Wall clock time and date at job start Tue Mar 31 2020 06:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47271 * 2 1 4 4 C 1.53006 * 115.54964 * 325.66442 * 3 2 1 5 5 C 1.53075 * 117.49736 * 111.39695 * 3 2 1 6 6 C 1.53002 * 117.49824 * 180.02562 * 3 2 1 7 7 H 1.08995 * 117.50180 * 0.02562 * 6 3 2 8 8 C 1.50700 * 117.49886 * 145.01926 * 6 3 2 9 9 O 1.21279 * 120.00189 * 0.18754 * 8 6 3 10 10 N 1.34778 * 119.99945 * 179.91174 * 8 6 3 11 11 C 1.47162 * 120.70903 * 179.97438 * 10 8 6 12 12 C 1.53887 * 108.02917 * 132.75504 * 11 10 8 13 13 H 1.09000 * 112.09733 * 181.91274 * 12 11 10 14 14 C 1.54547 * 107.83169 * 306.50494 * 12 11 10 15 15 C 1.54286 * 104.84939 * 89.07418 * 14 12 11 16 16 C 1.54550 * 104.84638 * 359.97438 * 15 14 12 17 17 H 1.08996 * 112.17895 * 146.41186 * 16 15 14 18 18 C 1.47158 * 120.71182 * 359.71892 * 10 8 6 19 19 N 1.48306 * 107.20861 * 58.36389 * 12 11 10 20 20 C 1.36937 * 128.07903 * 106.69793 * 19 12 11 21 21 H 1.07996 * 119.99780 * 15.01158 * 20 19 12 22 22 C 1.38814 * 120.00056 * 195.01000 * 20 19 12 23 23 N 1.31620 * 120.00250 * 9.29433 * 22 20 19 24 24 Si 1.86797 * 119.99997 * 189.29215 * 22 20 19 25 25 H 1.48501 * 109.47064 * 94.21925 * 24 22 20 26 26 H 1.48495 * 109.47319 * 214.21879 * 24 22 20 27 27 H 1.48506 * 109.47166 * 334.22043 * 24 22 20 28 28 H 1.09007 * 109.46916 * 300.00619 * 1 2 3 29 29 H 1.08997 * 109.46692 * 60.00074 * 1 2 3 30 30 H 1.08994 * 109.47435 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47175 * 239.99944 * 2 1 3 32 32 H 1.09003 * 109.47284 * 119.99577 * 2 1 3 33 33 H 1.08990 * 109.47417 * 274.33295 * 4 3 2 34 34 H 1.09004 * 109.46670 * 34.33990 * 4 3 2 35 35 H 1.09004 * 109.46948 * 154.32760 * 4 3 2 36 36 H 1.08997 * 117.48925 * 0.02562 * 5 3 2 37 37 H 1.09003 * 117.51350 * 214.96268 * 5 3 2 38 38 H 1.08994 * 109.75347 * 252.39187 * 11 10 8 39 39 H 1.09004 * 109.75147 * 13.07452 * 11 10 8 40 40 H 1.08998 * 110.36191 * 207.91494 * 14 12 11 41 41 H 1.08993 * 110.36480 * 330.22733 * 14 12 11 42 42 H 1.09000 * 110.35847 * 241.15816 * 15 14 12 43 43 H 1.08992 * 110.45740 * 118.88673 * 15 14 12 44 44 H 1.09009 * 109.74751 * 346.87935 * 18 10 8 45 45 H 1.09002 * 109.74683 * 107.60699 * 18 10 8 46 46 H 0.96993 * 120.00057 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1853 2.4446 -0.7786 5 6 2.7427 1.9437 1.2642 6 6 3.5551 1.6561 -0.0006 7 1 4.1884 0.7690 -0.0014 8 6 4.0909 2.8379 -0.7670 9 8 3.3281 3.5788 -1.3502 10 7 5.4173 3.0746 -0.7998 11 6 5.9575 4.2237 -1.5438 12 6 6.9656 4.9484 -0.6346 13 1 7.3838 5.8351 -1.1110 14 6 6.2545 5.2683 0.6998 15 6 6.4978 4.0281 1.5848 16 6 7.3332 3.0712 0.7044 17 1 8.0420 2.4862 1.2905 18 6 6.3559 2.1928 -0.0878 19 7 8.0118 3.9636 -0.2669 20 6 9.3025 3.8941 -0.7190 21 1 9.7403 4.7365 -1.2339 22 6 10.0481 2.7411 -0.5156 23 7 9.4662 1.6537 -0.0557 24 14 11.8772 2.7325 -0.8945 25 1 12.6403 3.0388 0.3421 26 1 12.2716 1.3934 -1.4006 27 1 12.1738 3.7587 -1.9261 28 1 -0.3633 0.5140 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.4778 2.4331 -1.8285 34 1 0.1340 2.1705 -0.6912 35 1 1.3352 3.4442 -0.3705 36 1 2.8416 1.2453 2.0953 37 1 2.5960 2.9875 1.5416 38 1 6.4596 3.8751 -2.4462 39 1 5.1478 4.9025 -1.8118 40 1 6.6922 6.1543 1.1599 41 1 5.1869 5.4135 0.5354 42 1 5.5497 3.5635 1.8554 43 1 7.0543 4.3027 2.4808 44 1 5.8066 1.5455 0.5960 45 1 6.9086 1.5867 -0.8057 46 1 9.9871 0.8479 0.0861 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029534561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:33 Heat of formation + Delta-G solvation = 21.176649 kcal Electronic energy + Delta-G solvation = -25220.701718 eV Core-core repulsion = 21918.871229 eV Total energy + Delta-G solvation = -3301.830489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.30378 -38.73261 -36.77952 -33.66841 -32.50930 -32.13118 -30.58708 -29.25730 -28.00215 -26.38890 -24.56089 -23.83521 -23.65398 -22.75580 -19.75460 -19.66490 -18.78230 -18.17291 -17.09888 -16.16000 -15.30555 -15.20376 -14.91744 -14.57286 -14.56069 -13.78290 -13.66772 -13.31964 -13.01574 -12.92116 -12.65807 -12.44587 -12.18828 -12.09608 -11.77464 -11.69104 -11.61074 -11.58577 -11.13824 -11.03730 -10.90121 -10.79853 -10.78868 -10.34183 -10.05169 -9.94199 -9.83423 -9.68828 -9.55015 -9.50423 -9.06441 -8.73140 -8.00149 -6.85390 -5.87408 -3.21580 2.97999 3.33987 3.40447 3.41475 3.57617 3.99280 4.40140 4.68758 4.77974 4.95083 5.06492 5.17178 5.26184 5.30440 5.34193 5.46463 5.61752 5.68831 5.73646 5.78769 5.81266 5.85910 5.91227 5.96841 6.02522 6.04692 6.10140 6.15021 6.18331 6.23804 6.31989 6.33224 6.41980 6.54998 6.63008 6.66962 6.70945 6.75206 6.89889 7.01180 7.28156 7.47200 7.64912 8.10478 8.17097 8.79124 9.03592 9.65458 10.42601 11.26108 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.004431 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.985315 B = 6318.263684 C = 6746.994599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.095 4.095 4 C -0.104 4.104 5 C -0.146 4.146 6 C -0.180 4.180 7 H 0.120 0.880 8 C 0.537 3.463 9 O -0.561 6.561 10 N -0.588 5.588 11 C 0.103 3.897 12 C 0.134 3.866 13 H 0.077 0.923 14 C -0.122 4.122 15 C -0.135 4.135 16 C 0.168 3.832 17 H 0.119 0.881 18 C 0.105 3.895 19 N -0.585 5.585 20 C -0.224 4.224 21 H 0.077 0.923 22 C -0.004 4.004 23 N -0.916 5.916 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.165 -1.528 2.899 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 C -0.095 4.095 4 C -0.160 4.160 5 C -0.184 4.184 6 C -0.201 4.201 7 H 0.138 0.862 8 C 0.325 3.675 9 O -0.442 6.442 10 N -0.318 5.318 11 C -0.022 4.022 12 C 0.025 3.975 13 H 0.095 0.905 14 C -0.162 4.162 15 C -0.175 4.175 16 C 0.060 3.940 17 H 0.136 0.864 18 C -0.019 4.019 19 N -0.306 5.306 20 C -0.352 4.352 21 H 0.095 0.905 22 C -0.200 4.200 23 N -0.563 5.563 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.272 -1.292 2.549 13.576 hybrid contribution 1.244 -0.242 -0.184 1.280 sum -12.028 -1.534 2.365 12.354 Atomic orbital electron populations 1.21818 0.95513 1.01176 1.02178 1.21083 0.95992 0.93393 1.02016 1.21571 0.91487 0.96632 0.99823 1.21411 0.96870 0.97311 1.00449 1.23158 1.02084 1.02472 0.90673 1.22364 0.95167 0.99852 1.02698 0.86216 1.19558 0.82054 0.85135 0.80748 1.90611 1.56649 1.49606 1.47284 1.48148 1.05388 1.28345 1.49965 1.22329 0.96871 0.88027 0.94949 1.21981 0.89045 0.93154 0.93310 0.90492 1.22451 0.98915 0.97766 0.97021 1.22638 0.99169 0.97276 0.98369 1.21787 0.91466 0.90985 0.89728 0.86351 1.22493 0.90503 0.92602 0.96282 1.45189 1.07595 1.30802 1.47062 1.19043 0.85730 0.98210 1.32182 0.90549 1.24808 0.98607 0.94953 1.01678 1.69821 1.34361 1.01117 1.50966 0.86100 0.84877 0.76893 0.77850 1.21626 1.21755 1.20628 0.92621 0.92060 0.93004 0.91581 0.91755 0.91656 0.93071 0.91905 0.88245 0.88575 0.92185 0.90811 0.92824 0.92768 0.93057 0.92873 0.92003 0.90181 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.92 37.16 0.33 -1.02 16 2 C -0.09 -0.92 6.12 -26.73 -0.16 -1.08 16 3 C -0.09 -1.21 2.47 -154.47 -0.38 -1.59 16 4 C -0.10 -1.41 7.73 37.16 0.29 -1.13 16 5 C -0.15 -1.86 9.53 -26.66 -0.25 -2.11 16 6 C -0.18 -2.68 4.62 -91.74 -0.42 -3.10 16 7 H 0.12 1.72 6.98 -51.93 -0.36 1.36 16 8 C 0.54 9.82 7.47 -10.98 -0.08 9.74 16 9 O -0.56 -11.25 12.57 5.56 0.07 -11.18 16 10 N -0.59 -11.33 2.26 -171.81 -0.39 -11.71 16 11 C 0.10 2.04 5.90 -3.22 -0.02 2.02 16 12 C 0.13 2.70 4.32 -65.66 -0.28 2.42 16 13 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 14 C -0.12 -2.24 6.18 -25.25 -0.16 -2.40 16 15 C -0.14 -2.54 6.19 -25.24 -0.16 -2.69 16 16 C 0.17 3.66 3.11 -65.88 -0.21 3.45 16 17 H 0.12 2.91 6.36 -51.93 -0.33 2.58 16 18 C 0.10 2.11 5.57 -3.46 -0.02 2.09 16 19 N -0.59 -13.86 2.81 -152.84 -0.43 -14.29 16 20 C -0.22 -5.83 10.37 -15.06 -0.16 -5.99 16 21 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 22 C 0.00 -0.10 5.42 -17.43 -0.09 -0.19 16 23 N -0.92 -24.50 10.42 55.49 0.58 -23.92 16 24 Si 0.91 21.06 29.56 -169.99 -5.03 16.03 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.56 6.45 -51.93 -0.33 0.22 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 33 H 0.06 1.01 7.26 -51.93 -0.38 0.63 16 34 H 0.05 0.58 5.58 -51.93 -0.29 0.29 16 35 H 0.06 0.95 7.01 -51.93 -0.36 0.59 16 36 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 37 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.41 7.11 -51.93 -0.37 1.05 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.97 7.84 -51.93 -0.41 0.56 16 42 H 0.05 0.89 7.83 -51.93 -0.41 0.49 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.10 5.94 -51.92 -0.31 0.79 16 45 H 0.08 1.87 7.82 -51.93 -0.41 1.46 16 46 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -27.79 346.20 -9.46 -37.25 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.71 Total: 4.20 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.78 Total: -1.59 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.24 Total: -49.92 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.07 Total: -11.18 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.79 -9.46 -37.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029534561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.430 kcal (2) G-P(sol) polarization free energy of solvation -27.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds