Wall clock time and date at job start Tue Mar 31 2020 06:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.47104 * 120.00035 * 2 1 4 4 O 1.21610 * 119.99655 * 153.59726 * 3 2 1 5 5 N 1.34776 * 119.99913 * 333.59564 * 3 2 1 6 6 C 1.46927 * 120.63245 * 355.60596 * 5 3 2 7 7 C 1.53192 * 108.77293 * 233.63426 * 6 5 3 8 8 C 1.53048 * 109.31306 * 305.36045 * 7 6 5 9 9 C 1.53035 * 109.53198 * 61.36908 * 8 7 6 10 10 H 1.08999 * 109.50378 * 58.58720 * 9 8 7 11 11 N 1.46507 * 109.49488 * 178.68167 * 9 8 7 12 12 C 1.46496 * 119.99849 * 59.84011 * 11 9 8 13 13 C 1.36935 * 120.00067 * 239.83897 * 11 9 8 14 14 H 1.08003 * 119.99876 * 22.34199 * 13 11 9 15 15 C 1.38812 * 120.00091 * 202.34536 * 13 11 9 16 16 N 1.31617 * 119.99877 * 17.34944 * 15 13 11 17 17 Si 1.86796 * 120.00054 * 197.35354 * 15 13 11 18 18 H 1.48501 * 109.47327 * 89.99668 * 17 15 13 19 19 H 1.48503 * 109.47094 * 209.99689 * 17 15 13 20 20 H 1.48503 * 109.47001 * 329.99660 * 17 15 13 21 21 C 1.46922 * 120.62743 * 175.63226 * 5 3 2 22 22 C 1.32990 * 119.99875 * 180.02562 * 2 1 3 23 23 C 1.51409 * 136.31766 * 179.62795 * 22 2 1 24 24 C 1.53374 * 87.51883 * 206.05501 * 23 22 2 25 25 C 1.51407 * 136.31868 * 359.97438 * 22 2 1 26 26 H 1.08991 * 109.47206 * 96.87100 * 1 2 3 27 27 H 1.08999 * 109.47052 * 216.87822 * 1 2 3 28 28 H 1.09003 * 109.46626 * 336.86985 * 1 2 3 29 29 H 1.08998 * 109.58193 * 353.41791 * 6 5 3 30 30 H 1.08996 * 109.58484 * 113.70200 * 6 5 3 31 31 H 1.08991 * 109.50166 * 65.31946 * 7 6 5 32 32 H 1.09005 * 109.49101 * 185.38536 * 7 6 5 33 33 H 1.08999 * 109.45898 * 301.35037 * 8 7 6 34 34 H 1.08998 * 109.45847 * 181.39064 * 8 7 6 35 35 H 1.08998 * 109.47207 * 95.21579 * 12 11 9 36 36 H 1.08996 * 109.47151 * 215.21635 * 12 11 9 37 37 H 1.09004 * 109.47062 * 335.21778 * 12 11 9 38 38 H 0.97002 * 120.00390 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.58976 * 6.57818 * 21 5 3 40 40 H 1.09000 * 109.58378 * 246.15330 * 21 5 3 41 41 H 1.08999 * 113.56139 * 320.63813 * 23 22 2 42 42 H 1.09004 * 113.56086 * 91.36775 * 23 22 2 43 43 H 1.09000 * 113.96848 * 220.29089 * 24 23 22 44 44 H 1.08991 * 113.71647 * 88.80667 * 24 23 22 45 45 H 1.08996 * 113.56486 * 268.63357 * 25 22 2 46 46 H 1.09006 * 113.55738 * 39.28593 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2426 1.2740 0.0000 4 8 3.3635 1.3288 0.4683 5 7 1.6741 2.3803 -0.5191 6 6 0.3610 2.3101 -1.1744 7 6 0.4759 2.9194 -2.5752 8 6 1.0492 4.3343 -2.4663 9 6 2.4486 4.2733 -1.8498 10 1 3.0913 3.6461 -2.4675 11 7 3.0091 5.6248 -1.7749 12 6 2.3227 6.6605 -0.9989 13 6 4.1748 5.9199 -2.4301 14 1 4.4916 5.3153 -3.2672 15 6 4.9492 6.9958 -2.0185 16 7 4.7680 7.5183 -0.8242 17 14 6.2484 7.7023 -3.1597 18 1 5.6458 8.7739 -3.9927 19 1 7.3602 8.2679 -2.3540 20 1 6.7719 6.6268 -4.0397 21 6 2.3561 3.6793 -0.4408 22 6 2.1720 -1.1517 -0.0005 23 6 3.6250 -1.5772 -0.0075 24 6 3.1708 -2.8815 -0.6743 25 6 1.8138 -2.6228 -0.0007 26 1 -0.3633 -0.1229 -1.0202 27 1 -0.3633 -0.8220 0.6167 28 1 -0.3633 0.9451 0.4037 29 1 0.0473 1.2692 -1.2533 30 1 -0.3696 2.8687 -0.5894 31 1 1.1371 2.3050 -3.1861 32 1 -0.5111 2.9608 -3.0359 33 1 0.4004 4.9414 -1.8349 34 1 1.1089 4.7793 -3.4595 35 1 2.7536 6.7110 0.0010 36 1 2.4409 7.6241 -1.4945 37 1 1.2627 6.4171 -0.9259 38 1 5.3088 8.2705 -0.5366 39 1 3.3587 3.5418 -0.0356 40 1 1.7887 4.3516 0.2027 41 1 4.2567 -0.9600 -0.6464 42 1 4.0421 -1.7197 0.9895 43 1 3.6834 -3.7696 -0.3049 44 1 3.1393 -2.8297 -1.7626 45 1 1.7343 -3.0521 0.9980 46 1 0.9591 -2.8631 -0.6331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027403506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:13 Heat of formation + Delta-G solvation = 44.844012 kcal Electronic energy + Delta-G solvation = -24445.925425 eV Core-core repulsion = 21145.121231 eV Total energy + Delta-G solvation = -3300.804195 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.23575 -38.65086 -37.14537 -35.22769 -33.48323 -31.96922 -31.15653 -28.68587 -26.99514 -25.97480 -25.70461 -25.19321 -23.47807 -22.44580 -21.47769 -20.17694 -18.78033 -17.68665 -16.73777 -16.15906 -15.89278 -15.70640 -15.13484 -14.74189 -14.43076 -14.13809 -13.88524 -13.62746 -13.29607 -13.04126 -12.71626 -12.62114 -12.57058 -12.34731 -12.18853 -11.94752 -11.80736 -11.69915 -11.10131 -10.97700 -10.88375 -10.77066 -10.54422 -10.42010 -10.34606 -10.24520 -10.09263 -9.80683 -9.70078 -9.33104 -8.89390 -8.53047 -8.17816 -6.72238 -5.69542 -3.14234 1.45554 3.24046 3.42079 3.46397 3.48549 3.50080 4.23907 4.38197 4.53324 4.60345 4.83132 4.91400 4.97056 5.19386 5.24070 5.32631 5.37788 5.40149 5.47237 5.51679 5.55201 5.62175 5.63101 5.67251 5.76313 5.86010 5.93572 5.98076 6.05225 6.11011 6.16661 6.21313 6.29105 6.43997 6.55578 6.65640 6.74326 6.84713 6.99203 7.06522 7.36060 7.72537 7.81704 7.84984 8.42231 8.54864 9.25956 9.89719 10.38646 11.35168 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.020657 B = 0.004022 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.166030 B = 6960.381720 C = 7659.442459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.158 4.158 3 C 0.552 3.448 4 O -0.540 6.540 5 N -0.601 5.601 6 C 0.077 3.923 7 C -0.132 4.132 8 C -0.133 4.133 9 C 0.169 3.831 10 H 0.063 0.937 11 N -0.591 5.591 12 C 0.159 3.841 13 C -0.257 4.257 14 H 0.068 0.932 15 C 0.004 3.996 16 N -0.903 5.903 17 Si 0.903 3.097 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.099 3.901 22 C -0.083 4.083 23 C -0.100 4.100 24 C -0.142 4.142 25 C -0.102 4.102 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.038 0.962 37 H 0.002 0.998 38 H 0.252 0.748 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 -18.156 0.227 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.161 4.161 3 C 0.341 3.659 4 O -0.418 6.418 5 N -0.334 5.334 6 C -0.045 4.045 7 C -0.170 4.170 8 C -0.173 4.173 9 C 0.060 3.940 10 H 0.082 0.918 11 N -0.312 5.312 12 C 0.014 3.986 13 C -0.387 4.387 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.547 5.547 17 Si 0.733 3.267 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.205 1.205 21 C -0.025 4.025 22 C -0.085 4.085 23 C -0.137 4.137 24 C -0.179 4.179 25 C -0.139 4.139 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.115 0.885 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.539 -17.921 0.560 21.322 hybrid contribution 0.670 0.690 -0.530 1.099 sum -10.869 -17.231 0.029 20.372 Atomic orbital electron populations 1.21023 0.90909 1.03084 1.01613 1.20493 0.95732 0.91621 1.08243 1.18294 0.85689 0.83521 0.78399 1.90786 1.18816 1.85297 1.46905 1.48138 1.20019 1.08728 1.56492 1.22652 0.84806 1.03554 0.93523 1.21920 1.00946 0.97894 0.96276 1.22081 0.98673 0.94886 1.01617 1.20623 0.92726 0.87590 0.93068 0.91840 1.43950 1.24997 1.03672 1.58607 1.20776 0.90281 0.91285 0.96212 1.19217 0.98489 1.12715 1.08238 0.91400 1.24980 0.97919 1.00748 0.95829 1.70090 1.42026 1.26086 1.16492 0.86272 0.81054 0.79185 0.80169 1.21532 1.21786 1.20479 1.22518 0.98388 0.81284 1.00305 1.23120 0.98002 0.93541 0.93825 1.22115 0.94039 0.95765 1.01808 1.22713 0.96679 0.98180 1.00330 1.22241 0.98326 0.91824 1.01537 0.90471 0.91732 0.90653 0.87462 0.91849 0.91910 0.91418 0.92347 0.91843 0.95097 0.94280 0.97951 0.93748 0.89097 0.92226 0.90289 0.88461 0.90611 0.89844 0.88499 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 7.90 36.01 0.28 -0.72 16 2 C -0.16 -2.07 5.64 -102.84 -0.58 -2.65 16 3 C 0.55 9.66 7.44 -12.66 -0.09 9.57 16 4 O -0.54 -11.65 15.40 5.27 0.08 -11.57 16 5 N -0.60 -10.05 2.97 -174.17 -0.52 -10.57 16 6 C 0.08 0.96 4.76 -3.71 -0.02 0.94 16 7 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 8 C -0.13 -2.26 5.13 -26.69 -0.14 -2.39 16 9 C 0.17 3.58 2.74 -67.81 -0.19 3.39 16 10 H 0.06 1.44 7.86 -51.93 -0.41 1.03 16 11 N -0.59 -15.01 2.81 -173.35 -0.49 -15.50 16 12 C 0.16 3.92 7.94 59.84 0.48 4.40 16 13 C -0.26 -7.24 9.57 -15.06 -0.14 -7.38 16 14 H 0.07 1.89 7.84 -52.48 -0.41 1.48 16 15 C 0.00 0.12 5.01 -17.43 -0.09 0.03 16 16 N -0.90 -26.86 10.93 55.49 0.61 -26.26 16 17 Si 0.90 22.36 29.59 -169.99 -5.03 17.33 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.10 2.01 5.80 -3.71 -0.02 1.99 16 22 C -0.08 -1.00 6.56 -100.48 -0.66 -1.66 16 23 C -0.10 -1.20 7.06 -27.56 -0.19 -1.39 16 24 C -0.14 -1.22 8.17 -26.19 -0.21 -1.44 16 25 C -0.10 -0.85 7.85 -27.40 -0.22 -1.07 16 26 H 0.08 0.57 6.77 -51.93 -0.35 0.22 16 27 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 28 H 0.07 0.69 6.33 -51.93 -0.33 0.36 16 29 H 0.11 1.07 3.04 -53.60 -0.16 0.91 16 30 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.98 6.71 -51.93 -0.35 0.64 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 36 H 0.04 1.03 7.42 -51.93 -0.39 0.64 16 37 H 0.00 0.04 6.45 -51.93 -0.34 -0.29 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.09 2.19 6.99 -51.93 -0.36 1.83 16 40 H 0.06 1.21 7.52 -51.93 -0.39 0.82 16 41 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 42 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -32.83 352.66 -9.63 -42.46 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.64 Total: -0.95 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.95 Total: -0.26 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.40 Total: -52.32 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.83 -9.63 -42.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027403506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.307 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds