Wall clock time and date at job start Tue Mar 31 2020 06:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47169 * 2 1 4 4 C 1.50704 * 115.55333 * 304.54528 * 3 2 1 5 5 O 1.21279 * 120.00105 * 113.07780 * 4 3 2 6 6 N 1.34773 * 119.99903 * 293.08274 * 4 3 2 7 7 C 1.46907 * 125.61714 * 354.98255 * 6 4 3 8 8 C 1.54209 * 107.63531 * 178.50653 * 7 6 4 9 9 H 1.09008 * 114.47517 * 214.85070 * 8 7 6 10 10 C 1.54836 * 108.04919 * 87.00791 * 8 7 6 11 11 C 1.54137 * 104.63215 * 214.54466 * 10 8 7 12 12 C 1.53863 * 106.49464 * 24.49978 * 11 10 8 13 13 H 1.08999 * 109.92481 * 238.75540 * 12 11 10 14 14 N 1.46496 * 109.92329 * 117.64786 * 12 11 10 15 15 C 1.36933 * 120.00220 * 86.45107 * 14 12 11 16 16 H 1.08005 * 120.00006 * 0.02562 * 15 14 12 17 17 C 1.38809 * 120.00342 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00226 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00092 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47262 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47010 * 60.00053 * 19 17 15 22 22 H 1.48500 * 109.47296 * 299.99953 * 19 17 15 23 23 C 1.53716 * 107.02938 * 358.30455 * 12 11 10 24 24 H 1.08996 * 112.96434 * 214.88133 * 23 12 11 25 25 C 1.47340 * 125.61899 * 175.01269 * 6 4 3 26 26 C 1.53002 * 117.49877 * 90.21467 * 3 2 1 27 27 C 1.52997 * 117.50240 * 158.87243 * 3 2 1 28 28 H 1.09000 * 109.47270 * 65.37943 * 1 2 3 29 29 H 1.09004 * 109.47193 * 185.37620 * 1 2 3 30 30 H 1.08994 * 109.46976 * 305.37224 * 1 2 3 31 31 H 1.09002 * 109.47274 * 240.00176 * 2 1 3 32 32 H 1.09001 * 109.46954 * 120.00211 * 2 1 3 33 33 H 1.09003 * 109.82181 * 58.98097 * 7 6 4 34 34 H 1.09000 * 109.82544 * 298.03485 * 7 6 4 35 35 H 1.09000 * 110.40325 * 95.75725 * 10 8 7 36 36 H 1.08999 * 110.50385 * 333.38506 * 10 8 7 37 37 H 1.08997 * 110.05011 * 265.23609 * 11 10 8 38 38 H 1.09000 * 110.04790 * 143.75840 * 11 10 8 39 39 H 0.97004 * 119.99884 * 266.45095 * 14 12 11 40 40 H 0.97007 * 119.99519 * 0.02562 * 18 17 15 41 41 H 1.08998 * 110.30078 * 84.96048 * 25 6 4 42 42 H 1.08999 * 110.38041 * 322.85880 * 25 6 4 43 43 H 1.08999 * 117.50000 * 215.00587 * 26 3 2 44 44 H 1.09005 * 117.49776 * 0.02562 * 26 3 2 45 45 H 1.09008 * 117.49460 * 359.97438 * 27 3 2 46 46 H 1.08997 * 117.50153 * 144.99526 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5298 2.3123 -1.1199 5 8 0.7929 3.2442 -0.8763 6 7 1.8923 2.0545 -2.3921 7 6 2.8552 1.0293 -2.8163 8 6 2.9293 1.0666 -4.3561 9 1 3.0798 0.0939 -4.8247 10 6 3.9865 2.1232 -4.7601 11 6 3.4407 2.7423 -6.0618 12 6 1.9163 2.5347 -6.0386 13 1 1.6065 1.9591 -6.9108 14 7 1.2359 3.8321 -6.0297 15 6 0.9650 4.4713 -7.2101 16 1 1.2527 4.0187 -8.1476 17 6 0.3208 5.7008 -7.2017 18 7 -0.0302 6.2521 -6.0592 19 14 -0.0493 6.5723 -8.8119 20 1 -0.7380 7.8578 -8.5321 21 1 -0.9252 5.7141 -9.6493 22 1 1.2207 6.8377 -9.5345 23 6 1.5868 1.7617 -4.7515 24 1 0.7599 1.0625 -4.8752 25 6 1.3888 2.7550 -3.5865 26 6 2.2803 2.1068 1.3571 27 6 3.4689 1.6866 0.4892 28 1 -0.3634 0.4281 -0.9342 29 1 -0.3634 -1.0232 0.0963 30 1 -0.3633 0.5949 0.8379 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.5182 0.0466 -2.4862 34 1 3.8362 1.2460 -2.3936 35 1 4.9501 1.6468 -4.9407 36 1 4.0794 2.8855 -3.9865 37 1 3.8735 2.2379 -6.9257 38 1 3.6725 3.8068 -6.0952 39 1 0.9772 4.2383 -5.1877 40 1 0.1617 5.7993 -5.2231 41 1 1.9643 3.6638 -3.7627 42 1 0.3319 2.9942 -3.4690 43 1 2.0693 3.1729 1.4400 44 1 2.0754 1.5160 2.2500 45 1 4.0456 0.8195 0.8114 46 1 4.0400 2.4762 0.0009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026354911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:22 Heat of formation + Delta-G solvation = 1.417822 kcal Electronic energy + Delta-G solvation = -24814.992459 eV Core-core repulsion = 21512.305163 eV Total energy + Delta-G solvation = -3302.687296 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73744 -39.15852 -36.77226 -35.23280 -33.48712 -32.14859 -30.92643 -29.33986 -28.27718 -25.76955 -24.54747 -23.76251 -23.23347 -22.60880 -21.52205 -19.82121 -19.02597 -18.64876 -17.29258 -16.79286 -16.09101 -15.85961 -15.51421 -14.85206 -14.51732 -14.07199 -13.92934 -13.68221 -13.46206 -13.23626 -13.09968 -12.70691 -12.62352 -12.43684 -12.23962 -11.81346 -11.68260 -11.57704 -11.39114 -11.16102 -10.72660 -10.64220 -10.59624 -10.54205 -10.48173 -10.33489 -10.14326 -9.99757 -9.89717 -9.55769 -9.13658 -8.89202 -8.45591 -7.01906 -6.06966 -3.08036 2.67383 3.01468 3.53093 3.54257 3.56728 3.74631 4.30629 4.42436 4.51064 4.60258 4.65025 4.72315 4.81003 4.93429 5.11923 5.20020 5.34733 5.37249 5.39514 5.42143 5.44781 5.47615 5.64090 5.65184 5.69141 5.71183 5.78575 5.83195 5.86006 5.89811 5.92238 5.94655 5.99740 6.12866 6.16802 6.28148 6.37788 6.45677 6.48250 6.58268 6.73723 7.02399 7.66781 7.83689 8.30238 8.77695 9.24478 10.10792 10.24900 11.40673 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.021763 B = 0.004215 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.262624 B = 6640.744897 C = 7228.548429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.079 4.079 3 C -0.152 4.152 4 C 0.562 3.438 5 O -0.534 6.534 6 N -0.609 5.609 7 C 0.109 3.891 8 C -0.103 4.103 9 H 0.103 0.897 10 C -0.115 4.115 11 C -0.145 4.145 12 C 0.188 3.812 13 H 0.054 0.946 14 N -0.737 5.737 15 C -0.334 4.334 16 H 0.064 0.936 17 C -0.044 4.044 18 N -0.942 5.942 19 Si 1.079 2.921 20 H -0.285 1.285 21 H -0.296 1.296 22 H -0.296 1.296 23 C -0.106 4.106 24 H 0.088 0.912 25 C 0.117 3.883 26 C -0.145 4.145 27 C -0.161 4.161 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.369 0.631 40 H 0.255 0.745 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.686 -16.347 11.452 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.155 4.155 4 C 0.350 3.650 5 O -0.410 6.410 6 N -0.343 5.343 7 C -0.014 4.014 8 C -0.122 4.122 9 H 0.121 0.879 10 C -0.153 4.153 11 C -0.185 4.185 12 C 0.078 3.922 13 H 0.072 0.928 14 N -0.381 5.381 15 C -0.465 4.465 16 H 0.082 0.918 17 C -0.242 4.242 18 N -0.587 5.587 19 Si 0.910 3.090 20 H -0.211 1.211 21 H -0.223 1.223 22 H -0.223 1.223 23 C -0.126 4.126 24 H 0.106 0.894 25 C -0.005 4.005 26 C -0.182 4.182 27 C -0.198 4.198 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.205 0.795 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.608 -14.500 10.761 19.594 hybrid contribution 0.726 -1.303 0.786 1.686 sum 8.334 -15.803 11.548 21.273 Atomic orbital electron populations 1.21735 0.94979 1.01557 1.02660 1.21059 0.96521 0.91569 1.02520 1.21464 1.01042 0.97180 0.95841 1.19102 0.80383 0.83925 0.81577 1.90733 1.36992 1.30429 1.82890 1.48423 1.43462 1.36818 1.05607 1.22029 0.92556 0.91445 0.95372 1.23167 0.96384 0.99539 0.93137 0.87877 1.22414 0.97066 0.97108 0.98716 1.22957 0.98615 1.01464 0.95514 1.20604 0.90494 0.87400 0.93736 0.92782 1.42714 1.70192 1.19011 1.06167 1.20037 1.36496 1.03814 0.86180 0.91765 1.25760 0.98664 0.95226 1.04529 1.70882 1.49636 1.40845 0.97296 0.83253 0.75892 0.76218 0.73610 1.21063 1.22302 1.22316 1.23221 0.96798 0.96817 0.95738 0.89397 1.22137 1.00466 0.95588 0.82320 1.23016 1.00665 1.02018 0.92542 1.23076 0.89844 1.03672 1.03258 0.92645 0.92417 0.92238 0.91020 0.91021 0.91737 0.91501 0.92287 0.91911 0.92916 0.90916 0.79511 0.93366 0.90398 0.90537 0.87895 0.87997 0.87908 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.57 37.16 0.36 -1.23 16 2 C -0.08 -0.74 5.77 -26.74 -0.15 -0.89 16 3 C -0.15 -1.76 1.30 -155.66 -0.20 -1.96 16 4 C 0.56 9.03 6.17 -10.99 -0.07 8.97 16 5 O -0.53 -11.01 17.03 5.56 0.09 -10.92 16 6 N -0.61 -9.22 3.32 -171.10 -0.57 -9.79 16 7 C 0.11 1.26 5.61 -3.19 -0.02 1.24 16 8 C -0.10 -1.26 4.25 -87.27 -0.37 -1.63 16 9 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 10 C -0.12 -1.56 5.57 -25.17 -0.14 -1.70 16 11 C -0.14 -2.48 6.56 -25.69 -0.17 -2.65 16 12 C 0.19 3.63 3.24 -67.11 -0.22 3.42 16 13 H 0.05 1.07 8.09 -51.93 -0.42 0.65 16 14 N -0.74 -18.22 4.79 -52.63 -0.25 -18.48 16 15 C -0.33 -9.36 9.95 -15.06 -0.15 -9.51 16 16 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 17 C -0.04 -1.29 5.50 -17.43 -0.10 -1.38 16 18 N -0.94 -29.74 13.70 55.49 0.76 -28.98 16 19 Si 1.08 26.19 29.92 -169.99 -5.09 21.11 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.11 -1.69 4.03 -87.78 -0.35 -2.04 16 24 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 25 C 0.12 2.10 4.38 -2.87 -0.01 2.09 16 26 C -0.15 -1.52 9.75 -26.70 -0.26 -1.78 16 27 C -0.16 -1.51 9.96 -26.70 -0.27 -1.78 16 28 H 0.05 0.70 7.65 -51.93 -0.40 0.31 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.62 5.92 -51.93 -0.31 0.31 16 32 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.06 0.63 5.98 -51.93 -0.31 0.32 16 34 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.93 7.29 -51.93 -0.38 0.55 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.47 7.91 -51.93 -0.41 1.06 16 39 H 0.37 9.54 4.16 -40.82 -0.17 9.37 16 40 H 0.26 8.04 6.78 -40.82 -0.28 7.76 16 41 H 0.08 1.59 6.30 -51.93 -0.33 1.26 16 42 H 0.08 1.57 8.07 -51.93 -0.42 1.15 16 43 H 0.10 1.25 8.02 -51.93 -0.42 0.84 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -33.50 354.86 -9.50 -43.00 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -7.67 Total: 9.56 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.12 Total: -10.86 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.06 Total: -57.24 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -5.09 Total: 21.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.50 -9.50 -43.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026354911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.417 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds