Wall clock time and date at job start Tue Mar 31 2020 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 C 1.50697 * 112.85115 * 295.26430 * 3 2 1 5 5 O 1.21277 * 120.00527 * 105.57039 * 4 3 2 6 6 N 1.34782 * 119.99521 * 285.57076 * 4 3 2 7 7 C 1.49041 * 120.07008 * 8.13178 * 6 4 3 8 8 C 1.53888 * 107.74894 * 133.48712 * 7 6 4 9 9 H 1.09002 * 112.09252 * 180.92022 * 8 7 6 10 10 C 1.54542 * 107.82782 * 304.87781 * 8 7 6 11 11 C 1.54285 * 104.94351 * 89.62731 * 10 8 7 12 12 C 1.54799 * 104.72476 * 0.08526 * 11 10 8 13 13 H 1.09008 * 112.18499 * 146.35937 * 12 11 10 14 14 C 1.47167 * 120.70728 * 186.90042 * 6 4 3 15 15 N 1.48303 * 107.74768 * 56.99511 * 8 7 6 16 16 C 1.36940 * 128.07872 * 106.50266 * 15 8 7 17 17 H 1.07995 * 120.00263 * 166.76187 * 16 15 8 18 18 C 1.38811 * 119.99769 * 346.75975 * 16 15 8 19 19 N 1.31625 * 119.99945 * 343.18398 * 18 16 15 20 20 Si 1.86798 * 120.00067 * 163.18058 * 18 16 15 21 21 H 1.48503 * 109.47170 * 90.00288 * 20 18 16 22 22 H 1.48501 * 109.47266 * 210.00264 * 20 18 16 23 23 H 1.48504 * 109.46965 * 330.00094 * 20 18 16 24 24 C 1.53790 * 113.61171 * 66.45667 * 3 2 1 25 25 C 1.53954 * 87.01766 * 89.23236 * 24 3 2 26 26 C 1.53778 * 87.11614 * 25.36118 * 25 24 3 27 27 H 1.08999 * 109.47241 * 184.63882 * 1 2 3 28 28 H 1.08997 * 109.47114 * 304.64341 * 1 2 3 29 29 H 1.08996 * 109.47135 * 64.63965 * 1 2 3 30 30 H 1.08997 * 109.47059 * 239.99378 * 2 1 3 31 31 H 1.09003 * 109.46899 * 119.99639 * 2 1 3 32 32 H 1.08994 * 111.22265 * 13.15558 * 7 6 4 33 33 H 1.09007 * 108.53961 * 252.27397 * 7 6 4 34 34 H 1.08997 * 110.36724 * 208.52476 * 10 8 7 35 35 H 1.08999 * 110.36587 * 330.73282 * 10 8 7 36 36 H 1.09000 * 110.36070 * 118.89646 * 11 10 8 37 37 H 1.08996 * 110.36412 * 241.21413 * 11 10 8 38 38 H 1.09003 * 109.74801 * 107.61233 * 14 6 4 39 39 H 1.09000 * 109.78823 * 346.90735 * 14 6 4 40 40 H 0.97001 * 119.99529 * 180.02562 * 19 18 16 41 41 H 1.09007 * 113.61137 * 203.74696 * 24 3 2 42 42 H 1.08998 * 113.61636 * 334.65322 * 24 3 2 43 43 H 1.08997 * 113.53749 * 270.80759 * 25 24 3 44 44 H 1.09002 * 113.66704 * 139.93607 * 25 24 3 45 45 H 1.08998 * 113.61873 * 220.09105 * 26 25 24 46 46 H 1.08998 * 113.69092 * 89.19689 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6763 2.1918 -1.2559 5 8 0.7980 3.0277 -1.2305 6 7 2.3272 1.9329 -2.4074 7 6 3.2764 0.7866 -2.4872 8 6 2.9714 0.0143 -3.7829 9 1 3.6189 -0.8540 -3.9047 10 6 1.4751 -0.3718 -3.7624 11 6 0.7491 0.8136 -4.4318 12 6 1.8764 1.8091 -4.7983 13 1 1.6626 2.3523 -5.7189 14 6 2.0926 2.7559 -3.6046 15 7 3.0904 0.9653 -4.9146 16 6 4.0880 1.0452 -5.8493 17 1 3.9477 1.6403 -6.7395 18 6 5.2798 0.3612 -5.6525 19 7 5.5926 -0.0845 -4.4541 20 14 6.4395 0.0732 -7.0883 21 1 7.3945 1.2061 -7.1881 22 1 7.1904 -1.1896 -6.8725 23 1 5.6556 -0.0257 -8.3456 24 6 1.7147 2.2108 1.2918 25 6 3.0510 1.6843 1.8462 26 6 3.5228 1.5716 0.3869 27 1 -0.3633 -1.0243 0.0831 28 1 -0.3633 0.5842 0.8454 29 1 -0.3633 0.4401 -0.9286 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.1676 0.1237 -1.6289 33 1 4.2924 1.1798 -2.5233 34 1 1.3117 -1.2869 -4.3316 35 1 1.1298 -0.4975 -2.7362 36 1 0.2288 0.4813 -5.3301 37 1 0.0483 1.2720 -3.7341 38 1 2.9587 3.3911 -3.7904 39 1 1.2067 3.3742 -3.4596 40 1 6.4256 -0.5621 -4.3166 41 1 1.6918 3.2929 1.1622 42 1 0.8409 1.8281 1.8193 43 1 2.9637 0.7229 2.3523 44 1 3.6041 2.4214 2.4283 45 1 4.1066 0.6736 0.1848 46 1 3.9955 2.4778 0.0083 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029425849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:18 Heat of formation + Delta-G solvation = 17.843438 kcal Electronic energy + Delta-G solvation = -26132.317040 eV Core-core repulsion = 22830.342012 eV Total energy + Delta-G solvation = -3301.975028 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.72153 -38.74386 -36.94201 -33.56751 -32.42704 -32.30248 -30.57015 -29.26386 -26.97957 -25.75343 -25.32413 -23.69731 -23.61970 -22.48759 -20.41982 -19.65947 -18.74688 -18.19939 -16.84607 -15.84346 -15.64258 -15.49451 -15.10352 -14.63282 -14.10038 -13.85394 -13.73865 -13.29214 -13.06254 -12.92124 -12.61910 -12.40963 -12.19898 -11.80440 -11.72661 -11.64473 -11.46460 -11.30692 -11.23360 -10.99481 -10.88973 -10.73376 -10.70105 -10.35140 -10.22482 -10.13525 -9.91426 -9.85227 -9.55155 -9.54681 -9.02870 -8.69125 -7.96199 -6.87251 -5.89671 -3.17920 3.20993 3.33986 3.41290 3.42887 3.66743 4.41171 4.57314 4.63532 4.85085 4.89788 5.05852 5.22837 5.29399 5.38158 5.46362 5.56924 5.68787 5.73632 5.74620 5.79728 5.84687 5.91500 5.93627 5.96374 5.99987 6.07868 6.11352 6.17760 6.19783 6.30887 6.37352 6.41961 6.45036 6.53483 6.55384 6.65744 6.67300 6.77197 6.89595 7.03632 7.24962 7.44572 7.64489 8.08700 8.17174 8.81571 9.02523 9.66130 10.43267 11.25048 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.021236 B = 0.005731 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.183624 B = 4884.745779 C = 5334.010014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.099 4.099 4 C 0.524 3.476 5 O -0.567 6.567 6 N -0.592 5.592 7 C 0.100 3.900 8 C 0.169 3.831 9 H 0.111 0.889 10 C -0.137 4.137 11 C -0.122 4.122 12 C 0.134 3.866 13 H 0.076 0.924 14 C 0.103 3.897 15 N -0.583 5.583 16 C -0.226 4.226 17 H 0.076 0.924 18 C -0.003 4.003 19 N -0.911 5.911 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C -0.111 4.111 25 C -0.142 4.142 26 C -0.124 4.124 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.254 0.746 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.218 -0.743 9.661 11.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.102 4.102 4 C 0.312 3.688 5 O -0.448 6.448 6 N -0.323 5.323 7 C -0.022 4.022 8 C 0.061 3.939 9 H 0.129 0.871 10 C -0.176 4.176 11 C -0.161 4.161 12 C 0.025 3.975 13 H 0.094 0.906 14 C -0.021 4.021 15 N -0.304 5.304 16 C -0.353 4.353 17 H 0.094 0.906 18 C -0.200 4.200 19 N -0.557 5.557 20 Si 0.737 3.263 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C -0.149 4.149 25 C -0.179 4.179 26 C -0.162 4.162 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.380 -0.382 9.551 11.492 hybrid contribution 0.795 -0.105 -0.753 1.100 sum -5.586 -0.488 8.798 10.432 Atomic orbital electron populations 1.21739 0.95319 1.01200 1.02423 1.21494 0.96425 0.93033 1.03107 1.22047 0.97963 0.96672 0.93529 1.20276 0.81132 0.82982 0.84442 1.90593 1.31825 1.36604 1.85760 1.48636 1.42839 1.31117 1.09720 1.23097 0.92831 0.86932 0.99379 1.21754 0.92037 0.94024 0.86099 0.87117 1.22677 0.98652 0.97442 0.98871 1.22482 0.97447 0.96993 0.99209 1.22002 0.88643 0.91891 0.94936 0.90645 1.22291 1.00575 0.93603 0.85666 1.45169 1.21027 1.33049 1.31165 1.18976 0.92085 1.27317 0.96963 0.90585 1.24738 0.96621 1.02067 0.96561 1.69903 1.24145 1.42468 1.19163 0.86209 0.80573 0.77452 0.82039 1.21644 1.21598 1.20709 1.22836 0.97385 1.00313 0.94321 1.22877 0.97345 1.01283 0.96432 1.22994 0.94366 1.03053 0.95756 0.92725 0.92551 0.92542 0.90108 0.91099 0.90986 0.90054 0.92853 0.92850 0.92778 0.92629 0.92205 0.90896 0.93609 0.89740 0.91146 0.90114 0.91461 0.90406 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.60 37.16 0.36 -1.53 16 2 C -0.10 -1.33 4.90 -26.73 -0.13 -1.46 16 3 C -0.10 -1.44 0.27 -154.84 -0.04 -1.48 16 4 C 0.52 9.58 5.88 -10.98 -0.06 9.52 16 5 O -0.57 -11.90 15.85 5.56 0.09 -11.81 16 6 N -0.59 -11.28 2.36 -169.98 -0.40 -11.68 16 7 C 0.10 1.96 4.57 -2.17 -0.01 1.95 16 8 C 0.17 3.61 3.08 -65.67 -0.20 3.40 16 9 H 0.11 2.67 6.52 -51.93 -0.34 2.34 16 10 C -0.14 -2.54 6.20 -25.25 -0.16 -2.69 16 11 C -0.12 -2.24 6.22 -25.11 -0.16 -2.39 16 12 C 0.13 2.70 4.28 -65.53 -0.28 2.42 16 13 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 14 C 0.10 2.05 5.98 -3.22 -0.02 2.03 16 15 N -0.58 -13.66 2.81 -152.46 -0.43 -14.08 16 16 C -0.23 -5.85 10.34 -15.06 -0.16 -6.00 16 17 H 0.08 1.95 7.88 -52.49 -0.41 1.53 16 18 C 0.00 -0.07 5.33 -17.43 -0.09 -0.16 16 19 N -0.91 -24.12 10.61 55.49 0.59 -23.53 16 20 Si 0.91 20.92 29.59 -169.99 -5.03 15.89 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 C -0.11 -1.45 6.71 -25.82 -0.17 -1.62 16 25 C -0.14 -1.59 7.74 -25.83 -0.20 -1.79 16 26 C -0.12 -1.68 5.75 -25.92 -0.15 -1.83 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.68 6.68 -51.93 -0.35 0.33 16 29 H 0.06 0.84 7.70 -51.93 -0.40 0.44 16 30 H 0.08 1.13 4.26 -51.93 -0.22 0.91 16 31 H 0.07 0.77 7.31 -51.93 -0.38 0.40 16 32 H 0.07 1.24 3.49 -51.93 -0.18 1.06 16 33 H 0.08 1.86 7.75 -51.93 -0.40 1.46 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.91 6.34 -51.93 -0.33 0.58 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 1.01 7.86 -51.93 -0.41 0.60 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.42 7.08 -51.93 -0.37 1.05 16 40 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 41 H 0.08 1.22 7.89 -51.93 -0.41 0.81 16 42 H 0.07 0.85 6.76 -51.93 -0.35 0.49 16 43 H 0.08 0.79 7.61 -51.93 -0.40 0.39 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.03 7.51 -51.93 -0.39 0.64 16 46 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -28.04 337.29 -9.00 -37.04 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.43 Total: 4.74 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.48 Total: -1.65 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.24 Total: -49.30 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.04 -9.00 -37.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029425849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.887 kcal (2) G-P(sol) polarization free energy of solvation -28.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds