 eV Total energy + Delta-G solvation = -3301.972931 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88362 -39.13967 -36.34474 -35.39534 -33.41818 -31.37062 -30.90602 -29.08562 -28.54400 -27.70411 -25.46180 -24.56849 -23.11285 -22.58230 -20.28244 -20.11671 -19.19988 -18.29367 -17.11912 -16.78823 -16.39332 -15.56939 -15.21757 -14.84014 -14.68586 -14.36812 -14.02056 -13.87230 -13.53059 -13.10571 -12.96521 -12.73907 -12.56891 -12.38639 -12.13256 -11.91589 -11.75421 -11.48246 -11.42332 -11.29424 -11.07866 -10.85028 -10.80554 -10.73171 -10.42947 -10.14736 -10.09961 -9.80399 -9.75305 -9.60003 -9.38801 -8.92425 -8.57054 -6.97784 -5.78037 -3.07205 2.08567 2.69310 2.99741 3.42752 3.48500 3.50712 4.10391 4.32676 4.49897 4.57399 4.71985 4.82733 4.83481 5.08308 5.16375 5.18165 5.25059 5.35142 5.37251 5.47275 5.52146 5.54352 5.56766 5.59884 5.71828 5.73740 5.84280 5.90241 5.92404 5.97183 6.01072 6.06004 6.13068 6.22495 6.33241 6.35818 6.44687 6.50530 6.58825 6.62985 6.77493 7.04776 7.58811 7.70126 8.21914 8.40140 9.51562 10.08380 10.42672 11.44459 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.025992 B = 0.003563 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.998982 B = 7856.171644 C = 8468.959092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 C -0.052 4.052 4 C -0.147 4.147 5 C -0.150 4.150 6 C 0.540 3.460 7 O -0.538 6.538 8 N -0.621 5.621 9 C 0.113 3.887 10 C -0.131 4.131 11 H 0.081 0.919 12 C -0.096 4.096 13 C -0.144 4.144 14 C 0.196 3.804 15 H 0.055 0.945 16 N -0.720 5.720 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.117 4.117 26 H 0.081 0.919 27 C 0.127 3.873 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.082 0.918 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.908 2.218 -13.289 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.138 4.138 3 C -0.055 4.055 4 C -0.204 4.204 5 C -0.208 4.208 6 C 0.328 3.672 7 O -0.414 6.414 8 N -0.356 5.356 9 C -0.008 4.008 10 C -0.150 4.150 11 H 0.100 0.900 12 C -0.135 4.135 13 C -0.185 4.185 14 C 0.085 3.915 15 H 0.073 0.927 16 N -0.360 5.360 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.137 4.137 26 H 0.099 0.901 27 C 0.006 3.994 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.101 0.899 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.935 1.752 -12.659 22.022 hybrid contribution 0.759 0.029 0.660 1.007 sum -17.176 1.782 -11.998 21.027 Atomic orbital electron populations 1.23925 0.95815 1.02110 1.01507 1.22504 0.95645 0.96649 0.98992 1.19836 0.95577 0.95781 0.94280 1.22026 0.98666 0.96853 1.02818 1.22109 0.99449 1.03565 0.95635 1.20077 0.79431 0.80139 0.87564 1.90707 1.67833 1.38266 1.44627 1.49648 1.42101 1.25994 1.17870 1.21509 0.99137 0.88446 0.91752 1.22216 0.96610 0.96865 0.99338 0.90023 1.21737 0.94986 0.98645 0.98110 1.23807 1.00170 0.99572 0.94905 1.20086 0.87403 0.90366 0.93663 0.92740 1.42501 1.23999 1.33135 1.36409 1.19284 1.03255 1.08708 1.05860 0.91090 1.24748 0.98566 0.97899 0.99665 1.69670 1.24091 1.21625 1.42588 0.86141 0.79845 0.78021 0.82319 1.20544 1.21879 1.21904 1.22496 0.95471 0.96766 0.98993 0.90070 1.21523 0.90579 1.00553 0.86723 0.88314 0.87978 0.86947 0.91293 0.91071 0.91848 0.91913 0.91429 0.90556 0.90828 0.90754 0.92172 0.91609 0.92699 0.90736 0.78171 0.93540 0.89921 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.83 13.70 29.01 0.40 -1.43 16 2 C -0.12 -1.32 7.99 -36.03 -0.29 -1.60 16 3 C -0.05 -0.55 0.72 -156.81 -0.11 -0.67 16 4 C -0.15 -1.25 6.99 37.16 0.26 -0.99 16 5 C -0.15 -1.33 7.83 37.16 0.29 -1.04 16 6 C 0.54 7.97 6.58 -10.99 -0.07 7.90 16 7 O -0.54 -10.21 16.36 5.56 0.09 -10.12 16 8 N -0.62 -8.53 3.41 -172.13 -0.59 -9.12 16 9 C 0.11 1.21 4.68 -4.23 -0.02 1.19 16 10 C -0.13 -1.57 2.80 -90.26 -0.25 -1.83 16 11 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.10 -1.18 6.72 -25.90 -0.17 -1.36 16 13 C -0.14 -2.31 6.74 -23.33 -0.16 -2.47 16 14 C 0.20 3.66 3.40 -67.71 -0.23 3.43 16 15 H 0.05 1.05 8.10 -51.93 -0.42 0.62 16 16 N -0.72 -17.46 5.11 -53.21 -0.27 -17.74 16 17 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 C -0.12 -1.85 2.40 -90.34 -0.22 -2.06 16 26 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 27 C 0.13 2.01 6.83 -3.32 -0.02 1.99 16 28 H 0.10 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.10 0.82 5.69 -52.49 -0.30 0.53 16 30 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.07 0.53 5.23 -51.93 -0.27 0.26 16 32 H 0.07 0.48 7.39 -51.93 -0.38 0.09 16 33 H 0.06 0.59 7.60 -51.93 -0.39 0.19 16 34 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 35 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.08 0.59 4.61 -51.93 -0.24 0.35 16 37 H 0.07 0.63 5.28 -51.93 -0.27 0.35 16 38 H 0.07 0.74 6.40 -51.93 -0.33 0.40 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.38 7.98 -51.93 -0.41 0.96 16 43 H 0.38 10.03 7.66 -40.82 -0.31 9.72 16 44 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 352.78 15.07 5.32 5.32 Total: -1.00 -31.73 352.78 -8.11 -39.84 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.52 Total: 7.89 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -0.84 Total: -6.06 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.13 Total: -54.11 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.73 -8.11 -39.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026329237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.734 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds