Wall clock time and date at job start Tue Mar 31 2020 06:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.46995 * 2 1 4 4 C 1.50700 * 115.55101 * 294.63804 * 3 2 1 5 5 O 1.21287 * 119.99683 * 90.66399 * 4 3 2 6 6 N 1.34771 * 120.00182 * 270.39361 * 4 3 2 7 7 C 1.49625 * 126.07591 * 4.74660 * 6 4 3 8 8 C 1.51753 * 102.38646 * 154.30184 * 7 6 4 9 9 H 1.09008 * 111.73488 * 288.24527 * 8 7 6 10 10 C 1.51860 * 122.16980 * 151.26446 * 8 7 6 11 11 C 1.56343 * 100.95927 * 207.11836 * 10 8 7 12 12 C 1.55995 * 105.77033 * 26.27941 * 11 10 8 13 13 H 1.09007 * 110.64549 * 248.27544 * 12 11 10 14 14 N 1.46496 * 110.52971 * 125.58559 * 12 11 10 15 15 C 1.36940 * 120.00002 * 90.43010 * 14 12 11 16 16 H 1.07999 * 120.00151 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00142 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99709 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00227 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47166 * 120.00084 * 19 17 15 22 22 H 1.48498 * 109.47577 * 240.00302 * 19 17 15 23 23 C 1.49710 * 103.98969 * 6.95883 * 12 11 10 24 24 H 1.09004 * 108.54698 * 76.80218 * 23 12 11 25 25 C 1.49290 * 126.07433 * 185.04679 * 6 4 3 26 26 C 1.53001 * 117.51912 * 80.34471 * 3 2 1 27 27 C 1.52999 * 60.00164 * 107.48224 * 26 3 2 28 28 H 1.09002 * 109.47174 * 175.72332 * 1 2 3 29 29 H 1.08996 * 109.47180 * 295.72269 * 1 2 3 30 30 H 1.08995 * 109.46801 * 55.72481 * 1 2 3 31 31 H 1.09002 * 109.46934 * 239.99197 * 2 1 3 32 32 H 1.09003 * 109.47077 * 119.99818 * 2 1 3 33 33 H 1.09009 * 110.80090 * 272.63462 * 7 6 4 34 34 H 1.08999 * 110.80380 * 36.12579 * 7 6 4 35 35 H 1.08994 * 110.63043 * 89.58688 * 10 8 7 36 36 H 1.08994 * 112.11625 * 325.28609 * 10 8 7 37 37 H 1.08995 * 110.18989 * 267.20229 * 11 10 8 38 38 H 1.08998 * 110.25036 * 145.38780 * 11 10 8 39 39 H 0.97001 * 120.00277 * 270.43523 * 14 12 11 40 40 H 0.97007 * 119.99741 * 179.97438 * 18 17 15 41 41 H 1.09000 * 110.39715 * 292.38317 * 25 6 4 42 42 H 1.09006 * 110.38960 * 54.66660 * 25 6 4 43 43 H 1.09004 * 117.49724 * 214.96743 * 26 3 2 44 44 H 1.08993 * 117.50134 * 359.97438 * 26 3 2 45 45 H 1.08998 * 117.49477 * 252.51142 * 27 26 3 46 46 H 1.09003 * 117.50615 * 107.48982 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.7222 2.2442 -1.2358 5 8 0.7000 2.8946 -1.2905 6 7 2.5765 2.2428 -2.2782 7 6 3.8220 1.4218 -2.3955 8 6 3.9931 1.3030 -3.8986 9 1 3.2473 0.6409 -4.3388 10 6 5.3569 1.1420 -4.5469 11 6 5.0933 1.7707 -5.9539 12 6 3.9274 2.7872 -5.7523 13 1 3.0250 2.4422 -6.2573 14 7 4.3122 4.1138 -6.2405 15 6 4.0609 4.4645 -7.5402 16 1 3.5786 3.7633 -8.2052 17 6 4.4260 5.7212 -8.0030 18 7 5.0142 6.5756 -7.1928 19 14 4.0838 6.1994 -9.7760 20 1 3.4193 5.0696 -10.4740 21 1 3.1961 7.3896 -9.8052 22 1 5.3634 6.5194 -10.4582 23 6 3.7219 2.8129 -4.2696 24 1 4.5149 3.4106 -3.8200 25 6 2.4518 3.0647 -3.5182 26 6 2.0610 2.1848 1.3377 27 6 3.3719 1.7209 0.6995 28 1 -0.3633 -1.0248 -0.0766 29 1 -0.3633 0.4460 0.9258 30 1 -0.3633 0.5787 -0.8492 31 1 1.8933 -0.5140 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 4.6702 1.9390 -1.9467 34 1 3.6825 0.4400 -1.9432 35 1 5.6187 0.0875 -4.6339 36 1 6.1323 1.6915 -4.0133 37 1 4.7992 0.9966 -6.6627 38 1 5.9851 2.2867 -6.3096 39 1 4.7451 4.7437 -5.6433 40 1 5.2697 7.4537 -7.5163 41 1 1.5925 2.7394 -4.1047 42 1 2.3606 4.1212 -3.2659 43 1 1.8450 3.2531 1.3238 44 1 1.7111 1.6457 2.2180 45 1 3.8846 0.8765 1.1601 46 1 4.0184 2.4839 0.2658 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026354908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:09 Heat of formation + Delta-G solvation = 10.792006 kcal Electronic energy + Delta-G solvation = -24248.365151 eV Core-core repulsion = 20946.084350 eV Total energy + Delta-G solvation = -3302.280801 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72790 -39.26249 -36.87518 -35.28334 -33.36772 -32.12083 -30.90875 -29.64607 -28.41184 -25.66128 -24.77512 -23.56913 -23.02704 -22.59446 -21.52765 -20.19205 -19.15798 -18.47158 -17.11887 -16.56816 -16.37871 -15.87054 -15.12500 -14.83855 -14.60818 -14.11980 -13.92436 -13.76855 -13.73204 -13.15615 -12.88342 -12.80421 -12.53860 -12.32694 -11.96009 -11.75908 -11.72916 -11.56021 -11.43280 -11.35334 -10.95478 -10.81759 -10.79740 -10.63355 -10.49118 -10.22326 -10.14921 -10.11077 -9.78470 -9.63658 -9.51306 -8.92571 -8.57628 -6.98405 -5.78533 -3.07574 2.65985 2.85476 3.42656 3.45651 3.48660 3.50647 4.13416 4.32737 4.45707 4.57265 4.61147 4.68976 4.93592 5.04864 5.14301 5.22847 5.27822 5.32438 5.35527 5.38514 5.44116 5.54513 5.57657 5.63365 5.69185 5.75652 5.78618 5.86660 5.87897 5.89399 5.91259 6.02543 6.03976 6.13474 6.14259 6.22984 6.33338 6.40005 6.49751 6.63000 6.77911 7.04385 7.58233 7.70053 8.23265 8.39713 9.51236 10.07722 10.42199 11.44003 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.003527 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.950700 B = 7936.067012 C = 8307.099190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C -0.149 4.149 4 C 0.564 3.436 5 O -0.538 6.538 6 N -0.620 5.620 7 C 0.120 3.880 8 C -0.127 4.127 9 H 0.088 0.912 10 C -0.100 4.100 11 C -0.144 4.144 12 C 0.198 3.802 13 H 0.056 0.944 14 N -0.720 5.720 15 C -0.240 4.240 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.120 4.120 24 H 0.075 0.925 25 C 0.134 3.866 26 C -0.146 4.146 27 C -0.165 4.165 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -15.550 16.005 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.113 4.113 3 C -0.152 4.152 4 C 0.352 3.648 5 O -0.415 6.415 6 N -0.355 5.355 7 C -0.002 4.002 8 C -0.146 4.146 9 H 0.107 0.893 10 C -0.139 4.139 11 C -0.185 4.185 12 C 0.087 3.913 13 H 0.074 0.926 14 N -0.360 5.360 15 C -0.371 4.371 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.140 4.140 24 H 0.093 0.907 25 C 0.013 3.987 26 C -0.183 4.183 27 C -0.202 4.202 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.380 -15.144 15.850 22.051 hybrid contribution 0.104 0.597 -0.824 1.023 sum -2.276 -14.547 15.027 21.038 Atomic orbital electron populations 1.21732 0.94877 1.01397 1.02864 1.20971 0.96612 0.91302 1.02446 1.21414 1.03472 0.97530 0.92809 1.19146 0.82377 0.81022 0.82289 1.90704 1.25497 1.43904 1.81399 1.49857 1.24552 1.42957 1.18104 1.21843 0.86778 0.94956 0.96576 1.22736 0.99554 0.98422 0.93935 0.89321 1.21920 0.94565 1.00146 0.97231 1.23809 1.01384 0.98661 0.94689 1.19976 0.94960 0.87368 0.88991 0.92635 1.42510 1.71555 1.11106 1.10873 1.19300 1.32393 0.97779 0.87635 0.91079 1.24742 1.01419 0.96700 0.98005 1.69671 1.46479 1.07362 1.34530 0.86140 0.77365 0.78145 0.84675 1.20537 1.21876 1.21900 1.22100 0.97156 0.95931 0.98812 0.90652 1.20980 0.98131 0.95292 0.84315 1.22975 1.00119 1.01012 0.94220 1.23153 0.90308 1.03770 1.02957 0.92664 0.92479 0.92071 0.91318 0.90992 0.91023 0.90683 0.92257 0.91343 0.92679 0.90795 0.78187 0.93553 0.91338 0.90795 0.88314 0.87949 0.87909 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.84 37.16 0.37 -1.10 16 2 C -0.08 -0.67 5.81 -26.73 -0.16 -0.83 16 3 C -0.15 -1.59 1.15 -155.66 -0.18 -1.77 16 4 C 0.56 8.32 6.42 -10.99 -0.07 8.25 16 5 O -0.54 -10.08 17.05 5.55 0.09 -9.99 16 6 N -0.62 -8.67 3.42 -171.43 -0.59 -9.26 16 7 C 0.12 1.33 5.59 -2.93 -0.02 1.31 16 8 C -0.13 -1.57 3.15 -89.18 -0.28 -1.85 16 9 H 0.09 1.11 8.14 -51.92 -0.42 0.68 16 10 C -0.10 -1.24 6.61 -25.51 -0.17 -1.41 16 11 C -0.14 -2.34 6.72 -23.33 -0.16 -2.49 16 12 C 0.20 3.72 3.42 -67.96 -0.23 3.49 16 13 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 14 N -0.72 -17.44 5.10 -53.45 -0.27 -17.71 16 15 C -0.24 -6.52 9.96 -15.06 -0.15 -6.67 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 19 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 C -0.12 -1.90 2.23 -91.23 -0.20 -2.10 16 24 H 0.08 1.26 7.76 -51.93 -0.40 0.86 16 25 C 0.13 2.16 6.83 -4.12 -0.03 2.13 16 26 C -0.15 -1.39 9.95 -26.73 -0.27 -1.65 16 27 C -0.16 -1.41 8.99 -26.73 -0.24 -1.65 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.75 7.25 -51.93 -0.38 0.38 16 31 H 0.07 0.59 7.71 -51.93 -0.40 0.19 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.07 0.75 8.03 -51.92 -0.42 0.33 16 34 H 0.07 0.69 7.41 -51.93 -0.38 0.30 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.37 7.98 -51.93 -0.41 0.95 16 39 H 0.38 9.95 7.68 -40.82 -0.31 9.64 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.92 7.98 -51.93 -0.41 0.50 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -31.37 365.33 -9.60 -40.96 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -8.16 Total: 7.21 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.88 Total: -6.80 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.13 Total: -54.13 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.37 -9.60 -40.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026354908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.754 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds