Wall clock time and date at job start Tue Mar 31 2020 06:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47043 * 2 1 4 4 C 1.53009 * 115.56145 * 34.31575 * 3 2 1 5 5 C 1.53073 * 117.51694 * 248.61183 * 3 2 1 6 6 C 1.52996 * 117.50227 * 180.02562 * 3 2 1 7 7 H 1.09001 * 117.50526 * 215.00667 * 6 3 2 8 8 C 1.50705 * 117.49638 * 0.02562 * 6 3 2 9 9 O 1.21277 * 119.99916 * 359.91379 * 8 6 3 10 10 N 1.34775 * 119.99636 * 180.18534 * 8 6 3 11 11 C 1.47161 * 120.71463 * 359.44462 * 10 8 6 12 12 C 1.54287 * 107.82178 * 132.71118 * 11 10 8 13 13 H 1.08997 * 112.53276 * 182.36307 * 12 11 10 14 14 C 1.54545 * 107.97384 * 306.72171 * 12 11 10 15 15 C 1.54282 * 104.84905 * 89.01967 * 14 12 11 16 16 C 1.54550 * 104.84744 * 0.02562 * 15 14 12 17 17 H 1.08998 * 112.18152 * 147.01817 * 16 15 14 18 18 C 1.47168 * 120.70634 * 179.72386 * 10 8 6 19 19 N 1.48308 * 107.10955 * 58.60328 * 12 11 10 20 20 C 1.36935 * 128.07993 * 106.60693 * 19 12 11 21 21 H 1.07993 * 119.99650 * 14.78168 * 20 19 12 22 22 C 1.38813 * 119.99641 * 194.78964 * 20 19 12 23 23 N 1.31616 * 120.00346 * 9.25704 * 22 20 19 24 24 Si 1.86806 * 119.99437 * 189.26657 * 22 20 19 25 25 H 1.48502 * 109.46960 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47416 * 119.99469 * 24 22 20 27 27 H 1.48499 * 109.46784 * 239.99793 * 24 22 20 28 28 H 1.09001 * 109.47226 * 299.99710 * 1 2 3 29 29 H 1.08993 * 109.47912 * 59.99648 * 1 2 3 30 30 H 1.08998 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46782 * 240.00501 * 2 1 3 32 32 H 1.09000 * 109.47732 * 120.00013 * 2 1 3 33 33 H 1.08996 * 109.46862 * 205.69117 * 4 3 2 34 34 H 1.09002 * 109.46758 * 325.68644 * 4 3 2 35 35 H 1.08996 * 109.46938 * 85.68737 * 4 3 2 36 36 H 1.09000 * 117.49705 * 145.03240 * 5 3 2 37 37 H 1.09002 * 117.53194 * 359.97438 * 5 3 2 38 38 H 1.09002 * 109.75047 * 252.41581 * 11 10 8 39 39 H 1.08999 * 109.74594 * 13.14919 * 11 10 8 40 40 H 1.09000 * 110.36233 * 330.17672 * 14 12 11 41 41 H 1.09001 * 110.36385 * 207.86399 * 14 12 11 42 42 H 1.09001 * 110.36296 * 241.15959 * 15 14 12 43 43 H 1.08997 * 110.36314 * 118.84411 * 15 14 12 44 44 H 1.09000 * 109.75031 * 346.85894 * 18 10 8 45 45 H 1.09003 * 109.75078 * 107.53760 * 18 10 8 46 46 H 0.97000 * 119.99408 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1851 2.4450 0.7782 5 6 2.7425 1.9443 -1.2641 6 6 3.5549 1.6563 -0.0006 7 1 3.9430 2.5107 0.5540 8 6 4.4307 0.4298 -0.0018 9 8 3.9283 -0.6740 -0.0006 10 7 5.7721 0.5597 0.0014 11 6 6.3983 1.8914 -0.0062 12 6 7.4975 1.9026 1.0764 13 1 7.9867 2.8726 1.1651 14 6 6.8598 1.4467 2.4083 15 6 7.0083 -0.0890 2.4126 16 6 7.7230 -0.4214 1.0831 17 1 8.3808 -1.2857 1.1745 18 6 6.6421 -0.6273 0.0065 19 7 8.4545 0.8213 0.7377 20 6 9.7190 0.9423 0.2263 21 1 10.2192 1.8992 0.2438 22 6 10.3577 -0.1652 -0.3147 23 7 9.6894 -1.2832 -0.5037 24 14 12.1657 -0.0686 -0.7741 25 1 12.6831 1.2887 -0.4652 26 1 12.9286 -1.0782 0.0029 27 1 12.3226 -0.3391 -2.2258 28 1 -0.3634 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8898 30 1 -0.3633 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.3350 3.4443 0.3697 34 1 0.1338 2.1707 0.6909 35 1 1.4776 2.4339 1.8281 36 1 2.5953 2.9882 -1.5409 37 1 2.8419 1.2468 -2.0958 38 1 6.8386 2.0859 -0.9842 39 1 5.6503 2.6514 0.2194 40 1 5.8067 1.7260 2.4397 41 1 7.3938 1.8818 3.2531 42 1 6.0282 -0.5648 2.4461 43 1 7.6154 -0.4090 3.2594 44 1 6.0534 -1.5144 0.2402 45 1 7.1117 -0.7439 -0.9702 46 1 10.1359 -2.0571 -0.8813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029534562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:39 Heat of formation + Delta-G solvation = 22.616075 kcal Electronic energy + Delta-G solvation = -25202.609316 eV Core-core repulsion = 21900.841246 eV Total energy + Delta-G solvation = -3301.768070 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.30451 -38.74457 -36.71535 -33.74058 -32.40972 -32.02544 -30.57816 -29.28327 -28.29185 -26.37325 -24.40365 -23.80308 -23.68518 -22.68973 -19.81730 -19.63266 -18.88403 -18.07826 -17.17670 -16.10893 -15.49856 -15.17860 -14.70096 -14.59292 -14.05123 -13.99085 -13.76328 -13.43515 -13.15256 -12.99880 -12.73948 -12.64073 -12.11134 -11.88477 -11.79999 -11.71987 -11.61456 -11.57116 -11.08680 -10.99912 -10.88615 -10.82617 -10.78642 -10.31782 -10.00948 -9.96580 -9.84008 -9.74582 -9.53407 -9.49983 -8.99458 -8.74696 -7.98712 -6.83608 -5.84564 -3.20117 2.97829 3.34597 3.41076 3.43231 3.59863 3.94804 4.40471 4.67567 4.75437 4.90719 5.05094 5.13120 5.30549 5.32361 5.39705 5.52560 5.60771 5.62237 5.67623 5.73185 5.74203 5.77001 5.78672 5.86947 5.94038 5.96918 6.05784 6.14276 6.24540 6.26813 6.35730 6.42629 6.43863 6.54164 6.66761 6.69130 6.73058 6.81306 6.89922 7.03593 7.31490 7.51300 7.70557 8.12821 8.17204 8.80657 9.05101 9.67259 10.43927 11.28292 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.029742 B = 0.004242 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.211806 B = 6599.430050 C = 6748.177508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.074 4.074 3 C -0.093 4.093 4 C -0.121 4.121 5 C -0.149 4.149 6 C -0.182 4.182 7 H 0.119 0.881 8 C 0.534 3.466 9 O -0.555 6.555 10 N -0.588 5.588 11 C 0.096 3.904 12 C 0.133 3.867 13 H 0.077 0.923 14 C -0.122 4.122 15 C -0.136 4.136 16 C 0.169 3.831 17 H 0.118 0.882 18 C 0.112 3.888 19 N -0.585 5.585 20 C -0.227 4.227 21 H 0.077 0.923 22 C -0.003 4.003 23 N -0.912 5.912 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.291 1.291 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.980 7.244 2.329 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.111 4.111 3 C -0.094 4.094 4 C -0.178 4.178 5 C -0.186 4.186 6 C -0.203 4.203 7 H 0.137 0.863 8 C 0.322 3.678 9 O -0.435 6.435 10 N -0.319 5.319 11 C -0.029 4.029 12 C 0.024 3.976 13 H 0.095 0.905 14 C -0.161 4.161 15 C -0.176 4.176 16 C 0.061 3.939 17 H 0.135 0.865 18 C -0.011 4.011 19 N -0.306 5.306 20 C -0.355 4.355 21 H 0.095 0.905 22 C -0.200 4.200 23 N -0.559 5.559 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.218 1.218 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.967 6.528 2.202 15.574 hybrid contribution 1.132 0.190 -0.379 1.209 sum -12.835 6.718 1.823 14.601 Atomic orbital electron populations 1.21942 0.96936 1.01102 1.01175 1.21052 0.93538 0.92541 1.03983 1.21559 0.90981 0.97421 0.99408 1.21497 0.99742 0.97023 0.99561 1.23150 1.02198 1.02041 0.91260 1.22408 0.93560 0.99607 1.04758 0.86313 1.19533 0.82256 0.89232 0.76755 1.90629 1.73383 1.27401 1.52085 1.48169 1.04719 1.08451 1.70512 1.22604 0.96040 0.83240 1.01061 1.22042 0.89759 0.93938 0.91851 0.90459 1.22465 0.98789 0.96863 0.98007 1.22637 0.99510 0.95399 1.00011 1.21885 0.90780 0.92802 0.88393 0.86460 1.22432 0.90894 0.85401 1.02342 1.45166 1.12131 0.99983 1.73275 1.19040 0.88340 0.96159 1.31958 0.90535 1.24836 0.98624 0.96723 0.99825 1.69853 1.34646 1.02648 1.48704 0.86066 0.84662 0.77370 0.77716 1.20489 1.21676 1.21794 0.92746 0.93150 0.93070 0.91002 0.90775 0.92605 0.91119 0.92197 0.88319 0.88557 0.91779 0.91553 0.93045 0.92722 0.92868 0.92910 0.91396 0.90487 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.92 37.16 0.33 -1.30 16 2 C -0.07 -1.00 4.36 -26.73 -0.12 -1.12 16 3 C -0.09 -1.15 2.47 -154.47 -0.38 -1.53 16 4 C -0.12 -1.17 9.49 37.16 0.35 -0.82 16 5 C -0.15 -1.82 9.52 -26.72 -0.25 -2.07 16 6 C -0.18 -2.56 4.92 -91.80 -0.45 -3.01 16 7 H 0.12 1.50 6.50 -51.93 -0.34 1.16 16 8 C 0.53 9.74 7.47 -10.98 -0.08 9.66 16 9 O -0.55 -11.48 12.57 5.56 0.07 -11.41 16 10 N -0.59 -11.30 2.24 -171.24 -0.38 -11.68 16 11 C 0.10 1.69 5.84 -3.01 -0.02 1.67 16 12 C 0.13 2.54 4.32 -65.45 -0.28 2.25 16 13 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 14 C -0.12 -2.14 6.19 -25.25 -0.16 -2.30 16 15 C -0.14 -2.68 6.18 -25.25 -0.16 -2.83 16 16 C 0.17 3.86 3.12 -65.64 -0.20 3.66 16 17 H 0.12 3.05 6.36 -51.93 -0.33 2.72 16 18 C 0.11 2.50 5.81 -3.19 -0.02 2.48 16 19 N -0.58 -13.82 2.81 -152.35 -0.43 -14.25 16 20 C -0.23 -5.91 10.37 -15.06 -0.16 -6.07 16 21 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 22 C 0.00 -0.08 5.42 -17.43 -0.09 -0.17 16 23 N -0.91 -25.18 10.43 55.49 0.58 -24.60 16 24 Si 0.91 21.21 29.56 -169.99 -5.03 16.18 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H 0.05 0.51 6.45 -51.93 -0.33 0.18 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.12 7.02 -51.93 -0.36 0.76 16 32 H 0.07 1.16 7.26 -51.93 -0.38 0.79 16 33 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 34 H 0.07 0.61 5.59 -51.93 -0.29 0.32 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 37 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.07 0.94 5.61 -51.93 -0.29 0.65 16 40 H 0.05 0.82 7.85 -51.93 -0.41 0.42 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 1.03 7.84 -51.93 -0.41 0.63 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.53 7.11 -51.93 -0.37 1.17 16 45 H 0.08 1.96 7.85 -51.93 -0.41 1.55 16 46 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -28.54 345.92 -9.33 -37.87 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.67 Total: 4.19 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.69 Total: -1.52 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.23 Total: -50.53 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.07 Total: -11.41 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.54 -9.33 -37.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029534562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.486 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds