Wall clock time and date at job start Tue Mar 31 2020 07:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00179 * 2 1 4 4 C 1.53005 * 109.47006 * 0.02562 * 3 2 1 5 5 C 1.52992 * 109.47122 * 240.00107 * 3 2 1 6 6 C 1.50705 * 109.46813 * 120.00258 * 3 2 1 7 7 O 1.21280 * 119.99943 * 114.37586 * 6 3 2 8 8 N 1.34778 * 119.99827 * 294.36816 * 6 3 2 9 9 C 1.48335 * 128.19937 * 4.79096 * 8 6 3 10 10 C 1.54834 * 104.12724 * 138.23905 * 9 8 6 11 11 H 1.09000 * 112.85530 * 263.44608 * 10 9 8 12 12 C 1.56369 * 108.82466 * 137.54874 * 10 9 8 13 13 C 1.54830 * 104.40011 * 223.95189 * 12 10 9 14 14 C 1.54845 * 102.73067 * 38.70202 * 13 12 10 15 15 H 1.08998 * 110.45743 * 80.49044 * 14 13 12 16 16 N 1.46499 * 110.56341 * 203.00208 * 14 13 12 17 17 C 1.36939 * 120.00312 * 269.98639 * 16 14 13 18 18 H 1.08004 * 119.99286 * 0.02562 * 17 16 14 19 19 C 1.38808 * 120.00344 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00181 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99781 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47157 * 90.00051 * 21 19 17 23 23 H 1.48498 * 109.46716 * 209.99801 * 21 19 17 24 24 H 1.48496 * 109.47350 * 329.99737 * 21 19 17 25 25 C 1.54141 * 104.34425 * 321.77183 * 14 13 12 26 26 H 1.09008 * 111.89355 * 260.14985 * 25 14 13 27 27 C 1.48340 * 128.19555 * 185.12049 * 8 6 3 28 28 H 1.07995 * 120.00179 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99941 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99802 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.46952 * 294.51301 * 4 3 2 32 32 H 1.09005 * 109.46667 * 174.51295 * 4 3 2 33 33 H 1.08997 * 109.47064 * 54.51641 * 4 3 2 34 34 H 1.09001 * 109.47099 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.47442 * 299.99748 * 5 3 2 36 36 H 1.09002 * 109.47392 * 60.00091 * 5 3 2 37 37 H 1.08996 * 110.47041 * 256.97785 * 9 8 6 38 38 H 1.09003 * 110.46428 * 19.56720 * 9 8 6 39 39 H 1.09003 * 110.03101 * 105.42047 * 12 10 9 40 40 H 1.09002 * 110.94202 * 342.94383 * 12 10 9 41 41 H 1.08995 * 110.76097 * 280.39284 * 13 12 10 42 42 H 1.09001 * 110.92333 * 157.08567 * 13 12 10 43 43 H 0.97005 * 119.99743 * 89.99178 * 16 14 13 44 44 H 0.96998 * 120.00277 * 180.02562 * 20 19 17 45 45 H 1.09006 * 110.46042 * 340.43277 * 27 8 6 46 46 H 1.09000 * 110.47203 * 102.89372 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9300 1.3848 1.2305 7 8 4.1379 1.3926 1.1221 8 7 2.3625 1.4475 2.4514 9 6 0.9238 1.3532 2.8001 10 6 0.8991 0.4595 4.0642 11 1 0.6919 -0.5867 3.8391 12 6 -0.1104 1.0672 5.0921 13 6 0.6266 0.9835 6.4512 14 6 2.0861 1.3334 6.0700 15 1 2.2076 2.4127 5.9787 16 7 3.0201 0.7962 7.0626 17 6 3.3773 1.5529 8.1466 18 1 2.9700 2.5456 8.2699 19 6 4.2626 1.0442 9.0869 20 7 4.6055 1.7713 10.1290 21 14 4.9675 -0.6725 8.8731 22 1 6.2284 -0.5962 8.0924 23 1 5.2461 -1.2627 10.2069 24 1 3.9884 -1.5232 8.1501 25 6 2.2986 0.6498 4.7049 26 1 2.8350 -0.2942 4.8021 27 6 3.0282 1.6337 3.7638 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 0.5088 2.4673 -0.9341 32 1 1.6109 3.4089 0.0989 33 1 0.3801 2.3564 0.8377 34 1 3.4885 2.3299 -1.2490 35 1 3.6515 0.5576 -1.2492 36 1 2.3165 1.3284 -2.1392 37 1 0.5197 2.3410 3.0214 38 1 0.3652 0.8846 1.9898 39 1 -1.0228 0.4713 5.1163 40 1 -0.3400 2.1040 4.8464 41 1 0.5657 -0.0241 6.8623 42 1 0.2264 1.7117 7.1566 43 1 3.3856 -0.0955 6.9519 44 1 5.2245 1.4159 10.7858 45 1 4.0861 1.3806 3.6938 46 1 2.9048 2.6593 4.1117 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026329242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:49 Heat of formation + Delta-G solvation = 2.817315 kcal Electronic energy + Delta-G solvation = -24595.348612 eV Core-core repulsion = 21292.722003 eV Total energy + Delta-G solvation = -3302.626609 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72072 -38.87993 -36.57356 -35.27175 -33.32312 -31.19966 -31.09088 -29.64256 -28.64471 -27.55613 -25.34017 -24.79116 -22.86057 -22.39637 -20.69362 -19.94394 -19.27229 -18.33312 -17.45675 -17.23953 -16.04718 -15.77660 -15.42697 -15.05556 -14.62342 -14.18449 -14.06122 -13.69255 -13.42811 -12.94926 -12.71029 -12.67774 -12.63752 -12.47516 -12.30657 -12.12605 -11.89561 -11.82615 -11.47568 -11.35688 -11.02505 -10.84301 -10.82707 -10.66416 -10.48001 -10.36316 -10.32273 -10.11756 -9.96942 -9.58846 -9.29645 -8.90616 -8.67766 -7.26497 -5.77752 -3.13296 1.85557 2.63338 2.96610 3.37796 3.41116 3.46001 4.28753 4.40676 4.53049 4.57013 4.59130 4.67023 4.84175 4.93098 5.01875 5.21349 5.25863 5.27942 5.36877 5.44799 5.49169 5.51038 5.53904 5.57744 5.61870 5.64398 5.77419 5.84249 5.85290 5.89054 5.96888 5.99463 6.07681 6.13870 6.22922 6.24087 6.27600 6.38319 6.41695 6.56719 6.72433 6.91512 7.61109 7.98352 8.16140 8.41622 9.19721 9.92542 10.11791 11.40581 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.023380 B = 0.004066 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.328501 B = 6885.455643 C = 7421.195507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.140 4.140 3 C -0.052 4.052 4 C -0.151 4.151 5 C -0.122 4.122 6 C 0.545 3.455 7 O -0.541 6.541 8 N -0.619 5.619 9 C 0.094 3.906 10 C -0.101 4.101 11 H 0.086 0.914 12 C -0.115 4.115 13 C -0.142 4.142 14 C 0.189 3.811 15 H 0.066 0.934 16 N -0.745 5.745 17 C -0.244 4.244 18 H 0.090 0.910 19 C 0.006 3.994 20 N -0.934 5.934 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.111 4.111 26 H 0.083 0.917 27 C 0.111 3.889 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.081 0.919 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.726 -1.929 -22.032 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.158 4.158 3 C -0.055 4.055 4 C -0.208 4.208 5 C -0.180 4.180 6 C 0.333 3.667 7 O -0.418 6.418 8 N -0.352 5.352 9 C -0.028 4.028 10 C -0.121 4.121 11 H 0.104 0.896 12 C -0.153 4.153 13 C -0.183 4.183 14 C 0.079 3.921 15 H 0.083 0.917 16 N -0.386 5.386 17 C -0.374 4.374 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.713 3.287 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.132 4.132 26 H 0.101 0.899 27 C -0.011 4.011 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.945 -1.718 -22.018 25.108 hybrid contribution 0.548 -1.340 0.134 1.454 sum -11.397 -3.058 -21.884 24.862 Atomic orbital electron populations 1.24037 0.95761 1.02611 1.00184 1.22731 0.95907 0.96946 1.00254 1.19884 0.96095 0.95237 0.94295 1.22115 0.98678 0.96953 1.03045 1.21602 0.98713 1.03396 0.94264 1.19997 0.88043 0.75765 0.82890 1.90707 1.14641 1.50596 1.85867 1.49175 1.08878 1.71298 1.05849 1.23069 0.82125 0.99907 0.97727 1.23185 0.95752 0.99027 0.94127 0.89612 1.22770 0.97058 1.00027 0.95488 1.23166 0.97912 1.01913 0.95303 1.21099 0.88614 0.96520 0.85864 0.91651 1.42813 1.53228 1.16840 1.25747 1.19073 1.21519 0.98839 0.97981 0.89178 1.24657 0.99639 0.97724 0.96951 1.69695 1.38199 1.36977 1.13247 0.86581 0.79365 0.85791 0.76971 1.21039 1.21756 1.20367 1.23084 0.95004 0.99127 0.95970 0.89865 1.22644 0.98395 0.99358 0.80675 0.87919 0.87479 0.86887 0.91220 0.91825 0.91065 0.91734 0.91657 0.91948 0.90769 0.89502 0.92230 0.91536 0.91742 0.91701 0.80586 0.93051 0.90064 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.28 11.76 29.01 0.34 -0.94 16 2 C -0.14 -1.22 7.79 -36.03 -0.28 -1.50 16 3 C -0.05 -0.52 0.73 -156.81 -0.11 -0.64 16 4 C -0.15 -1.20 6.83 37.16 0.25 -0.94 16 5 C -0.12 -1.19 7.76 37.15 0.29 -0.90 16 6 C 0.54 7.70 6.61 -10.98 -0.07 7.63 16 7 O -0.54 -9.82 16.25 5.56 0.09 -9.73 16 8 N -0.62 -8.22 3.27 -168.66 -0.55 -8.78 16 9 C 0.09 0.98 4.63 -2.06 -0.01 0.97 16 10 C -0.10 -1.19 4.09 -86.74 -0.36 -1.55 16 11 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.12 -1.33 6.41 -23.96 -0.15 -1.49 16 13 C -0.14 -2.25 6.58 -24.79 -0.16 -2.41 16 14 C 0.19 3.42 3.05 -66.36 -0.20 3.21 16 15 H 0.07 1.22 7.14 -51.93 -0.37 0.85 16 16 N -0.74 -17.13 5.01 -51.91 -0.26 -17.39 16 17 C -0.24 -6.76 10.44 -15.06 -0.16 -6.92 16 18 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 19 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 20 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 21 Si 0.88 22.18 27.74 -169.99 -4.71 17.46 16 22 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 25 C -0.11 -1.69 3.59 -88.15 -0.32 -2.01 16 26 H 0.08 1.36 7.79 -51.92 -0.40 0.96 16 27 C 0.11 1.70 6.58 -2.26 -0.01 1.68 16 28 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 29 H 0.11 0.62 5.65 -52.48 -0.30 0.32 16 30 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.07 0.43 7.81 -51.93 -0.41 0.03 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.52 4.38 -51.93 -0.23 0.29 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.70 7.15 -51.93 -0.37 0.33 16 38 H 0.09 0.75 3.55 -51.93 -0.18 0.56 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.70 7.26 -51.93 -0.38 0.32 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.36 8.29 5.46 -40.82 -0.22 8.07 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 45 H 0.08 1.41 7.85 -51.93 -0.41 1.00 16 46 H 0.08 1.17 7.22 -51.93 -0.37 0.79 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -32.71 348.11 -7.92 -40.64 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.46 Total: 6.72 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.05 Total: -5.72 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.04 Total: -54.62 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.71 -7.92 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026329242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.456 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds