Wall clock time and date at job start Tue Mar 31 2020 07:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99727 * 2 1 4 4 C 1.52999 * 109.47143 * 6.33742 * 3 2 1 5 5 C 1.52998 * 109.47159 * 246.33582 * 3 2 1 6 6 C 1.52995 * 109.47244 * 305.40967 * 5 3 2 7 7 C 1.50702 * 109.47003 * 126.33694 * 3 2 1 8 8 O 1.21277 * 119.99793 * 124.34893 * 7 3 2 9 9 N 1.34780 * 119.99900 * 304.34520 * 7 3 2 10 10 C 1.47615 * 120.90147 * 354.32325 * 9 7 3 11 11 C 1.53888 * 107.50518 * 132.49180 * 10 9 7 12 12 H 1.08991 * 112.09610 * 182.66281 * 11 10 9 13 13 C 1.54550 * 108.36448 * 307.00361 * 11 10 9 14 14 C 1.54287 * 104.84640 * 89.29558 * 13 11 10 15 15 C 1.54963 * 104.80808 * 359.81323 * 14 13 11 16 16 H 1.09006 * 112.25138 * 146.61089 * 15 14 13 17 17 C 1.47160 * 120.70688 * 175.00694 * 9 7 3 18 18 N 1.48308 * 104.15181 * 24.99298 * 15 14 13 19 19 C 1.36934 * 128.07642 * 139.04647 * 18 15 14 20 20 H 1.08003 * 120.00238 * 29.97884 * 19 18 15 21 21 C 1.38807 * 119.99751 * 209.98351 * 19 18 15 22 22 N 1.31629 * 119.99836 * 196.34981 * 21 19 18 23 23 Si 1.86795 * 120.00223 * 16.34789 * 21 19 18 24 24 H 1.48499 * 109.47234 * 273.50075 * 23 21 19 25 25 H 1.48496 * 109.47004 * 33.50726 * 23 21 19 26 26 H 1.48507 * 109.46994 * 153.50346 * 23 21 19 27 27 H 1.08003 * 119.99363 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00164 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.00164 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47146 * 182.01054 * 4 3 2 31 31 H 1.09005 * 109.47154 * 302.00622 * 4 3 2 32 32 H 1.09002 * 109.47382 * 62.00525 * 4 3 2 33 33 H 1.08996 * 109.47248 * 65.41002 * 5 3 2 34 34 H 1.08997 * 109.46927 * 185.40934 * 5 3 2 35 35 H 1.09001 * 109.47681 * 59.99597 * 6 5 3 36 36 H 1.08995 * 109.47617 * 180.02562 * 6 5 3 37 37 H 1.09007 * 109.47261 * 299.99720 * 6 5 3 38 38 H 1.09002 * 109.38496 * 13.37574 * 10 9 7 39 39 H 1.08999 * 110.63462 * 252.31557 * 10 9 7 40 40 H 1.08996 * 110.36292 * 208.13853 * 13 11 10 41 41 H 1.08993 * 110.36433 * 330.45453 * 13 11 10 42 42 H 1.09002 * 110.35936 * 118.84904 * 14 13 11 43 43 H 1.08994 * 110.36155 * 241.04851 * 14 13 11 44 44 H 1.08995 * 109.75213 * 107.61532 * 17 9 7 45 45 H 1.09001 * 109.79219 * 346.90086 * 17 9 7 46 46 H 0.97002 * 119.99798 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0768 2.4636 0.1592 5 6 2.8199 1.4574 -1.3212 6 6 3.7075 0.2314 -1.5449 7 6 3.0437 1.3192 1.1446 8 8 4.2211 1.5181 0.9321 9 7 2.6119 1.1110 2.4042 10 6 1.1711 0.9909 2.7016 11 6 0.9849 -0.2462 3.5977 12 1 -0.0643 -0.4329 3.8262 13 6 1.6551 -1.4544 2.9052 14 6 3.1129 -1.4411 3.4105 15 6 3.1914 -0.2197 4.3610 16 1 3.8791 -0.3856 5.1903 17 6 3.5671 1.0127 3.5194 18 7 1.7946 -0.0278 4.8210 19 6 1.3554 0.2843 6.0798 20 1 1.9766 0.8738 6.7379 21 6 0.1117 -0.1572 6.5103 22 7 -0.4518 0.3905 7.5662 23 14 -0.7621 -1.5285 5.5910 24 1 -1.5483 -0.9512 4.4712 25 1 0.2415 -2.4809 5.0519 26 1 -1.6745 -2.2436 6.5192 27 1 -0.5399 -0.9354 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.6179 3.4092 0.1234 31 1 0.3462 2.4323 -0.6491 32 1 0.5635 2.3747 1.1167 33 1 2.1063 1.5436 -2.1405 34 1 3.4400 2.3529 -1.2837 35 1 3.0874 -0.6642 -1.5823 36 1 4.2467 0.3400 -2.4859 37 1 4.4212 0.1451 -0.7255 38 1 0.6194 0.8579 1.7709 39 1 0.8106 1.8791 3.2205 40 1 1.1610 -2.3811 3.1971 41 1 1.6280 -1.3340 1.8223 42 1 3.3354 -2.3613 3.9508 43 1 3.8025 -1.3160 2.5758 44 1 3.5086 1.9105 4.1347 45 1 4.5787 0.8983 3.1300 46 1 -1.3210 0.0822 7.8668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029453358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:24 Heat of formation + Delta-G solvation = 38.318517 kcal Electronic energy + Delta-G solvation = -26325.598237 eV Core-core repulsion = 23024.511075 eV Total energy + Delta-G solvation = -3301.087161 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.94363 -38.58874 -36.61781 -34.02073 -32.47763 -31.97739 -30.78116 -29.97119 -29.50511 -26.77727 -24.76820 -24.31721 -23.33252 -22.42273 -20.75572 -20.11042 -18.97432 -18.24797 -17.18692 -16.43314 -16.09014 -15.55310 -15.15823 -14.80377 -14.42003 -14.04225 -13.65213 -13.53648 -13.33541 -13.14951 -13.08053 -12.71537 -12.34761 -12.18269 -12.06673 -11.88803 -11.79865 -11.73599 -11.30824 -11.14550 -11.00669 -10.87241 -10.78232 -10.57966 -10.51873 -10.25372 -9.90781 -9.83231 -9.71785 -9.52681 -8.85028 -8.69711 -8.24951 -7.00201 -6.03540 -3.43071 2.14437 2.93305 3.19633 3.35587 3.40303 3.44352 4.43861 4.59834 4.62947 4.75996 4.82566 4.96768 5.18933 5.21833 5.36637 5.38957 5.42864 5.50549 5.56922 5.59589 5.61348 5.62398 5.68300 5.81790 5.87656 5.90330 5.99523 6.04353 6.10588 6.19156 6.21358 6.25248 6.32400 6.38321 6.39640 6.41559 6.46224 6.49987 6.62278 6.66238 6.77593 7.01717 7.66619 7.85857 8.25935 8.51331 8.71777 9.57401 10.18352 11.12596 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.022475 B = 0.006329 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.552185 B = 4423.255170 C = 4767.146825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.136 4.136 3 C -0.052 4.052 4 C -0.158 4.158 5 C -0.090 4.090 6 C -0.157 4.157 7 C 0.525 3.475 8 O -0.552 6.552 9 N -0.586 5.586 10 C 0.075 3.925 11 C 0.118 3.882 12 H 0.085 0.915 13 C -0.136 4.136 14 C -0.125 4.125 15 C 0.136 3.864 16 H 0.087 0.913 17 C 0.103 3.897 18 N -0.596 5.596 19 C -0.238 4.238 20 H 0.089 0.911 21 C 0.029 3.971 22 N -0.908 5.908 23 Si 0.881 3.119 24 H -0.284 1.284 25 H -0.264 1.264 26 H -0.303 1.303 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -0.544 -16.751 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.154 4.154 3 C -0.055 4.055 4 C -0.215 4.215 5 C -0.127 4.127 6 C -0.214 4.214 7 C 0.313 3.687 8 O -0.431 6.431 9 N -0.317 5.317 10 C -0.049 4.049 11 C 0.011 3.989 12 H 0.102 0.898 13 C -0.175 4.175 14 C -0.164 4.164 15 C 0.028 3.972 16 H 0.105 0.895 17 C -0.022 4.022 18 N -0.319 5.319 19 C -0.365 4.365 20 H 0.106 0.894 21 C -0.171 4.171 22 N -0.551 5.551 23 Si 0.713 3.287 24 H -0.212 1.212 25 H -0.189 1.189 26 H -0.231 1.231 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.134 0.866 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.982 -0.410 -16.538 16.809 hybrid contribution -0.786 -0.801 -0.266 1.153 sum 2.196 -1.210 -16.804 16.990 Atomic orbital electron populations 1.24027 0.95836 1.02737 1.00381 1.22699 0.95831 0.97108 0.99723 1.19929 0.95509 0.95013 0.95097 1.22222 0.98758 0.97017 1.03460 1.21283 0.97924 0.99818 0.93720 1.21894 1.00097 0.97266 1.02159 1.20214 0.88683 0.76416 0.83420 1.90611 1.17903 1.50529 1.84100 1.48096 1.07901 1.69383 1.06289 1.23141 0.80431 1.00503 1.00847 1.22261 0.96873 0.92181 0.87557 0.89793 1.22725 0.96502 0.98744 0.99497 1.22526 0.96210 0.98950 0.98684 1.22137 0.89237 0.91435 0.94356 0.89455 1.22315 0.92268 0.99901 0.87673 1.45425 1.00168 1.81955 1.04318 1.18599 1.02696 1.27198 0.88046 0.89365 1.25262 0.97748 0.98129 0.95955 1.69777 1.16723 1.42169 1.26406 0.86939 0.79269 0.84435 0.78081 1.21240 1.18897 1.23082 0.87885 0.87442 0.86606 0.91869 0.91192 0.90562 0.91747 0.91082 0.93152 0.93170 0.90967 0.88620 0.91220 0.92349 0.91638 0.92331 0.92491 0.91740 0.90221 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 11.96 29.01 0.35 -1.68 16 2 C -0.14 -1.59 4.38 -36.03 -0.16 -1.75 16 3 C -0.05 -0.66 0.52 -156.81 -0.08 -0.74 16 4 C -0.16 -1.77 6.99 37.16 0.26 -1.51 16 5 C -0.09 -1.04 4.63 -26.73 -0.12 -1.17 16 6 C -0.16 -1.84 9.30 37.15 0.35 -1.50 16 7 C 0.53 8.45 6.12 -10.98 -0.07 8.38 16 8 O -0.55 -10.20 13.66 5.56 0.08 -10.12 16 9 N -0.59 -9.93 2.22 -171.16 -0.38 -10.31 16 10 C 0.07 1.29 4.09 -2.97 -0.01 1.28 16 11 C 0.12 2.36 2.84 -65.66 -0.19 2.18 16 12 H 0.08 1.84 3.48 -51.93 -0.18 1.66 16 13 C -0.14 -2.40 5.97 -25.24 -0.15 -2.55 16 14 C -0.12 -2.16 6.21 -25.02 -0.16 -2.31 16 15 C 0.14 2.60 4.33 -65.44 -0.28 2.32 16 16 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 17 C 0.10 1.84 5.88 -3.22 -0.02 1.82 16 18 N -0.60 -13.48 2.44 -152.35 -0.37 -13.85 16 19 C -0.24 -6.41 10.73 -15.06 -0.16 -6.58 16 20 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 21 C 0.03 0.80 5.48 -17.43 -0.10 0.71 16 22 N -0.91 -27.09 13.97 55.49 0.78 -26.31 16 23 Si 0.88 21.44 24.76 -169.99 -4.21 17.23 16 24 H -0.28 -6.57 6.38 56.52 0.36 -6.21 16 25 H -0.26 -6.25 5.87 56.52 0.33 -5.92 16 26 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 27 H 0.10 0.99 8.06 -52.48 -0.42 0.57 16 28 H 0.11 1.03 5.67 -52.49 -0.30 0.73 16 29 H 0.12 1.39 6.21 -52.49 -0.33 1.06 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.63 7.07 -51.93 -0.37 0.27 16 32 H 0.08 0.92 4.86 -51.93 -0.25 0.67 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 35 H 0.05 0.54 6.61 -51.93 -0.34 0.20 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 1.03 6.15 -51.93 -0.32 0.71 16 38 H 0.10 1.39 1.95 -51.93 -0.10 1.29 16 39 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 40 H 0.06 1.07 6.92 -51.93 -0.36 0.71 16 41 H 0.07 1.00 4.57 -51.93 -0.24 0.77 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.93 7.85 -51.93 -0.41 0.52 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.08 1.38 7.16 -51.93 -0.37 1.01 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 323.57 15.07 4.88 4.88 Total: -1.00 -30.10 323.57 -6.80 -36.89 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.02 Total: 4.70 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.54 Total: -3.11 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.02 Total: -50.47 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.21 Total: 17.23 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.10 -6.80 -36.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029453358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.213 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds