Wall clock time and date at job start Tue Mar 31 2020 06:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 C 1.50697 * 112.85115 * 295.26430 * 3 2 1 5 5 O 1.21277 * 120.00527 * 105.57039 * 4 3 2 6 6 N 1.34782 * 119.99521 * 285.57076 * 4 3 2 7 7 C 1.49041 * 120.07008 * 8.13178 * 6 4 3 8 8 C 1.53888 * 107.74894 * 133.48712 * 7 6 4 9 9 H 1.09002 * 112.09252 * 180.92022 * 8 7 6 10 10 C 1.54542 * 107.82782 * 304.87781 * 8 7 6 11 11 C 1.54285 * 104.94351 * 89.62731 * 10 8 7 12 12 C 1.54799 * 104.72476 * 0.08526 * 11 10 8 13 13 H 1.09008 * 112.18499 * 146.35937 * 12 11 10 14 14 C 1.47167 * 120.70728 * 186.90042 * 6 4 3 15 15 N 1.48303 * 107.74768 * 56.99511 * 8 7 6 16 16 C 1.36940 * 128.07872 * 106.50266 * 15 8 7 17 17 H 1.07995 * 120.00263 * 166.76187 * 16 15 8 18 18 C 1.38811 * 119.99769 * 346.75975 * 16 15 8 19 19 N 1.31625 * 119.99945 * 343.18398 * 18 16 15 20 20 Si 1.86798 * 120.00067 * 163.18058 * 18 16 15 21 21 H 1.48503 * 109.47170 * 90.00288 * 20 18 16 22 22 H 1.48501 * 109.47266 * 210.00264 * 20 18 16 23 23 H 1.48504 * 109.46965 * 330.00094 * 20 18 16 24 24 C 1.53790 * 113.61171 * 66.45667 * 3 2 1 25 25 C 1.53954 * 87.01766 * 89.23236 * 24 3 2 26 26 C 1.53778 * 87.11614 * 25.36118 * 25 24 3 27 27 H 1.08999 * 109.47241 * 184.63882 * 1 2 3 28 28 H 1.08997 * 109.47114 * 304.64341 * 1 2 3 29 29 H 1.08996 * 109.47135 * 64.63965 * 1 2 3 30 30 H 1.08997 * 109.47059 * 239.99378 * 2 1 3 31 31 H 1.09003 * 109.46899 * 119.99639 * 2 1 3 32 32 H 1.08994 * 111.22265 * 13.15558 * 7 6 4 33 33 H 1.09007 * 108.53961 * 252.27397 * 7 6 4 34 34 H 1.08997 * 110.36724 * 208.52476 * 10 8 7 35 35 H 1.08999 * 110.36587 * 330.73282 * 10 8 7 36 36 H 1.09000 * 110.36070 * 118.89646 * 11 10 8 37 37 H 1.08996 * 110.36412 * 241.21413 * 11 10 8 38 38 H 1.09003 * 109.74801 * 107.61233 * 14 6 4 39 39 H 1.09000 * 109.78823 * 346.90735 * 14 6 4 40 40 H 0.97001 * 119.99529 * 180.02562 * 19 18 16 41 41 H 1.09007 * 113.61137 * 203.74696 * 24 3 2 42 42 H 1.08998 * 113.61636 * 334.65322 * 24 3 2 43 43 H 1.08997 * 113.53749 * 270.80759 * 25 24 3 44 44 H 1.09002 * 113.66704 * 139.93607 * 25 24 3 45 45 H 1.08998 * 113.61873 * 220.09105 * 26 25 24 46 46 H 1.08998 * 113.69092 * 89.19689 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6763 2.1918 -1.2559 5 8 0.7980 3.0277 -1.2305 6 7 2.3272 1.9329 -2.4074 7 6 3.2764 0.7866 -2.4872 8 6 2.9714 0.0143 -3.7829 9 1 3.6189 -0.8540 -3.9047 10 6 1.4751 -0.3718 -3.7624 11 6 0.7491 0.8136 -4.4318 12 6 1.8764 1.8091 -4.7983 13 1 1.6626 2.3523 -5.7189 14 6 2.0926 2.7559 -3.6046 15 7 3.0904 0.9653 -4.9146 16 6 4.0880 1.0452 -5.8493 17 1 3.9477 1.6403 -6.7395 18 6 5.2798 0.3612 -5.6525 19 7 5.5926 -0.0845 -4.4541 20 14 6.4395 0.0732 -7.0883 21 1 7.3945 1.2061 -7.1881 22 1 7.1904 -1.1896 -6.8725 23 1 5.6556 -0.0257 -8.3456 24 6 1.7147 2.2108 1.2918 25 6 3.0510 1.6843 1.8462 26 6 3.5228 1.5716 0.3869 27 1 -0.3633 -1.0243 0.0831 28 1 -0.3633 0.5842 0.8454 29 1 -0.3633 0.4401 -0.9286 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.1676 0.1237 -1.6289 33 1 4.2924 1.1798 -2.5233 34 1 1.3117 -1.2869 -4.3316 35 1 1.1298 -0.4975 -2.7362 36 1 0.2288 0.4813 -5.3301 37 1 0.0483 1.2720 -3.7341 38 1 2.9587 3.3911 -3.7904 39 1 1.2067 3.3742 -3.4596 40 1 6.4256 -0.5621 -4.3166 41 1 1.6918 3.2929 1.1622 42 1 0.8409 1.8281 1.8193 43 1 2.9637 0.7229 2.3523 44 1 3.6041 2.4214 2.4283 45 1 4.1066 0.6736 0.1848 46 1 3.9955 2.4778 0.0083 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029425849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:17 Heat of formation + Delta-G solvation = 3.935331 kcal Electronic energy + Delta-G solvation = -26132.920140 eV Core-core repulsion = 22830.342012 eV Total energy + Delta-G solvation = -3302.578128 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.08655 -40.19631 -38.39798 -35.27641 -34.17640 -33.39071 -32.15895 -31.06201 -28.39875 -27.10613 -26.52908 -25.38079 -25.19667 -23.57320 -21.81727 -21.28033 -20.39387 -19.56910 -18.34532 -17.44382 -17.07884 -16.94589 -16.47771 -16.26667 -15.63030 -15.33752 -14.96944 -14.73793 -14.69265 -14.45549 -14.05349 -13.61184 -13.54197 -13.32287 -13.23374 -13.17631 -12.90245 -12.75023 -12.55095 -12.52762 -12.27958 -12.17145 -12.03104 -11.82514 -11.79022 -11.50251 -11.38941 -11.24186 -11.15548 -11.01134 -10.73070 -10.29903 -9.64699 -8.71612 -7.87517 -5.16134 1.48640 1.51414 1.59106 1.75288 2.15831 2.52223 3.31878 3.42513 3.49660 3.52147 3.78118 3.87542 3.92218 4.07967 4.12799 4.20510 4.33642 4.34570 4.46032 4.51601 4.54257 4.58703 4.72201 4.77733 4.80870 4.83443 4.90049 4.98087 5.00031 5.03798 5.06179 5.07808 5.12363 5.16725 5.19410 5.31723 5.34592 5.38235 5.47580 5.54161 5.57026 5.61903 5.83719 6.21424 6.64466 7.07846 7.31012 7.72631 8.52681 9.25547 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.021236 B = 0.005731 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.183624 B = 4884.745779 C = 5334.010014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.103 4.103 4 C 0.522 3.478 5 O -0.595 6.595 6 N -0.594 5.594 7 C 0.121 3.879 8 C 0.164 3.836 9 H 0.082 0.918 10 C -0.127 4.127 11 C -0.111 4.111 12 C 0.129 3.871 13 H 0.079 0.921 14 C 0.108 3.892 15 N -0.602 5.602 16 C -0.239 4.239 17 H 0.072 0.928 18 C -0.047 4.047 19 N -0.927 5.927 20 Si 0.965 3.035 21 H -0.292 1.292 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.111 4.111 25 C -0.121 4.121 26 C -0.130 4.130 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.250 0.750 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.087 -1.948 11.193 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 C -0.106 4.106 4 C 0.312 3.688 5 O -0.477 6.477 6 N -0.326 5.326 7 C -0.002 4.002 8 C 0.057 3.943 9 H 0.100 0.900 10 C -0.166 4.166 11 C -0.150 4.150 12 C 0.022 3.978 13 H 0.097 0.903 14 C -0.017 4.017 15 N -0.323 5.323 16 C -0.368 4.368 17 H 0.090 0.910 18 C -0.242 4.242 19 N -0.574 5.574 20 Si 0.794 3.206 21 H -0.219 1.219 22 H -0.219 1.219 23 H -0.203 1.203 24 C -0.148 4.148 25 C -0.158 4.158 26 C -0.168 4.168 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.125 0.875 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.269 -1.583 11.091 13.355 hybrid contribution 1.045 0.348 -1.236 1.655 sum -6.225 -1.235 9.856 11.722 Atomic orbital electron populations 1.21720 0.94951 1.02440 1.01247 1.21522 0.96680 0.91535 1.03996 1.22252 0.98823 0.97686 0.91871 1.21021 0.80136 0.82629 0.85046 1.90572 1.33039 1.37896 1.86207 1.48655 1.42960 1.30965 1.09980 1.22781 0.90839 0.86905 0.99690 1.21732 0.93406 0.92998 0.86182 0.89983 1.22584 0.96285 0.97611 1.00131 1.22380 0.96610 0.96203 0.99820 1.22153 0.88270 0.92193 0.95229 0.90283 1.22122 0.99694 0.93555 0.86336 1.45341 1.21358 1.34225 1.31423 1.19199 0.92921 1.27167 0.97491 0.90999 1.25363 0.97953 1.02445 0.98457 1.70037 1.24203 1.42928 1.20208 0.85308 0.78715 0.76752 0.79777 1.21944 1.21860 1.20287 1.22831 0.99303 0.99073 0.93634 1.22844 0.95410 1.02768 0.94804 1.23002 0.93601 1.02239 0.97926 0.90575 0.91910 0.95228 0.91271 0.88002 0.88345 0.93830 0.92272 0.91079 0.91506 0.92212 0.94376 0.90504 0.94100 0.91716 0.89551 0.87491 0.90330 0.90018 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.60 71.98 0.69 -2.57 16 2 C -0.10 -2.27 4.90 30.59 0.15 -2.12 16 3 C -0.10 -2.82 0.27 -52.40 -0.01 -2.84 16 4 C 0.52 18.87 5.88 87.66 0.52 19.39 16 5 O -0.59 -24.86 15.85 -3.02 -0.05 -24.91 16 6 N -0.59 -22.82 2.36 -810.09 -1.91 -24.73 16 7 C 0.12 4.75 4.57 86.19 0.39 5.15 16 8 C 0.16 7.06 3.08 45.47 0.14 7.20 16 9 H 0.08 4.03 6.52 -2.39 -0.02 4.02 16 10 C -0.13 -4.54 6.20 31.55 0.20 -4.34 16 11 C -0.11 -3.94 6.22 31.64 0.20 -3.74 16 12 C 0.13 5.24 4.28 45.55 0.19 5.44 16 13 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 14 C 0.11 4.38 5.98 86.55 0.52 4.90 16 15 N -0.60 -28.61 2.81 -636.26 -1.79 -30.40 16 16 C -0.24 -12.62 10.34 84.03 0.87 -11.75 16 17 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 18 C -0.05 -2.48 5.33 84.86 0.45 -2.03 16 19 N -0.93 -50.11 10.61 21.65 0.23 -49.89 16 20 Si 0.97 43.58 29.59 68.60 2.03 45.61 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 C -0.11 -2.64 6.71 31.18 0.21 -2.43 16 25 C -0.12 -2.31 7.74 31.18 0.24 -2.07 16 26 C -0.13 -3.33 5.75 31.12 0.18 -3.15 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.31 6.68 -2.39 -0.02 1.30 16 29 H 0.03 0.81 7.70 -2.39 -0.02 0.79 16 30 H 0.07 1.74 4.26 -2.39 -0.01 1.73 16 31 H 0.10 1.74 7.31 -2.39 -0.02 1.72 16 32 H 0.10 3.31 3.49 -2.39 -0.01 3.30 16 33 H 0.04 2.05 7.75 -2.38 -0.02 2.03 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 2.28 6.34 -2.39 -0.02 2.26 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.06 2.08 7.86 -2.39 -0.02 2.06 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 3.04 7.08 -2.39 -0.02 3.02 16 40 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 41 H 0.06 1.80 7.89 -2.38 -0.02 1.79 16 42 H 0.09 1.79 6.76 -2.39 -0.02 1.77 16 43 H 0.11 1.55 7.61 -2.39 -0.02 1.53 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 2.02 7.51 -2.39 -0.02 2.00 16 46 H 0.06 1.82 8.09 -2.39 -0.02 1.80 16 Total: -1.00 -61.31 337.29 4.41 -56.90 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.97 Total: 22.38 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 4.93 Total: 5.03 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -3.47 Total: -105.01 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.91 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -61.31 4.41 -56.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029425849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.838 kcal (2) G-P(sol) polarization free energy of solvation -61.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds