Wall clock time and date at job start Tue Mar 31 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47107 * 119.99580 * 2 1 4 4 O 1.21618 * 120.00111 * 79.24708 * 3 2 1 5 5 N 1.34775 * 120.00089 * 259.24147 * 3 2 1 6 6 C 1.46926 * 120.62865 * 4.76535 * 5 3 2 7 7 C 1.53623 * 108.54338 * 126.36633 * 6 5 3 8 8 C 1.53039 * 109.24178 * 54.85658 * 7 6 5 9 9 C 1.53045 * 109.53801 * 298.50664 * 8 7 6 10 10 H 1.08996 * 109.52383 * 301.40237 * 9 8 7 11 11 N 1.46491 * 109.49920 * 181.31437 * 9 8 7 12 12 C 1.46503 * 120.00272 * 300.16862 * 11 9 8 13 13 C 1.36943 * 120.00096 * 120.16634 * 11 9 8 14 14 H 1.08009 * 119.99451 * 24.22375 * 13 11 9 15 15 C 1.38810 * 120.00511 * 204.23169 * 13 11 9 16 16 N 1.31625 * 119.99613 * 9.16193 * 15 13 11 17 17 Si 1.86793 * 120.00020 * 189.16422 * 15 13 11 18 18 H 1.48494 * 109.47424 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47372 * 120.00055 * 17 15 13 20 20 H 1.48508 * 109.46951 * 239.99479 * 17 15 13 21 21 C 1.46922 * 120.63095 * 185.03853 * 5 3 2 22 22 C 1.32988 * 120.00336 * 179.97438 * 2 1 3 23 23 C 1.51407 * 136.31638 * 179.63245 * 22 2 1 24 24 C 1.53378 * 87.51714 * 206.05493 * 23 22 2 25 25 C 1.51408 * 136.31458 * 359.97438 * 22 2 1 26 26 H 1.08997 * 109.47036 * 85.16328 * 1 2 3 27 27 H 1.09000 * 109.47050 * 205.15971 * 1 2 3 28 28 H 1.08994 * 109.47287 * 325.16059 * 1 2 3 29 29 H 1.08998 * 109.58619 * 246.19672 * 6 5 3 30 30 H 1.09005 * 109.58750 * 6.62110 * 6 5 3 31 31 H 1.09001 * 109.63730 * 294.86209 * 7 6 5 32 32 H 1.09005 * 109.45690 * 174.74130 * 7 6 5 33 33 H 1.09003 * 109.46004 * 178.49258 * 8 7 6 34 34 H 1.08996 * 109.46418 * 58.53101 * 8 7 6 35 35 H 1.08999 * 109.46745 * 95.21739 * 12 11 9 36 36 H 1.09006 * 109.46833 * 215.21135 * 12 11 9 37 37 H 1.08996 * 109.46857 * 335.21375 * 12 11 9 38 38 H 0.96997 * 119.99842 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.58986 * 353.38094 * 21 5 3 40 40 H 1.09004 * 109.58361 * 113.66016 * 21 5 3 41 41 H 1.09000 * 113.56003 * 320.63765 * 23 22 2 42 42 H 1.09000 * 113.56039 * 91.37223 * 23 22 2 43 43 H 1.08998 * 113.97193 * 220.29403 * 24 23 22 44 44 H 1.09003 * 113.70951 * 88.80681 * 24 23 22 45 45 H 1.08989 * 113.56433 * 268.63003 * 25 22 2 46 46 H 1.08997 * 113.55866 * 39.29407 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 2.3763 1.8989 1.0347 5 7 2.7681 1.7487 -1.1467 6 6 2.5270 1.0602 -2.4220 7 6 1.9620 2.0761 -3.4265 8 6 2.9150 3.2693 -3.5271 9 6 3.0255 3.9526 -2.1622 10 1 2.0376 4.2784 -1.8368 11 7 3.9133 5.1132 -2.2668 12 6 5.3045 4.9355 -2.6902 13 6 3.4428 6.3643 -1.9689 14 1 2.5964 6.4796 -1.3079 15 6 4.0534 7.4841 -2.5165 16 7 4.9630 7.3437 -3.4574 17 14 3.5844 9.1902 -1.9178 18 1 2.5455 9.0765 -0.8629 19 1 4.7836 9.8667 -1.3614 20 1 3.0509 9.9841 -3.0539 21 6 3.5979 2.9612 -1.1442 22 6 2.1720 -1.1517 0.0005 23 6 3.6251 -1.5770 -0.0060 24 6 3.1710 -2.8819 -0.6718 25 6 1.8139 -2.6228 0.0016 26 1 -0.3633 0.0866 -1.0240 27 1 -0.3633 -0.9302 0.4369 28 1 -0.3633 0.8434 0.5870 29 1 3.4643 0.6516 -2.7995 30 1 1.8087 0.2542 -2.2721 31 1 0.9838 2.4191 -3.0895 32 1 1.8651 1.6043 -4.4044 33 1 2.5310 3.9800 -4.2589 34 1 3.8996 2.9223 -3.8403 35 1 5.3828 5.1103 -3.7633 36 1 5.9393 5.6450 -2.1593 37 1 5.6263 3.9192 -2.4631 38 1 5.3900 8.1262 -3.8398 39 1 3.5865 3.4098 -0.1509 40 1 4.6214 2.7040 -1.4172 41 1 4.2567 -0.9603 -0.6455 42 1 4.0421 -1.7187 0.9911 43 1 3.6836 -3.7697 -0.3015 44 1 3.1396 -2.8309 -1.7602 45 1 1.7344 -3.0511 1.0007 46 1 0.9593 -2.8636 -0.6306 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027403505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:09 Heat of formation + Delta-G solvation = 24.665932 kcal Electronic energy + Delta-G solvation = -24498.917472 eV Core-core repulsion = 21197.238290 eV Total energy + Delta-G solvation = -3301.679182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.21391 -38.65768 -37.29386 -35.02877 -33.22922 -32.07521 -31.25522 -28.76554 -26.88321 -25.98884 -25.71187 -25.18438 -23.64702 -22.49739 -21.57764 -20.16078 -18.80065 -17.81299 -16.72862 -16.49051 -15.92906 -15.60610 -15.29152 -14.82091 -14.26151 -14.02377 -13.84200 -13.53049 -13.41470 -13.11544 -12.71495 -12.63669 -12.59709 -12.41596 -12.26751 -12.08432 -11.91181 -11.81594 -11.14706 -11.02480 -10.92923 -10.81372 -10.63693 -10.59136 -10.37883 -10.26963 -10.07744 -9.86458 -9.74959 -9.52388 -8.84727 -8.58795 -8.29909 -6.71299 -5.69464 -3.17944 1.65751 2.79628 3.26117 3.40127 3.47479 3.50415 4.17647 4.33015 4.48193 4.51842 4.79567 4.89139 5.01555 5.16496 5.21790 5.35065 5.37984 5.41965 5.47346 5.48019 5.53421 5.58173 5.62331 5.64000 5.71130 5.75503 5.85415 5.90820 6.00095 6.03255 6.09610 6.20624 6.25674 6.41721 6.55265 6.62154 6.70212 6.83053 6.97356 7.03432 7.41534 7.66980 7.76952 7.84623 8.37526 8.44668 9.26734 9.88519 10.37468 11.34768 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.027307 B = 0.003778 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.127280 B = 7409.158797 C = 7655.457649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.130 4.130 3 C 0.559 3.441 4 O -0.540 6.540 5 N -0.599 5.599 6 C 0.112 3.888 7 C -0.131 4.131 8 C -0.131 4.131 9 C 0.170 3.830 10 H 0.065 0.935 11 N -0.593 5.593 12 C 0.163 3.837 13 C -0.253 4.253 14 H 0.068 0.932 15 C 0.003 3.997 16 N -0.909 5.909 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.096 3.904 22 C -0.127 4.127 23 C -0.108 4.108 24 C -0.136 4.136 25 C -0.098 4.098 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.031 0.969 36 H 0.041 0.959 37 H -0.003 1.003 38 H 0.251 0.749 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.898 -21.267 1.686 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.133 4.133 3 C 0.346 3.654 4 O -0.418 6.418 5 N -0.331 5.331 6 C -0.011 4.011 7 C -0.170 4.170 8 C -0.171 4.171 9 C 0.061 3.939 10 H 0.083 0.917 11 N -0.315 5.315 12 C 0.019 3.981 13 C -0.383 4.383 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.554 5.554 17 Si 0.735 3.265 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.217 1.217 21 C -0.028 4.028 22 C -0.128 4.128 23 C -0.145 4.145 24 C -0.173 4.173 25 C -0.135 4.135 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.015 0.985 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.692 -20.756 2.151 21.629 hybrid contribution -0.083 1.026 0.084 1.033 sum -5.776 -19.730 2.235 20.679 Atomic orbital electron populations 1.20588 0.89477 1.03101 1.02452 1.20463 0.96433 0.91241 1.05119 1.18378 0.78603 0.84882 0.83529 1.90806 1.59771 1.59267 1.31927 1.48202 1.50662 1.27562 1.06718 1.21784 1.00612 0.94905 0.83819 1.22009 0.99924 0.96884 0.98215 1.22116 0.98516 0.96083 1.00403 1.20573 0.94419 0.87267 0.91652 0.91722 1.43884 1.06761 1.01954 1.78924 1.20795 0.84340 0.93940 0.99056 1.19290 1.14525 0.82541 1.21900 0.91398 1.25052 0.99449 0.98104 0.96894 1.70067 1.29599 1.28198 1.27539 0.86167 0.77829 0.84502 0.77987 1.20277 1.21628 1.21733 1.22433 0.93331 0.84152 1.02858 1.22964 0.97532 0.93653 0.98616 1.22153 0.93942 0.96780 1.01590 1.22635 0.96736 0.97611 1.00320 1.22152 0.98164 0.91825 1.01370 0.91054 0.91282 0.91032 0.91762 0.90316 0.91766 0.91387 0.91482 0.92505 0.95027 0.93986 0.98482 0.93862 0.89276 0.91894 0.90819 0.88823 0.90693 0.89697 0.88869 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.01 36.01 0.36 -0.65 16 2 C -0.13 -1.64 3.83 -102.84 -0.39 -2.04 16 3 C 0.56 9.37 7.00 -12.66 -0.09 9.28 16 4 O -0.54 -11.39 16.52 5.26 0.09 -11.30 16 5 N -0.60 -9.58 2.97 -173.89 -0.52 -10.09 16 6 C 0.11 1.41 6.30 -3.49 -0.02 1.39 16 7 C -0.13 -1.76 6.10 -26.39 -0.16 -1.92 16 8 C -0.13 -2.33 5.14 -26.69 -0.14 -2.46 16 9 C 0.17 3.54 2.74 -67.81 -0.19 3.36 16 10 H 0.06 1.44 7.87 -51.93 -0.41 1.03 16 11 N -0.59 -14.96 2.81 -173.34 -0.49 -15.45 16 12 C 0.16 4.01 8.01 59.85 0.48 4.49 16 13 C -0.25 -7.07 9.58 -15.06 -0.14 -7.22 16 14 H 0.07 1.89 7.82 -52.48 -0.41 1.48 16 15 C 0.00 0.09 5.18 -17.43 -0.09 0.00 16 16 N -0.91 -26.55 10.58 55.49 0.59 -25.97 16 17 Si 0.90 22.26 29.56 -169.99 -5.03 17.23 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 C 0.10 1.83 5.79 -3.71 -0.02 1.81 16 22 C -0.13 -1.35 6.39 -100.48 -0.64 -1.99 16 23 C -0.11 -1.06 7.83 -27.56 -0.22 -1.27 16 24 C -0.14 -0.98 8.17 -26.18 -0.21 -1.20 16 25 C -0.10 -0.74 7.63 -27.39 -0.21 -0.95 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.57 7.78 -51.93 -0.40 0.17 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.84 6.23 -51.93 -0.32 0.52 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.01 7.71 -51.93 -0.40 0.61 16 35 H 0.03 0.83 7.32 -51.93 -0.38 0.45 16 36 H 0.04 1.12 7.33 -51.93 -0.38 0.74 16 37 H 0.00 -0.07 6.37 -51.93 -0.33 -0.40 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.09 1.94 6.99 -51.93 -0.36 1.58 16 40 H 0.06 1.18 6.51 -51.93 -0.34 0.85 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -32.07 361.41 -9.54 -41.62 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.95 Total: -2.09 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.68 Total: 0.60 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.42 Total: -51.51 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.07 -9.54 -41.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027403505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.282 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds