Wall clock time and date at job start Tue Mar 31 2020 07:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00163 * 2 1 4 4 C 1.50701 * 119.99928 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47164 * 1.06627 * 4 2 1 6 6 C 1.53000 * 109.47230 * 241.07074 * 4 2 1 7 7 C 1.50697 * 109.47139 * 121.06564 * 4 2 1 8 8 O 1.21281 * 119.99592 * 113.18022 * 7 4 2 9 9 N 1.34768 * 120.00375 * 293.17867 * 7 4 2 10 10 C 1.47165 * 120.70883 * 5.62240 * 9 7 4 11 11 C 1.55893 * 107.94899 * 132.41147 * 10 9 7 12 12 H 1.09007 * 112.45339 * 181.85411 * 11 10 9 13 13 C 1.54548 * 108.44301 * 307.13265 * 11 10 9 14 14 C 1.53720 * 104.95517 * 88.28891 * 13 11 10 15 15 C 1.54547 * 104.95495 * 359.97438 * 14 13 11 16 16 H 1.09008 * 112.17912 * 146.28360 * 15 14 13 17 17 C 1.47166 * 120.71439 * 185.59938 * 9 7 4 18 18 N 1.48306 * 106.17948 * 58.78418 * 11 10 9 19 19 C 1.36932 * 128.07927 * 106.44506 * 18 11 10 20 20 H 1.08001 * 120.00226 * 156.59734 * 19 18 11 21 21 C 1.38808 * 119.99977 * 336.59350 * 19 18 11 22 22 N 1.31621 * 120.00179 * 354.39405 * 21 19 18 23 23 Si 1.86796 * 120.00218 * 174.38532 * 21 19 18 24 24 H 1.48499 * 109.47201 * 270.00606 * 23 21 19 25 25 H 1.48504 * 109.47003 * 30.00384 * 23 21 19 26 26 H 1.48494 * 109.47431 * 150.00340 * 23 21 19 27 27 H 1.07998 * 120.00328 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00078 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47231 * 274.63512 * 3 2 1 30 30 H 1.09005 * 109.47086 * 34.63937 * 3 2 1 31 31 H 1.09001 * 109.46953 * 154.63409 * 3 2 1 32 32 H 1.09000 * 109.47536 * 184.20877 * 5 4 2 33 33 H 1.09001 * 109.47170 * 304.21540 * 5 4 2 34 34 H 1.09007 * 109.47098 * 64.21115 * 5 4 2 35 35 H 1.09000 * 109.46710 * 304.81629 * 6 4 2 36 36 H 1.09002 * 109.47192 * 64.81277 * 6 4 2 37 37 H 1.09001 * 109.47426 * 184.81668 * 6 4 2 38 38 H 1.09000 * 109.75158 * 252.36730 * 10 9 7 39 39 H 1.08996 * 109.75069 * 13.10341 * 10 9 7 40 40 H 1.09003 * 110.36510 * 207.01208 * 13 11 10 41 41 H 1.09002 * 110.36228 * 329.20913 * 13 11 10 42 42 H 1.09003 * 110.42656 * 241.06626 * 14 13 11 43 43 H 1.09001 * 110.20818 * 118.82414 * 14 13 11 44 44 H 1.09001 * 109.74701 * 107.62689 * 17 9 7 45 45 H 1.09001 * 109.78800 * 346.92227 * 17 9 7 46 46 H 0.96995 * 120.00473 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 1.0694 -2.4679 -0.0279 6 6 2.9228 -1.3985 1.2619 7 6 2.9496 -1.3730 -1.2176 8 8 4.1557 -1.3603 -1.0910 9 7 2.4018 -1.4480 -2.4467 10 6 0.9453 -1.3410 -2.6282 11 6 0.6782 -0.3283 -3.7829 12 1 -0.3856 -0.1684 -3.9587 13 6 1.4338 0.9826 -3.4681 14 6 2.8332 0.7892 -4.0741 15 6 2.8040 -0.6223 -4.7027 16 1 3.4126 -0.6836 -5.6051 17 6 3.2473 -1.6382 -3.6361 18 7 1.3680 -0.8726 -4.9777 19 6 0.8093 -1.4631 -6.0796 20 1 1.3459 -1.4743 -7.0168 21 6 -0.4469 -2.0472 -5.9921 22 7 -1.0536 -2.1319 -4.8272 23 14 -1.2764 -2.7130 -7.5277 24 1 -2.0917 -1.6414 -8.1540 25 1 -0.2422 -3.1737 -8.4887 26 1 -2.1545 -3.8530 -7.1613 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 2.1733 1.6612 -1.0242 30 1 1.5129 2.0425 0.5842 31 1 3.0494 1.1554 0.4403 32 1 1.6110 -3.4109 0.0470 33 1 0.3805 -2.3768 0.8118 34 1 0.5084 -2.4445 -0.9623 35 1 3.5716 -0.5250 1.3251 36 1 2.2769 -1.4355 2.1391 37 1 3.5320 -2.3014 1.2208 38 1 0.5333 -2.3171 -2.8843 39 1 0.4856 -0.9758 -1.7099 40 1 0.9342 1.8303 -3.9371 41 1 1.5015 1.1320 -2.3905 42 1 3.5951 0.8419 -3.2964 43 1 3.0192 1.5422 -4.8400 44 1 3.1232 -2.6515 -4.0181 45 1 4.2923 -1.4677 -3.3771 46 1 -1.9312 -2.5404 -4.7659 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029419850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:02 Heat of formation + Delta-G solvation = 30.136017 kcal Electronic energy + Delta-G solvation = -26445.934233 eV Core-core repulsion = 23144.492252 eV Total energy + Delta-G solvation = -3301.441981 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.60862 -38.16887 -36.58575 -33.61078 -32.52353 -31.63784 -30.42007 -29.28020 -28.32782 -26.46653 -25.68801 -24.21461 -23.65838 -22.62701 -20.10691 -19.63384 -18.80859 -17.84077 -16.45189 -16.03232 -15.70944 -15.22357 -14.87163 -14.63010 -14.01319 -13.81098 -13.48227 -13.18993 -13.07229 -12.84104 -12.61898 -12.38627 -12.16125 -12.07970 -11.75890 -11.61284 -11.56693 -11.43118 -11.34341 -10.98755 -10.87836 -10.77592 -10.68624 -10.50157 -10.31421 -10.00940 -9.81236 -9.68743 -9.47286 -9.36189 -8.83621 -8.37984 -7.95795 -6.71108 -5.88722 -3.25754 2.32474 3.20322 3.33528 3.40176 3.40677 3.72360 4.40626 4.78894 4.89978 5.01618 5.20351 5.30964 5.35620 5.37578 5.67767 5.71139 5.72516 5.75525 5.79097 5.82602 5.86351 5.94565 5.96156 5.99994 6.03649 6.18005 6.20231 6.22534 6.32707 6.38026 6.42877 6.49507 6.58879 6.68381 6.72581 6.73557 6.81569 6.91570 6.98690 7.07819 7.30375 7.49709 7.67876 8.14406 8.22151 8.79240 9.04728 9.65606 10.47748 11.25758 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.020906 B = 0.006153 C = 0.005791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.018914 B = 4549.258263 C = 4833.909275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 C -0.127 4.127 4 C -0.045 4.045 5 C -0.164 4.164 6 C -0.119 4.119 7 C 0.522 3.478 8 O -0.566 6.566 9 N -0.584 5.584 10 C 0.081 3.919 11 C 0.175 3.825 12 H 0.105 0.895 13 C -0.144 4.144 14 C -0.122 4.122 15 C 0.133 3.867 16 H 0.074 0.926 17 C 0.101 3.899 18 N -0.585 5.585 19 C -0.227 4.227 20 H 0.072 0.928 21 C 0.002 3.998 22 N -0.911 5.911 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.281 1.281 26 H -0.291 1.291 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 4.103 9.891 11.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.109 4.109 3 C -0.184 4.184 4 C -0.048 4.048 5 C -0.221 4.221 6 C -0.177 4.177 7 C 0.309 3.691 8 O -0.447 6.447 9 N -0.314 5.314 10 C -0.042 4.042 11 C 0.067 3.933 12 H 0.123 0.877 13 C -0.183 4.183 14 C -0.162 4.162 15 C 0.025 3.975 16 H 0.092 0.908 17 C -0.023 4.023 18 N -0.306 5.306 19 C -0.356 4.356 20 H 0.090 0.910 21 C -0.196 4.196 22 N -0.556 5.556 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.206 1.206 26 H -0.217 1.217 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.990 3.950 9.809 10.989 hybrid contribution -0.574 -0.498 -0.870 1.155 sum 2.416 3.452 8.939 9.882 Atomic orbital electron populations 1.23844 0.95098 1.02618 1.01145 1.21367 0.95041 0.94239 1.00246 1.21035 1.00245 0.94310 1.02765 1.19758 0.95900 0.94466 0.94699 1.22368 0.98872 0.96550 1.04309 1.21594 0.98703 1.02876 0.94510 1.20227 0.88165 0.76414 0.84306 1.90598 1.15079 1.52669 1.86323 1.48129 1.09067 1.69049 1.05173 1.23567 0.77509 1.02763 1.00314 1.22068 0.97767 0.87817 0.85648 0.87720 1.22703 0.96379 0.99663 0.99517 1.22346 0.97169 0.97684 0.98958 1.21965 0.88752 0.92131 0.94639 0.90775 1.22296 0.93966 1.00085 0.85991 1.45131 0.98835 1.67707 1.18953 1.18958 1.00633 1.28632 0.87329 0.91036 1.24961 0.98896 0.98945 0.96769 1.69837 1.15419 1.48273 1.22087 0.86156 0.79240 0.78302 0.82226 1.21577 1.20631 1.21685 0.87273 0.88060 0.90607 0.91753 0.91722 0.92311 0.91578 0.89374 0.91945 0.92404 0.92066 0.89714 0.89686 0.93090 0.91935 0.92725 0.92917 0.92130 0.90961 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 11.41 29.02 0.33 -2.09 16 2 C -0.11 -1.49 3.14 -101.07 -0.32 -1.81 16 3 C -0.13 -1.64 9.44 36.00 0.34 -1.30 16 4 C -0.05 -0.68 0.61 -156.81 -0.10 -0.77 16 5 C -0.16 -2.32 6.95 37.16 0.26 -2.06 16 6 C -0.12 -1.61 7.69 37.16 0.29 -1.33 16 7 C 0.52 9.69 6.15 -10.99 -0.07 9.62 16 8 O -0.57 -11.89 15.46 5.56 0.09 -11.81 16 9 N -0.58 -11.33 2.27 -170.30 -0.39 -11.71 16 10 C 0.08 1.62 3.77 -2.13 -0.01 1.61 16 11 C 0.17 3.78 3.18 -64.58 -0.21 3.58 16 12 H 0.11 2.56 6.82 -51.93 -0.35 2.21 16 13 C -0.14 -2.69 6.19 -25.54 -0.16 -2.84 16 14 C -0.12 -2.26 6.18 -25.54 -0.16 -2.42 16 15 C 0.13 2.73 4.27 -65.68 -0.28 2.45 16 16 H 0.07 1.47 8.14 -51.92 -0.42 1.04 16 17 C 0.10 2.04 5.94 -3.25 -0.02 2.02 16 18 N -0.58 -13.84 2.76 -151.42 -0.42 -14.26 16 19 C -0.23 -5.92 10.34 -15.06 -0.16 -6.07 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C 0.00 0.06 5.43 -17.43 -0.09 -0.04 16 22 N -0.91 -24.06 10.18 55.49 0.56 -23.50 16 23 Si 0.91 20.96 29.56 -169.99 -5.02 15.93 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H 0.11 1.37 5.56 -52.49 -0.29 1.08 16 28 H 0.10 1.16 8.05 -52.49 -0.42 0.73 16 29 H 0.08 1.07 5.46 -51.93 -0.28 0.78 16 30 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.06 0.85 6.62 -51.93 -0.34 0.50 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.78 7.18 -51.93 -0.37 0.41 16 34 H 0.09 1.40 4.10 -51.93 -0.21 1.19 16 35 H 0.06 0.86 6.68 -51.93 -0.35 0.51 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 38 H 0.08 1.98 6.88 -51.93 -0.36 1.62 16 39 H 0.09 1.49 2.03 -51.93 -0.11 1.38 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.07 4.13 -51.93 -0.21 0.85 16 42 H 0.05 0.99 7.86 -51.93 -0.41 0.59 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.07 1.42 7.08 -51.93 -0.37 1.05 16 46 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -28.09 331.84 -7.52 -35.62 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.00 Total: 6.19 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -0.34 Total: -1.46 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.24 Total: -49.48 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.09 -7.52 -35.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029419850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.753 kcal (2) G-P(sol) polarization free energy of solvation -28.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds