Wall clock time and date at job start Tue Mar 31 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47125 * 2 1 4 4 C 1.50692 * 115.55245 * 299.70015 * 3 2 1 5 5 O 1.21291 * 119.99915 * 112.52730 * 4 3 2 6 6 N 1.34777 * 120.00427 * 292.53410 * 4 3 2 7 7 C 1.47212 * 126.70067 * 354.52066 * 6 4 3 8 8 C 1.53773 * 106.37988 * 148.73984 * 7 6 4 9 9 H 1.09002 * 112.38765 * 256.84723 * 8 7 6 10 10 C 1.54328 * 109.06370 * 132.42916 * 8 7 6 11 11 C 1.55059 * 103.93610 * 222.02981 * 10 8 7 12 12 C 1.55062 * 102.13767 * 40.04206 * 11 10 8 13 13 H 1.08996 * 110.53757 * 78.57307 * 12 11 10 14 14 N 1.46501 * 110.52988 * 201.34578 * 12 11 10 15 15 C 1.36936 * 120.00092 * 273.54190 * 14 12 11 16 16 H 1.08000 * 119.99785 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99962 * 180.02562 * 15 14 12 18 18 N 1.31608 * 119.99929 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47172 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47383 * 119.99716 * 19 17 15 22 22 H 1.48508 * 109.46696 * 239.99745 * 19 17 15 23 23 C 1.54356 * 103.91905 * 319.98415 * 12 11 10 24 24 H 1.09000 * 112.33205 * 262.35409 * 23 12 11 25 25 C 1.47209 * 126.70303 * 174.54481 * 6 4 3 26 26 C 1.53000 * 117.49673 * 85.37849 * 3 2 1 27 27 C 1.53000 * 117.49651 * 154.03420 * 3 2 1 28 28 H 1.09008 * 109.47333 * 63.21319 * 1 2 3 29 29 H 1.09005 * 109.47612 * 183.21289 * 1 2 3 30 30 H 1.09001 * 109.47354 * 303.21420 * 1 2 3 31 31 H 1.08997 * 109.47032 * 239.99583 * 2 1 3 32 32 H 1.09005 * 109.46973 * 120.00289 * 2 1 3 33 33 H 1.08997 * 110.07266 * 29.50946 * 7 6 4 34 34 H 1.09001 * 110.07205 * 267.96944 * 7 6 4 35 35 H 1.08998 * 110.53621 * 103.41580 * 10 8 7 36 36 H 1.09003 * 110.53436 * 340.64224 * 10 8 7 37 37 H 1.08999 * 110.89937 * 158.25588 * 11 10 8 38 38 H 1.08990 * 110.90337 * 281.82270 * 11 10 8 39 39 H 0.96998 * 119.99846 * 93.54664 * 14 12 11 40 40 H 0.97008 * 119.99809 * 179.97438 * 18 17 15 41 41 H 1.09001 * 110.07238 * 92.03255 * 25 6 4 42 42 H 1.08994 * 110.12670 * 330.51356 * 25 6 4 43 43 H 1.09001 * 117.49610 * 214.99939 * 26 3 2 44 44 H 1.08996 * 117.50263 * 0.02562 * 26 3 2 45 45 H 1.09000 * 117.50353 * 359.97438 * 27 3 2 46 46 H 1.09003 * 117.50172 * 144.96967 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 1.6215 2.2798 -1.1809 5 8 0.8607 3.2113 -1.0247 6 7 2.0926 1.9936 -2.4108 7 6 3.1017 0.9774 -2.7519 8 6 2.7499 0.4730 -4.1613 9 1 2.2647 -0.5030 -4.1439 10 6 4.0285 0.4589 -5.0254 11 6 3.5604 1.0172 -6.3942 12 6 2.5949 2.1539 -5.9697 13 1 3.1553 3.0386 -5.6677 14 7 1.6707 2.4767 -7.0596 15 6 2.0356 3.3799 -8.0219 16 1 3.0049 3.8540 -7.9777 17 6 1.1596 3.6862 -9.0543 18 7 -0.0215 3.1080 -9.1084 19 14 1.6578 4.9178 -10.3675 20 1 3.0253 5.4209 -10.0810 21 1 1.6414 4.2574 -11.6973 22 1 0.7024 6.0548 -10.3676 23 6 1.8296 1.5614 -4.7673 24 1 0.8586 1.1569 -5.0529 25 6 1.6991 2.6364 -3.6753 26 6 2.1723 2.1449 1.3528 27 6 3.4258 1.7017 0.5942 28 1 -0.3634 0.4632 -0.9174 29 1 -0.3634 -1.0261 0.0576 30 1 -0.3634 0.5629 0.8598 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.0596 0.1542 -2.0387 34 1 4.0964 1.4230 -2.7515 35 1 4.4043 -0.5583 -5.1357 36 1 4.7914 1.1043 -4.5899 37 1 4.4027 1.4137 -6.9610 38 1 3.0340 0.2532 -6.9663 39 1 0.8002 2.0506 -7.0995 40 1 -0.6338 3.3223 -9.8297 41 1 2.3634 3.4728 -3.8924 42 1 0.6679 2.9841 -3.6142 43 1 1.9567 3.2128 1.3885 44 1 1.8965 1.5793 2.2427 45 1 3.9740 0.8448 0.9855 46 1 4.0351 2.4777 0.1307 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026354912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:28 Heat of formation + Delta-G solvation = -6.721144 kcal Electronic energy + Delta-G solvation = -24360.998052 eV Core-core repulsion = 21057.957824 eV Total energy + Delta-G solvation = -3303.040228 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -40.62993 -39.01493 -36.84894 -35.18071 -33.35493 -32.16044 -31.02612 -29.59939 -28.43896 -25.52514 -24.70298 -23.78688 -22.90288 -22.65308 -21.54756 -20.15928 -19.14890 -18.56799 -17.12276 -16.71605 -16.15465 -15.80286 -15.38220 -14.76725 -14.46541 -14.26652 -14.06495 -13.72528 -13.41937 -13.13121 -13.02554 -12.75335 -12.52246 -12.31757 -11.90208 -11.86681 -11.72136 -11.65815 -11.35106 -11.14264 -10.85107 -10.79201 -10.70131 -10.60623 -10.38425 -10.32287 -10.20196 -10.16333 -9.93075 -9.69258 -9.59620 -8.88244 -8.58131 -6.95156 -5.77415 -3.06093 2.59993 2.97678 3.43240 3.48835 3.49249 3.51147 4.27917 4.41064 4.54522 4.58180 4.63973 4.67452 4.84988 4.90346 5.10350 5.18868 5.30480 5.34544 5.36883 5.44027 5.45028 5.55564 5.61017 5.62638 5.70065 5.75401 5.78761 5.87725 5.88024 5.91915 5.94205 5.99434 6.06873 6.10667 6.20895 6.25540 6.34654 6.44867 6.54468 6.65545 6.78492 7.03811 7.63845 7.70647 8.22897 8.41111 9.52485 10.09824 10.43907 11.45248 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.003633 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.731175 B = 7704.693959 C = 8046.663434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 C -0.152 4.152 4 C 0.566 3.434 5 O -0.539 6.539 6 N -0.611 5.611 7 C 0.105 3.895 8 C -0.101 4.101 9 H 0.085 0.915 10 C -0.117 4.117 11 C -0.143 4.143 12 C 0.185 3.815 13 H 0.055 0.945 14 N -0.721 5.721 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.104 4.104 24 H 0.089 0.911 25 C 0.115 3.885 26 C -0.145 4.145 27 C -0.161 4.161 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.875 -9.296 19.450 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.118 4.118 3 C -0.156 4.156 4 C 0.354 3.646 5 O -0.416 6.416 6 N -0.344 5.344 7 C -0.018 4.018 8 C -0.120 4.120 9 H 0.104 0.896 10 C -0.155 4.155 11 C -0.183 4.183 12 C 0.074 3.926 13 H 0.073 0.927 14 N -0.361 5.361 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.125 4.125 24 H 0.107 0.893 25 C -0.007 4.007 26 C -0.182 4.182 27 C -0.198 4.198 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.488 -8.603 19.506 22.595 hybrid contribution -0.055 0.470 -0.927 1.041 sum 7.432 -8.132 18.579 21.600 Atomic orbital electron populations 1.21727 0.94914 1.01600 1.02609 1.21087 0.96605 0.91474 1.02604 1.21452 1.02461 0.97365 0.94274 1.19103 0.79944 0.83610 0.81932 1.90709 1.36261 1.30240 1.84403 1.48560 1.41533 1.38075 1.06246 1.22366 0.91662 0.91121 0.96603 1.22569 0.97088 0.99016 0.93350 0.89643 1.22504 0.95610 1.00570 0.96802 1.23296 1.00087 0.99903 0.95045 1.21231 0.90299 0.94248 0.86818 0.92688 1.42440 1.16850 1.50592 1.26212 1.19271 0.99818 1.15934 1.01995 0.91142 1.24732 0.96366 1.00494 0.99253 1.69665 1.07950 1.46271 1.34134 0.86148 0.77552 0.80844 0.81832 1.20557 1.21900 1.21876 1.22893 0.99790 0.94314 0.95467 0.89295 1.22194 1.01620 0.95601 0.81320 1.22998 1.00318 1.01634 0.93283 1.23095 0.89910 1.03713 1.03114 0.92575 0.92382 0.92343 0.90903 0.90985 0.90661 0.91239 0.92187 0.91724 0.92172 0.91521 0.78185 0.93553 0.91097 0.90490 0.87959 0.87989 0.87872 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.68 37.16 0.36 -1.13 16 2 C -0.08 -0.71 5.67 -26.74 -0.15 -0.86 16 3 C -0.15 -1.62 1.13 -155.67 -0.18 -1.80 16 4 C 0.57 8.37 6.35 -10.99 -0.07 8.30 16 5 O -0.54 -10.19 17.03 5.55 0.09 -10.09 16 6 N -0.61 -8.56 3.32 -171.59 -0.57 -9.13 16 7 C 0.11 1.16 6.40 -3.25 -0.02 1.14 16 8 C -0.10 -1.24 3.91 -88.53 -0.35 -1.58 16 9 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 10 C -0.12 -1.43 6.35 -24.95 -0.16 -1.58 16 11 C -0.14 -2.35 6.60 -24.55 -0.16 -2.51 16 12 C 0.18 3.48 3.02 -66.13 -0.20 3.28 16 13 H 0.06 1.08 7.16 -51.93 -0.37 0.70 16 14 N -0.72 -17.55 5.23 -51.69 -0.27 -17.82 16 15 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 19 Si 0.90 22.33 29.55 -169.99 -5.02 17.31 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 C -0.10 -1.66 3.58 -88.51 -0.32 -1.97 16 24 H 0.09 1.52 7.82 -51.93 -0.41 1.12 16 25 C 0.11 1.86 6.52 -3.25 -0.02 1.84 16 26 C -0.14 -1.37 9.77 -26.70 -0.26 -1.63 16 27 C -0.16 -1.36 9.95 -26.70 -0.27 -1.62 16 28 H 0.06 0.68 7.68 -51.92 -0.40 0.28 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.62 6.02 -51.93 -0.31 0.30 16 32 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 33 H 0.08 0.68 5.31 -51.93 -0.28 0.41 16 34 H 0.07 0.72 7.13 -51.93 -0.37 0.35 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.73 7.19 -51.93 -0.37 0.36 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.38 10.00 7.59 -40.82 -0.31 9.69 16 40 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 1.20 7.13 -51.93 -0.37 0.83 16 42 H 0.08 1.39 7.98 -51.93 -0.41 0.98 16 43 H 0.10 1.12 8.03 -51.93 -0.42 0.70 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -31.70 360.47 -9.44 -41.14 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.79 Total: 7.68 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -2.03 Total: -7.25 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.12 Total: -54.22 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.70 -9.44 -41.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026354912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.416 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds