Wall clock time and date at job start Tue Mar 31 2020 07:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50701 * 119.99616 * 2 1 4 4 C 1.52997 * 109.47267 * 359.97438 * 3 2 1 5 5 C 1.53007 * 109.46739 * 239.99584 * 3 2 1 6 6 C 1.50697 * 109.46914 * 120.00175 * 3 2 1 7 7 O 1.21278 * 120.00364 * 354.29069 * 6 3 2 8 8 N 1.34779 * 119.99856 * 174.29531 * 6 3 2 9 9 C 1.48558 * 126.16985 * 354.37197 * 8 6 3 10 10 C 1.50354 * 105.18763 * 172.72559 * 9 8 6 11 11 H 1.09006 * 110.05995 * 279.64068 * 10 9 8 12 12 C 1.51011 * 125.53593 * 144.45277 * 10 9 8 13 13 C 1.56398 * 101.59880 * 204.55601 * 12 10 9 14 14 C 1.55945 * 105.78746 * 25.01520 * 13 12 10 15 15 H 1.08996 * 110.49528 * 248.87274 * 14 13 12 16 16 N 1.46501 * 110.49071 * 126.34798 * 14 13 12 17 17 C 1.36938 * 120.00269 * 88.26226 * 16 14 13 18 18 H 1.07996 * 119.99804 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99886 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00082 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99768 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47269 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47500 * 119.99995 * 21 19 17 24 24 H 1.48501 * 109.46958 * 240.00115 * 21 19 17 25 25 C 1.50291 * 104.15635 * 7.54538 * 14 13 12 26 26 H 1.09005 * 109.98625 * 80.46650 * 25 14 13 27 27 C 1.49699 * 126.06127 * 174.82212 * 8 6 3 28 28 H 1.07999 * 119.99663 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00006 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00006 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47007 * 181.73341 * 4 3 2 32 32 H 1.09000 * 109.47124 * 301.73436 * 4 3 2 33 33 H 1.09001 * 109.46948 * 61.74123 * 4 3 2 34 34 H 1.08995 * 109.47189 * 291.11327 * 5 3 2 35 35 H 1.08997 * 109.46690 * 51.11372 * 5 3 2 36 36 H 1.09000 * 109.46737 * 171.11071 * 5 3 2 37 37 H 1.08998 * 110.06584 * 53.84842 * 9 8 6 38 38 H 1.08991 * 110.34227 * 291.74639 * 9 8 6 39 39 H 1.09002 * 110.99389 * 86.48005 * 12 10 9 40 40 H 1.08999 * 111.00180 * 322.63717 * 12 10 9 41 41 H 1.09003 * 110.18821 * 265.93726 * 13 12 10 42 42 H 1.08996 * 110.25260 * 144.13220 * 13 12 10 43 43 H 0.97006 * 119.99803 * 268.25984 * 16 14 13 44 44 H 0.97003 * 119.99765 * 179.97438 * 20 19 17 45 45 H 1.09001 * 110.84385 * 36.66342 * 27 8 6 46 46 H 1.09003 * 110.84348 * 273.05615 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2493 6 6 2.9299 1.3850 1.2304 7 8 2.8584 0.5219 2.0795 8 7 3.7841 2.4156 1.3874 9 6 4.0682 3.4787 0.3894 10 6 4.9365 4.4729 1.1092 11 1 4.3223 5.1253 1.7299 12 6 6.0673 5.2602 0.4912 13 6 6.9535 5.5721 1.7415 14 6 6.6355 4.4507 2.7774 15 1 6.0954 4.8612 3.6306 16 7 7.8693 3.7962 3.2197 17 6 8.5659 4.2977 4.2867 18 1 8.2055 5.1755 4.8024 19 6 9.7347 3.6773 4.7060 20 7 10.1736 2.6072 4.0778 21 14 10.6845 4.3610 6.1619 22 1 9.9857 5.5604 6.6898 23 1 10.7688 3.3293 7.2267 24 1 12.0538 4.7367 5.7272 25 6 5.7672 3.4859 2.0197 26 1 6.3849 2.8381 1.3976 27 6 4.6238 2.6879 2.5964 28 1 -0.5399 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.6139 3.4117 -0.0317 32 1 0.4226 2.3927 -0.8749 33 1 0.4630 2.4282 0.9043 34 1 3.7500 0.6572 -1.1734 35 1 2.3411 1.1711 -2.1321 36 1 3.3650 2.3878 -1.3323 37 1 3.1386 3.9491 0.0691 38 1 4.5983 3.0624 -0.4671 39 1 5.6994 6.1788 0.0341 40 1 6.6132 4.6564 -0.2338 41 1 6.6943 6.5480 2.1523 42 1 8.0092 5.5465 1.4716 43 1 8.1928 3.0075 2.7567 44 1 10.9906 2.1739 4.3707 45 1 4.9831 1.7577 3.0366 46 1 4.0704 3.2762 3.3284 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026329237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:34 Heat of formation + Delta-G solvation = -2.161967 kcal Electronic energy + Delta-G solvation = -24352.213752 eV Core-core repulsion = 21049.371225 eV Total energy + Delta-G solvation = -3302.842527 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.00256 -40.29058 -37.30989 -36.85521 -35.10915 -32.68197 -32.24346 -30.26774 -29.85626 -28.35146 -27.02191 -25.55605 -24.86655 -23.66853 -21.43910 -21.16116 -20.49546 -19.33286 -19.02384 -17.87171 -17.50641 -16.74804 -16.48941 -16.17923 -15.73618 -15.55514 -15.48460 -15.18550 -14.72538 -14.50779 -14.08755 -13.84628 -13.47329 -13.35361 -13.21559 -13.18813 -13.07642 -12.73287 -12.68486 -12.55055 -12.31569 -12.23180 -12.09770 -12.01214 -11.80034 -11.62658 -11.52760 -11.33168 -10.97287 -10.91802 -10.75965 -10.30295 -9.70993 -8.99198 -7.94428 -5.22466 1.27228 1.46102 1.47137 1.56743 1.57847 1.94224 2.55949 2.96730 3.40108 3.46325 3.67186 3.71873 3.89296 4.00655 4.04923 4.11031 4.20788 4.27428 4.38953 4.45276 4.49270 4.56047 4.60228 4.69556 4.75684 4.76171 4.78444 4.85567 4.86879 4.94431 4.99810 5.06950 5.10979 5.15427 5.24245 5.26936 5.36411 5.38503 5.48712 5.54144 5.65013 5.68817 5.81765 6.28096 6.50470 7.08957 7.33495 8.10717 8.32331 9.29450 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.025992 B = 0.003563 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.998982 B = 7856.171644 C = 8468.959092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C -0.044 4.044 4 C -0.144 4.144 5 C -0.148 4.148 6 C 0.530 3.470 7 O -0.593 6.593 8 N -0.619 5.619 9 C 0.113 3.887 10 C -0.106 4.106 11 H 0.095 0.905 12 C -0.083 4.083 13 C -0.138 4.138 14 C 0.186 3.814 15 H 0.049 0.951 16 N -0.735 5.735 17 C -0.234 4.234 18 H 0.078 0.922 19 C -0.079 4.079 20 N -0.972 5.972 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.298 1.298 24 H -0.294 1.294 25 C -0.121 4.121 26 H 0.062 0.938 27 C 0.127 3.873 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.370 0.630 44 H 0.249 0.751 45 H 0.043 0.957 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.394 4.839 -15.313 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C -0.047 4.047 4 C -0.200 4.200 5 C -0.205 4.205 6 C 0.320 3.680 7 O -0.474 6.474 8 N -0.352 5.352 9 C -0.007 4.007 10 C -0.125 4.125 11 H 0.113 0.887 12 C -0.121 4.121 13 C -0.178 4.178 14 C 0.077 3.923 15 H 0.067 0.933 16 N -0.375 5.375 17 C -0.366 4.366 18 H 0.095 0.905 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.799 3.201 22 H -0.188 1.188 23 H -0.225 1.225 24 H -0.221 1.221 25 C -0.141 4.141 26 H 0.080 0.920 27 C 0.005 3.995 28 H 0.126 0.874 29 H 0.139 0.861 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.202 0.798 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.466 4.445 -14.721 25.599 hybrid contribution 1.445 -0.801 1.311 2.109 sum -19.021 3.644 -13.410 23.556 Atomic orbital electron populations 1.24163 0.95180 1.03453 0.98796 1.22525 0.96446 0.96377 1.01526 1.19864 0.95550 0.96718 0.92578 1.22058 0.98336 0.96045 1.03596 1.22132 0.98971 1.03967 0.95396 1.21031 0.79389 0.79215 0.88328 1.90673 1.69550 1.40280 1.46882 1.49697 1.41198 1.26626 1.17678 1.21775 1.00809 0.87185 0.90977 1.22207 0.96042 0.95966 0.98315 0.88698 1.21660 0.93903 1.00316 0.96188 1.23599 0.99437 0.98837 0.95952 1.20389 0.85645 0.91758 0.94539 0.93314 1.42725 1.25647 1.33103 1.35985 1.19676 1.02940 1.08096 1.05853 0.90458 1.25546 1.00114 0.98723 1.02730 1.69831 1.24556 1.23396 1.44543 0.85117 0.78325 0.77608 0.79014 1.18786 1.22548 1.22097 1.22256 0.95347 0.97261 0.99258 0.92000 1.21345 0.91310 0.98773 0.88042 0.87422 0.86147 0.88858 0.89931 0.88444 0.92769 0.93786 0.89245 0.88928 0.87028 0.89353 0.88463 0.91469 0.91285 0.93602 0.79839 0.94225 0.93857 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 13.70 67.77 0.93 -2.03 16 2 C -0.15 -3.19 7.99 25.64 0.20 -2.98 16 3 C -0.04 -0.86 0.72 -53.67 -0.04 -0.90 16 4 C -0.14 -1.87 6.99 71.98 0.50 -1.37 16 5 C -0.15 -2.21 7.83 71.98 0.56 -1.64 16 6 C 0.53 15.58 6.58 87.66 0.58 16.16 16 7 O -0.59 -23.62 16.36 -3.02 -0.05 -23.67 16 8 N -0.62 -16.42 3.41 -816.89 -2.78 -19.21 16 9 C 0.11 1.99 4.68 85.13 0.40 2.39 16 10 C -0.11 -2.20 2.80 -10.56 -0.03 -2.23 16 11 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 12 C -0.08 -1.72 6.72 31.13 0.21 -1.51 16 13 C -0.14 -4.22 6.74 32.80 0.22 -4.00 16 14 C 0.19 6.95 3.40 45.14 0.15 7.11 16 15 H 0.05 1.86 8.10 -2.39 -0.02 1.85 16 16 N -0.74 -36.90 5.11 -322.25 -1.65 -38.55 16 17 C -0.23 -12.94 9.97 84.03 0.84 -12.10 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 19 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 20 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 21 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 25 C -0.12 -3.82 2.40 -10.62 -0.03 -3.84 16 26 H 0.06 2.20 7.93 -2.38 -0.02 2.18 16 27 C 0.13 4.14 6.83 85.07 0.58 4.72 16 28 H 0.11 1.55 8.06 -2.91 -0.02 1.52 16 29 H 0.12 1.53 5.69 -2.91 -0.02 1.51 16 30 H 0.09 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.08 0.84 5.23 -2.39 -0.01 0.82 16 32 H 0.10 0.80 7.39 -2.39 -0.02 0.79 16 33 H 0.05 0.83 7.60 -2.39 -0.02 0.81 16 34 H 0.04 0.82 8.12 -2.39 -0.02 0.80 16 35 H 0.09 0.98 8.12 -2.39 -0.02 0.96 16 36 H 0.09 1.04 4.61 -2.39 -0.01 1.03 16 37 H 0.11 1.24 5.28 -2.39 -0.01 1.23 16 38 H 0.09 1.40 6.40 -2.39 -0.02 1.38 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.05 1.68 7.98 -2.39 -0.02 1.66 16 43 H 0.37 20.37 7.66 -92.70 -0.71 19.66 16 44 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.04 1.72 8.06 -2.39 -0.02 1.70 16 46 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -74.00 352.78 3.63 -70.37 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.25 Total: 29.04 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 5.55 Total: -6.37 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -4.15 Total: -118.09 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.05 Total: -23.67 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -74.00 3.63 -70.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026329237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.207 kcal (2) G-P(sol) polarization free energy of solvation -74.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds