Wall clock time and date at job start Tue Mar 31 2020 07:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00035 * 2 1 4 4 C 1.53002 * 109.47277 * 353.53564 * 3 2 1 5 5 C 1.53004 * 109.46819 * 113.53408 * 3 2 1 6 6 C 1.50707 * 109.47329 * 233.53250 * 3 2 1 7 7 O 1.21274 * 119.99445 * 118.69253 * 6 3 2 8 8 N 1.34777 * 119.99770 * 298.68932 * 6 3 2 9 9 C 1.49620 * 126.07330 * 355.04606 * 8 6 3 10 10 C 1.51797 * 102.35940 * 154.25265 * 9 8 6 11 11 H 1.09000 * 111.34452 * 288.44239 * 10 9 8 12 12 C 1.51565 * 123.67794 * 151.95685 * 10 9 8 13 13 C 1.56334 * 101.81717 * 208.03961 * 12 10 9 14 14 C 1.54144 * 105.54119 * 25.05339 * 13 12 10 15 15 H 1.08996 * 110.33640 * 126.63649 * 14 13 12 16 16 N 1.46499 * 109.83048 * 248.79493 * 14 13 12 17 17 C 1.36938 * 119.99657 * 270.27568 * 16 14 13 18 18 H 1.08005 * 120.00405 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99987 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99807 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00189 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46764 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46735 * 120.00046 * 21 19 17 24 24 H 1.48499 * 109.46953 * 240.00021 * 21 19 17 25 25 C 1.49708 * 104.90395 * 7.58628 * 14 13 12 26 26 H 1.09000 * 108.54545 * 77.11001 * 25 14 13 27 27 C 1.49285 * 126.06746 * 175.35620 * 8 6 3 28 28 H 1.08005 * 119.99806 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00015 * 179.72614 * 1 2 3 30 30 H 1.08003 * 120.00250 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46816 * 59.99654 * 4 3 2 32 32 H 1.09002 * 109.46996 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.46800 * 299.99929 * 4 3 2 34 34 H 1.08995 * 109.47126 * 63.44226 * 5 3 2 35 35 H 1.09008 * 109.46933 * 183.44156 * 5 3 2 36 36 H 1.08999 * 109.47348 * 303.43726 * 5 3 2 37 37 H 1.09004 * 110.80604 * 272.59452 * 9 8 6 38 38 H 1.08998 * 110.80504 * 36.09829 * 9 8 6 39 39 H 1.09003 * 110.95654 * 326.17096 * 12 10 9 40 40 H 1.08994 * 110.95959 * 89.86669 * 12 10 9 41 41 H 1.08998 * 110.19082 * 144.50785 * 13 12 10 42 42 H 1.08998 * 110.19016 * 266.28681 * 13 12 10 43 43 H 0.96996 * 120.00233 * 90.27104 * 16 14 13 44 44 H 0.97003 * 119.99752 * 180.02562 * 20 19 17 45 45 H 1.08998 * 110.39789 * 292.41066 * 27 8 6 46 46 H 1.08994 * 110.39796 * 54.81781 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0772 2.4635 -0.1624 5 6 2.8173 1.4587 1.3226 6 6 3.0460 1.3179 -1.1427 7 8 2.9508 2.1552 -2.0147 8 7 4.0305 0.3989 -1.1952 9 6 4.3374 -0.6242 -0.1475 10 6 5.0097 -1.7218 -0.9523 11 1 4.2925 -2.2477 -1.5825 12 6 6.0351 -2.6781 -0.3767 13 6 6.8881 -3.0303 -1.6386 14 6 6.7193 -1.8356 -2.5979 15 1 7.6937 -1.4518 -2.9000 16 7 5.9411 -2.2450 -3.7696 17 6 6.5778 -2.7480 -4.8727 18 1 7.6537 -2.8425 -4.8790 19 6 5.8405 -3.1355 -5.9831 20 7 4.5294 -3.0200 -5.9756 21 14 6.7090 -3.8210 -7.4882 22 1 8.1736 -3.8486 -7.2448 23 1 6.2257 -5.1999 -7.7534 24 1 6.4180 -2.9601 -8.6626 25 6 5.9732 -0.8078 -1.8052 26 1 6.6690 -0.3289 -1.1164 27 6 5.0124 0.2253 -2.3062 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 -0.0045 30 1 1.8500 -0.9353 -0.0004 31 1 0.3666 2.4541 0.6641 32 1 1.6222 3.4074 -0.1619 33 1 0.5402 2.3540 -1.1046 34 1 3.5625 0.6681 1.4100 35 1 3.3127 2.4294 1.3478 36 1 2.1137 1.3883 2.1521 37 1 5.0169 -0.2188 0.6023 38 1 3.4214 -0.9904 0.3162 39 1 6.6448 -2.1862 0.3812 40 1 5.5537 -3.5674 0.0299 41 1 7.9349 -3.1557 -1.3621 42 1 6.5111 -3.9403 -2.1055 43 1 4.9749 -2.1599 -3.7640 44 1 4.0142 -3.2911 -6.7515 45 1 4.5093 -0.1285 -3.2060 46 1 5.5318 1.1628 -2.5041 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026329240.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:39 Heat of formation + Delta-G solvation = 18.141799 kcal Electronic energy + Delta-G solvation = -24761.938031 eV Core-core repulsion = 21459.975941 eV Total energy + Delta-G solvation = -3301.962090 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.79432 -39.14443 -36.28901 -35.26985 -33.28143 -31.04599 -30.80817 -29.49020 -28.48214 -27.30426 -25.51608 -24.42505 -23.31255 -22.54411 -20.09740 -20.02878 -18.91490 -18.26325 -17.42351 -16.70555 -16.18377 -15.61253 -14.97476 -14.76762 -14.39448 -14.33056 -14.05077 -13.58870 -13.57715 -12.96979 -12.82183 -12.71782 -12.49538 -12.26983 -12.12497 -11.80772 -11.69354 -11.44770 -11.30476 -11.17457 -10.99799 -10.84521 -10.69423 -10.60260 -10.45257 -10.25917 -10.05400 -9.91934 -9.63138 -9.56573 -9.18796 -8.92165 -8.43604 -6.96835 -5.76722 -3.05772 2.06999 2.87615 3.06370 3.43494 3.49200 3.51519 4.19668 4.44716 4.55781 4.59355 4.82702 4.92623 4.97174 5.06238 5.23124 5.32911 5.40830 5.44331 5.47367 5.56138 5.57470 5.63968 5.64826 5.69721 5.80933 5.84806 5.86143 5.95096 5.97885 6.03673 6.14800 6.20018 6.30134 6.31555 6.40071 6.45381 6.50687 6.56252 6.59741 6.67486 6.82967 7.06095 7.69850 7.71604 8.34426 8.41454 9.53003 10.09637 10.44283 11.45772 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.004353 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.699243 B = 6430.300778 C = 7062.798883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C -0.050 4.050 4 C -0.129 4.129 5 C -0.145 4.145 6 C 0.541 3.459 7 O -0.540 6.540 8 N -0.619 5.619 9 C 0.110 3.890 10 C -0.127 4.127 11 H 0.094 0.906 12 C -0.098 4.098 13 C -0.143 4.143 14 C 0.195 3.805 15 H 0.055 0.945 16 N -0.719 5.719 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.120 4.120 26 H 0.068 0.932 27 C 0.132 3.868 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.083 0.917 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 5.545 18.457 19.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.170 4.170 3 C -0.053 4.053 4 C -0.186 4.186 5 C -0.202 4.202 6 C 0.329 3.671 7 O -0.417 6.417 8 N -0.354 5.354 9 C -0.012 4.012 10 C -0.147 4.147 11 H 0.112 0.888 12 C -0.136 4.136 13 C -0.184 4.184 14 C 0.084 3.916 15 H 0.073 0.927 16 N -0.361 5.361 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.140 4.140 26 H 0.086 0.914 27 C 0.011 3.989 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.137 0.863 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.102 0.898 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.419 6.029 17.831 19.131 hybrid contribution 0.138 -0.537 -0.906 1.062 sum -3.280 5.492 16.925 18.094 Atomic orbital electron populations 1.24042 0.95901 1.02409 0.99612 1.22879 0.96102 0.96875 1.01183 1.19845 0.95075 0.95756 0.94669 1.21739 0.98098 0.96678 1.02119 1.22007 1.00516 1.02938 0.94779 1.20029 0.80382 0.79952 0.86782 1.90695 1.73296 1.37326 1.40422 1.49774 1.31457 1.33072 1.21082 1.22107 1.00138 0.88477 0.90451 1.22718 0.97839 0.95552 0.98552 0.88810 1.21825 0.96249 0.97824 0.97751 1.23561 0.98244 1.01669 0.94938 1.19699 0.94380 0.90194 0.87353 0.92734 1.42459 1.06019 1.75615 1.11996 1.19294 0.91615 1.33902 0.92279 0.91091 1.24731 0.95449 1.02246 0.98368 1.69668 1.04279 1.53803 1.30254 0.86155 0.78533 0.78340 0.83386 1.20569 1.21955 1.21911 1.22035 0.96809 0.95588 0.99543 0.91380 1.20935 0.89690 0.98274 0.89990 0.87702 0.88085 0.86342 0.91865 0.91828 0.91554 0.91095 0.91966 0.91448 0.91059 0.90012 0.92037 0.92085 0.92835 0.90418 0.78134 0.93556 0.89827 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 13.72 29.02 0.40 -1.43 16 2 C -0.15 -1.71 8.03 -36.03 -0.29 -2.00 16 3 C -0.05 -0.60 0.73 -156.81 -0.11 -0.71 16 4 C -0.13 -1.45 6.44 37.16 0.24 -1.21 16 5 C -0.15 -1.35 8.26 37.16 0.31 -1.04 16 6 C 0.54 8.73 6.58 -10.98 -0.07 8.65 16 7 O -0.54 -10.90 16.35 5.56 0.09 -10.81 16 8 N -0.62 -9.43 3.41 -171.41 -0.58 -10.02 16 9 C 0.11 1.31 4.61 -2.92 -0.01 1.29 16 10 C -0.13 -1.78 3.04 -89.31 -0.27 -2.05 16 11 H 0.09 1.58 7.74 -51.93 -0.40 1.18 16 12 C -0.10 -1.25 6.62 -25.67 -0.17 -1.42 16 13 C -0.14 -2.31 6.68 -24.34 -0.16 -2.47 16 14 C 0.19 3.63 3.38 -68.96 -0.23 3.40 16 15 H 0.05 1.04 8.09 -51.93 -0.42 0.62 16 16 N -0.72 -17.21 4.74 -54.43 -0.26 -17.47 16 17 C -0.24 -6.48 9.96 -15.06 -0.15 -6.63 16 18 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 21 Si 0.90 22.30 29.55 -169.99 -5.02 17.28 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 C -0.12 -1.89 2.32 -91.23 -0.21 -2.11 16 26 H 0.07 0.96 8.00 -51.93 -0.42 0.54 16 27 C 0.13 2.31 6.68 -4.12 -0.03 2.28 16 28 H 0.10 0.96 5.71 -52.48 -0.30 0.66 16 29 H 0.10 0.90 8.06 -52.48 -0.42 0.47 16 30 H 0.12 1.31 5.63 -52.48 -0.30 1.01 16 31 H 0.06 0.55 7.20 -51.93 -0.37 0.18 16 32 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 33 H 0.07 0.84 7.73 -51.93 -0.40 0.44 16 34 H 0.07 0.62 4.60 -51.93 -0.24 0.38 16 35 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.73 7.38 -51.93 -0.38 0.34 16 38 H 0.08 0.85 4.47 -51.93 -0.23 0.61 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.46 7.93 -51.93 -0.41 1.05 16 43 H 0.38 9.91 6.59 -40.82 -0.27 9.64 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.08 1.76 7.22 -51.93 -0.37 1.39 16 46 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -31.57 350.42 -8.08 -39.65 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -7.44 Total: 9.29 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.87 Total: -5.89 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.12 Total: -54.80 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.57 -8.08 -39.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026329240.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.789 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds