Wall clock time and date at job start Tue Mar 31 2020 07:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99909 * 2 1 4 4 C 1.53003 * 109.47200 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47088 * 240.00052 * 3 2 1 6 6 C 1.50703 * 109.47150 * 120.00269 * 3 2 1 7 7 O 1.21286 * 119.99864 * 354.16781 * 6 3 2 8 8 N 1.34777 * 120.00172 * 174.16648 * 6 3 2 9 9 C 1.46905 * 125.61338 * 354.42728 * 8 6 3 10 10 C 1.54209 * 107.63116 * 178.45987 * 9 8 6 11 11 H 1.09001 * 114.47878 * 214.84542 * 10 9 8 12 12 C 1.54977 * 108.03631 * 87.00703 * 10 9 8 13 13 C 1.54125 * 104.57130 * 214.53874 * 12 10 9 14 14 C 1.53868 * 106.54025 * 24.51080 * 13 12 10 15 15 H 1.09001 * 109.92417 * 238.72948 * 14 13 12 16 16 N 1.46503 * 109.92207 * 117.62408 * 14 13 12 17 17 C 1.36935 * 120.00045 * 86.45754 * 16 14 13 18 18 H 1.08000 * 119.99992 * 359.97438 * 17 16 14 19 19 C 1.38816 * 120.00168 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99544 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00150 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47438 * 59.99518 * 21 19 17 23 23 H 1.48497 * 109.47307 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47138 * 299.99673 * 21 19 17 25 25 C 1.53717 * 107.03038 * 358.28148 * 14 13 12 26 26 H 1.09003 * 112.96599 * 214.88408 * 25 14 13 27 27 C 1.47337 * 125.61882 * 174.39747 * 8 6 3 28 28 H 1.07995 * 120.00099 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99567 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.00099 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47119 * 183.19106 * 4 3 2 32 32 H 1.09002 * 109.46613 * 303.18848 * 4 3 2 33 33 H 1.08996 * 109.47219 * 63.18300 * 4 3 2 34 34 H 1.09000 * 109.47159 * 285.26489 * 5 3 2 35 35 H 1.08996 * 109.47218 * 45.26827 * 5 3 2 36 36 H 1.09006 * 109.46973 * 165.26335 * 5 3 2 37 37 H 1.08997 * 109.82523 * 58.93610 * 9 8 6 38 38 H 1.08992 * 109.89241 * 298.02111 * 9 8 6 39 39 H 1.09002 * 110.44326 * 95.76168 * 12 10 9 40 40 H 1.09003 * 110.42159 * 333.30237 * 12 10 9 41 41 H 1.09004 * 110.05663 * 265.22893 * 13 12 10 42 42 H 1.09006 * 110.05717 * 143.79423 * 13 12 10 43 43 H 0.96995 * 120.00104 * 266.45023 * 16 14 13 44 44 H 0.97007 * 119.99492 * 180.02562 * 20 19 17 45 45 H 1.09000 * 110.29720 * 85.00152 * 27 8 6 46 46 H 1.09002 * 110.30291 * 322.86616 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9300 1.3850 1.2304 7 8 2.8568 0.5230 2.0806 8 7 3.7861 2.4141 1.3862 9 6 4.0591 3.4582 0.3894 10 6 5.0692 4.4442 1.0103 11 1 4.9260 5.4835 0.7145 12 6 6.4963 3.9074 0.7328 13 6 7.3092 4.3038 1.9808 14 6 6.2991 4.4553 3.1316 15 1 6.3486 5.4652 3.5388 16 7 6.5906 3.4783 4.1836 17 6 7.5003 3.7772 5.1625 18 1 8.0031 4.7330 5.1589 19 6 7.7769 2.8512 6.1590 20 7 7.1645 1.6862 6.1632 21 14 9.0183 3.2586 7.4940 22 1 8.5682 4.4625 8.2379 23 1 9.1318 2.1121 8.4310 24 1 10.3414 3.5253 6.8749 25 6 4.9036 4.1910 2.5435 26 1 4.1266 4.8044 2.9998 27 6 4.6020 2.6778 2.5843 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.6130 3.4110 -0.0566 32 1 0.4053 2.3788 -0.8592 33 1 0.4811 2.4428 0.9180 34 1 3.8071 0.7327 -1.1283 35 1 2.3679 1.0708 -2.1197 36 1 3.2810 2.4130 -1.3897 37 1 3.1362 3.9821 0.1407 38 1 4.4838 3.0110 -0.5092 39 1 6.9134 4.3777 -0.1577 40 1 6.4795 2.8235 0.6187 41 1 7.8228 5.2496 1.8075 42 1 8.0327 3.5241 2.2189 43 1 6.1392 2.6198 4.1867 44 1 7.3576 1.0393 6.8598 45 1 5.5292 2.1061 2.5437 46 1 4.0422 2.4280 3.4856 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026329241.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:44 Heat of formation + Delta-G solvation = 8.644936 kcal Electronic energy + Delta-G solvation = -24788.716788 eV Core-core repulsion = 21486.342884 eV Total energy + Delta-G solvation = -3302.373905 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.78186 -38.93722 -36.24272 -35.13205 -33.25955 -31.19308 -30.92229 -28.89518 -28.40500 -27.64464 -25.48504 -24.65170 -23.29682 -22.59384 -20.21303 -19.68947 -18.85735 -18.35211 -17.23522 -16.68639 -16.10354 -15.71141 -15.07760 -14.92184 -14.69129 -14.19061 -14.01493 -13.45341 -13.30399 -13.09381 -12.94164 -12.68801 -12.54332 -12.19677 -12.14656 -11.89735 -11.80945 -11.55744 -11.34245 -11.21132 -10.87683 -10.76635 -10.65008 -10.47265 -10.37781 -10.23970 -10.13639 -9.85159 -9.67154 -9.58546 -9.29772 -8.87999 -8.35593 -6.94291 -5.73718 -3.03726 2.16896 2.81473 3.23669 3.45376 3.49782 3.51374 4.37249 4.47945 4.57031 4.60775 4.74534 4.83027 4.89474 5.04732 5.21876 5.24848 5.38786 5.40932 5.46820 5.52509 5.54990 5.57801 5.62414 5.66037 5.77689 5.81338 5.88120 5.95292 5.96774 5.98865 6.07490 6.08468 6.29043 6.38162 6.50430 6.53126 6.53817 6.58218 6.66272 6.69157 6.80842 7.11246 7.72245 7.75164 8.37007 8.44544 9.55058 10.12434 10.45738 11.48402 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.022222 B = 0.004178 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.684318 B = 6700.316096 C = 7560.164385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 C -0.052 4.052 4 C -0.146 4.146 5 C -0.149 4.149 6 C 0.535 3.465 7 O -0.532 6.532 8 N -0.612 5.612 9 C 0.097 3.903 10 C -0.105 4.105 11 H 0.102 0.898 12 C -0.115 4.115 13 C -0.146 4.146 14 C 0.183 3.817 15 H 0.053 0.947 16 N -0.725 5.725 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.105 4.105 26 H 0.087 0.913 27 C 0.117 3.883 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.082 0.918 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.675 4.244 -18.329 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.138 4.138 3 C -0.055 4.055 4 C -0.203 4.203 5 C -0.206 4.206 6 C 0.323 3.677 7 O -0.408 6.408 8 N -0.346 5.346 9 C -0.026 4.026 10 C -0.124 4.124 11 H 0.120 0.880 12 C -0.153 4.153 13 C -0.186 4.186 14 C 0.072 3.928 15 H 0.071 0.929 16 N -0.368 5.368 17 C -0.375 4.375 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.124 4.124 26 H 0.105 0.895 27 C -0.004 4.004 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.223 0.777 44 H 0.066 0.934 45 H 0.100 0.900 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.635 3.742 -17.716 20.999 hybrid contribution 0.651 -0.152 0.828 1.064 sum -9.984 3.591 -16.888 19.945 Atomic orbital electron populations 1.23916 0.95819 1.02088 1.01569 1.22499 0.95649 0.96667 0.98935 1.19835 0.95600 0.95772 0.94285 1.22023 0.98681 0.96846 1.02795 1.22107 0.99412 1.03304 0.95749 1.20061 0.79511 0.80462 0.87669 1.90738 1.67723 1.38042 1.44296 1.48470 1.42164 1.26122 1.17870 1.22398 0.98743 0.89344 0.92085 1.23216 0.95048 0.98357 0.95787 0.87985 1.22437 0.94085 1.00444 0.98341 1.22980 0.99511 1.00979 0.95169 1.20672 0.89163 0.94230 0.88758 0.92901 1.42710 1.49824 1.16658 1.27639 1.19196 1.15558 0.99995 1.02759 0.91232 1.24751 1.00335 0.96385 0.99284 1.69659 1.45454 1.07046 1.35677 0.86290 0.81192 0.76990 0.81819 1.21303 1.21731 1.21316 1.23202 0.99525 0.95266 0.94456 0.89488 1.22155 0.95256 0.95564 0.87465 0.87986 0.88332 0.86948 0.91305 0.91152 0.91825 0.91946 0.91492 0.90640 0.91561 0.90767 0.92395 0.91804 0.93053 0.90801 0.77718 0.93374 0.90038 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 13.70 29.01 0.40 -1.61 16 2 C -0.12 -1.42 7.95 -36.03 -0.29 -1.71 16 3 C -0.05 -0.60 0.72 -156.81 -0.11 -0.71 16 4 C -0.15 -1.37 6.96 37.16 0.26 -1.11 16 5 C -0.15 -1.37 7.61 37.16 0.28 -1.09 16 6 C 0.54 8.63 6.52 -10.98 -0.07 8.56 16 7 O -0.53 -11.12 16.35 5.55 0.09 -11.03 16 8 N -0.61 -9.20 3.32 -171.11 -0.57 -9.77 16 9 C 0.10 1.08 4.23 -3.19 -0.01 1.06 16 10 C -0.10 -1.26 4.25 -87.19 -0.37 -1.63 16 11 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 12 C -0.12 -1.53 5.59 -25.10 -0.14 -1.67 16 13 C -0.15 -2.45 6.56 -25.69 -0.17 -2.62 16 14 C 0.18 3.46 3.24 -67.10 -0.22 3.25 16 15 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 16 N -0.73 -17.85 4.79 -52.62 -0.25 -18.10 16 17 C -0.24 -6.71 9.95 -15.06 -0.15 -6.86 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 21 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C -0.10 -1.65 4.03 -87.78 -0.35 -2.01 16 26 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 27 C 0.12 2.12 4.38 -2.88 -0.01 2.11 16 28 H 0.10 0.91 5.68 -52.49 -0.30 0.61 16 29 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.07 0.58 5.25 -51.93 -0.27 0.31 16 32 H 0.07 0.52 7.29 -51.93 -0.38 0.14 16 33 H 0.06 0.66 7.69 -51.93 -0.40 0.26 16 34 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 35 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 36 H 0.07 0.59 4.93 -51.93 -0.26 0.33 16 37 H 0.07 0.60 5.50 -51.93 -0.29 0.32 16 38 H 0.07 0.73 5.57 -51.93 -0.29 0.44 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.93 7.28 -51.93 -0.38 0.55 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.46 7.91 -51.93 -0.41 1.05 16 43 H 0.39 10.20 5.33 -40.82 -0.22 9.98 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.08 1.69 6.30 -51.93 -0.33 1.36 16 46 H 0.08 1.63 8.08 -51.93 -0.42 1.22 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -32.67 345.37 -8.15 -40.82 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -7.27 Total: 9.65 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -1.05 Total: -6.45 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.10 Total: -55.68 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.67 -8.15 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026329241.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.462 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds