Wall clock time and date at job start Tue Mar 31 2020 06:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46930 * 2 1 4 4 C 1.52998 * 115.56175 * 325.69140 * 3 2 1 5 5 C 1.52997 * 117.49862 * 111.38020 * 3 2 1 6 6 C 1.52996 * 60.00033 * 107.48545 * 5 3 2 7 7 H 1.09003 * 117.49635 * 107.51209 * 6 5 3 8 8 C 1.50700 * 117.50389 * 252.50910 * 6 5 3 9 9 O 1.21278 * 119.99968 * 68.60615 * 8 6 5 10 10 N 1.34774 * 120.00093 * 248.60984 * 8 6 5 11 11 C 1.47172 * 120.70740 * 0.02562 * 10 8 6 12 12 C 1.54488 * 108.00435 * 132.63697 * 11 10 8 13 13 H 1.09000 * 112.34782 * 181.98270 * 12 11 10 14 14 C 1.54550 * 107.85294 * 306.76168 * 12 11 10 15 15 C 1.53736 * 104.95341 * 88.86322 * 14 12 11 16 16 C 1.54543 * 104.95444 * 359.97438 * 15 14 12 17 17 H 1.09003 * 112.68816 * 146.56526 * 16 15 14 18 18 C 1.47163 * 120.71096 * 179.97438 * 10 8 6 19 19 N 1.48306 * 106.90083 * 58.48532 * 12 11 10 20 20 C 1.36943 * 128.07355 * 106.80299 * 19 12 11 21 21 H 1.08000 * 119.99849 * 164.63988 * 20 19 12 22 22 C 1.38807 * 119.99961 * 344.63940 * 20 19 12 23 23 N 1.31624 * 120.00275 * 350.72115 * 22 20 19 24 24 Si 1.86798 * 119.99728 * 170.72734 * 22 20 19 25 25 H 1.48505 * 109.47039 * 179.97438 * 24 22 20 26 26 H 1.48493 * 109.47384 * 299.99573 * 24 22 20 27 27 H 1.48502 * 109.47358 * 60.00179 * 24 22 20 28 28 H 1.09001 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47440 * 299.99577 * 1 2 3 30 30 H 1.08993 * 109.47440 * 60.00018 * 1 2 3 31 31 H 1.08998 * 109.46844 * 240.00040 * 2 1 3 32 32 H 1.08997 * 109.47164 * 120.00399 * 2 1 3 33 33 H 1.09005 * 109.47383 * 274.30993 * 4 3 2 34 34 H 1.08997 * 109.47419 * 34.30909 * 4 3 2 35 35 H 1.09001 * 109.47221 * 154.31077 * 4 3 2 36 36 H 1.09004 * 117.49650 * 359.97438 * 5 3 2 37 37 H 1.08994 * 117.49921 * 214.97976 * 5 3 2 38 38 H 1.08995 * 109.74426 * 252.36440 * 11 10 8 39 39 H 1.08994 * 109.75328 * 13.05086 * 11 10 8 40 40 H 1.08995 * 110.36058 * 207.57665 * 14 12 11 41 41 H 1.08994 * 110.36285 * 329.89791 * 14 12 11 42 42 H 1.08997 * 110.41827 * 241.06552 * 15 14 12 43 43 H 1.08997 * 110.20851 * 118.81852 * 15 14 12 44 44 H 1.09005 * 109.74382 * 107.63068 * 18 10 8 45 45 H 1.08994 * 109.74704 * 346.90452 * 18 10 8 46 46 H 0.96998 * 120.00124 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1851 2.4449 -0.7780 5 6 2.7419 1.9437 1.2637 6 6 3.5549 1.6562 0.0000 7 1 3.9430 2.5109 -0.5541 8 6 4.4307 0.4297 -0.0001 9 8 3.9283 -0.6741 0.0002 10 7 5.7721 0.5595 -0.0004 11 6 6.3983 1.8914 -0.0001 12 6 7.5024 1.8997 1.0804 13 1 7.9921 2.8698 1.1651 14 6 6.8672 1.4346 2.4104 15 6 7.0138 -0.0958 2.4062 16 6 7.7243 -0.4247 1.0738 17 1 8.3893 -1.2847 1.1531 18 6 6.6421 -0.6275 0.0000 19 7 8.4561 0.8191 0.7307 20 6 9.7193 0.9415 0.2163 21 1 10.3952 0.0995 0.2383 22 6 10.1310 2.1478 -0.3333 23 7 9.2589 3.1143 -0.5277 24 14 11.9229 2.3995 -0.7972 25 1 12.1018 3.7621 -1.3601 26 1 12.7731 2.2470 0.4106 27 1 12.3182 1.3896 -1.8117 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.4775 2.4340 -1.8280 34 1 0.1338 2.1707 -0.6907 35 1 1.3350 3.4443 -0.3695 36 1 2.8400 1.2458 2.0953 37 1 2.5946 2.9874 1.5409 38 1 6.8360 2.0927 -0.9778 39 1 5.6508 2.6498 0.2320 40 1 7.4044 1.8619 3.2571 41 1 5.8148 1.7157 2.4468 42 1 6.0338 -0.5717 2.4406 43 1 7.6228 -0.4180 3.2508 44 1 7.1102 -0.7413 -0.9778 45 1 6.0539 -1.5150 0.2330 46 1 9.5467 3.9574 -0.9114 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029534564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:52 Heat of formation + Delta-G solvation = 21.209435 kcal Electronic energy + Delta-G solvation = -25271.356951 eV Core-core repulsion = 21969.527884 eV Total energy + Delta-G solvation = -3301.829067 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.30239 -38.72840 -36.72445 -33.68597 -32.52309 -31.98746 -30.56614 -29.27020 -28.25675 -26.37839 -24.45462 -23.70324 -23.63367 -22.72723 -19.80841 -19.66290 -18.79150 -18.15782 -17.09212 -16.08522 -15.31251 -15.27481 -14.81013 -14.57808 -14.14273 -13.94542 -13.68069 -13.40031 -13.12286 -12.97280 -12.80354 -12.59936 -12.07174 -11.81768 -11.78506 -11.72924 -11.60611 -11.54384 -11.07499 -11.04693 -10.89481 -10.80408 -10.77539 -10.36054 -10.07789 -9.92012 -9.83662 -9.67543 -9.54835 -9.49335 -9.06366 -8.72402 -7.99964 -6.84452 -5.87144 -3.21346 2.97961 3.34845 3.40218 3.40523 3.58819 3.99383 4.40454 4.72612 4.80361 4.97735 5.08624 5.18975 5.30651 5.33622 5.42196 5.59664 5.63603 5.69534 5.73119 5.76851 5.78920 5.81201 5.82656 5.95519 5.97674 6.05109 6.11009 6.16317 6.17995 6.28759 6.33413 6.42055 6.44071 6.55643 6.62050 6.67769 6.70815 6.75329 6.90017 7.01368 7.27571 7.47167 7.64925 8.10935 8.17238 8.78866 9.03757 9.65720 10.42984 11.26288 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.027106 B = 0.004442 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.722465 B = 6302.004517 C = 6652.969609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.073 4.073 3 C -0.095 4.095 4 C -0.122 4.122 5 C -0.147 4.147 6 C -0.180 4.180 7 H 0.120 0.880 8 C 0.537 3.463 9 O -0.561 6.561 10 N -0.587 5.587 11 C 0.104 3.896 12 C 0.168 3.832 13 H 0.119 0.881 14 C -0.134 4.134 15 C -0.122 4.122 16 C 0.134 3.866 17 H 0.077 0.923 18 C 0.103 3.897 19 N -0.585 5.585 20 C -0.225 4.225 21 H 0.076 0.924 22 C -0.003 4.003 23 N -0.916 5.916 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.166 -0.844 2.728 13.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.110 4.110 3 C -0.095 4.095 4 C -0.179 4.179 5 C -0.184 4.184 6 C -0.201 4.201 7 H 0.138 0.862 8 C 0.325 3.675 9 O -0.442 6.442 10 N -0.318 5.318 11 C -0.020 4.020 12 C 0.061 3.939 13 H 0.137 0.863 14 C -0.174 4.174 15 C -0.162 4.162 16 C 0.025 3.975 17 H 0.095 0.905 18 C -0.021 4.021 19 N -0.306 5.306 20 C -0.353 4.353 21 H 0.093 0.907 22 C -0.200 4.200 23 N -0.562 5.562 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.211 1.211 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.182 -1.240 2.581 13.490 hybrid contribution 1.139 0.370 -0.394 1.260 sum -12.044 -0.870 2.188 12.272 Atomic orbital electron populations 1.21945 0.96964 1.01026 1.01237 1.21040 0.93511 0.92611 1.03831 1.21551 0.91050 0.97347 0.99563 1.21498 0.99632 0.97134 0.99605 1.23136 1.02018 1.02110 0.91140 1.22367 0.93317 0.99538 1.04860 0.86189 1.19566 0.82254 0.89241 0.76462 1.90607 1.73606 1.27444 1.52552 1.48151 1.04490 1.08745 1.70433 1.22711 0.95405 0.80865 1.02984 1.21998 0.87922 0.95798 0.88216 0.86327 1.22519 0.99224 0.95665 0.99953 1.22358 0.99109 0.96730 0.97955 1.21971 0.91642 0.91880 0.91990 0.90517 1.22310 0.92118 0.87290 1.00418 1.45173 1.13094 0.99306 1.73060 1.18977 0.86809 0.97991 1.31510 0.90656 1.24805 0.98090 0.97321 0.99764 1.69810 1.32240 1.05488 1.48700 0.86199 0.84372 0.76984 0.78180 1.21595 1.21186 1.21125 0.93141 0.93119 0.92725 0.90904 0.91056 0.92218 0.91174 0.92507 0.88593 0.88236 0.90182 0.92062 0.92880 0.93017 0.92762 0.92843 0.92179 0.90813 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.92 37.16 0.33 -1.31 16 2 C -0.07 -0.99 4.36 -26.73 -0.12 -1.10 16 3 C -0.09 -1.21 2.47 -154.51 -0.38 -1.59 16 4 C -0.12 -1.26 9.49 37.16 0.35 -0.91 16 5 C -0.15 -1.86 9.52 -26.73 -0.25 -2.11 16 6 C -0.18 -2.67 4.63 -91.77 -0.42 -3.10 16 7 H 0.12 1.73 6.96 -51.93 -0.36 1.37 16 8 C 0.54 9.78 7.47 -10.99 -0.08 9.70 16 9 O -0.56 -11.21 12.57 5.56 0.07 -11.14 16 10 N -0.59 -11.30 2.26 -171.21 -0.39 -11.69 16 11 C 0.10 2.09 5.64 -2.89 -0.02 2.07 16 12 C 0.17 3.66 3.17 -65.34 -0.21 3.45 16 13 H 0.12 2.92 6.35 -51.93 -0.33 2.59 16 14 C -0.13 -2.52 6.16 -25.53 -0.16 -2.67 16 15 C -0.12 -2.24 6.16 -25.54 -0.16 -2.40 16 16 C 0.13 2.70 4.31 -65.69 -0.28 2.41 16 17 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 18 C 0.10 2.04 5.89 -3.26 -0.02 2.02 16 19 N -0.59 -13.84 2.80 -152.28 -0.43 -14.26 16 20 C -0.22 -5.86 10.37 -15.06 -0.16 -6.01 16 21 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 22 C 0.00 -0.08 5.42 -17.43 -0.09 -0.17 16 23 N -0.92 -24.46 10.42 55.49 0.58 -23.88 16 24 Si 0.91 21.02 29.56 -169.99 -5.03 16.00 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.52 6.45 -51.93 -0.33 0.19 16 31 H 0.07 1.14 7.26 -51.93 -0.38 0.76 16 32 H 0.07 1.09 7.01 -51.93 -0.36 0.73 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.64 5.58 -51.93 -0.29 0.35 16 35 H 0.06 0.53 7.90 -51.93 -0.41 0.12 16 36 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 37 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 38 H 0.08 1.87 7.83 -51.93 -0.41 1.46 16 39 H 0.06 1.08 5.92 -51.93 -0.31 0.78 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.90 7.84 -51.93 -0.41 0.49 16 42 H 0.05 0.97 7.84 -51.93 -0.41 0.56 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.07 1.41 7.11 -51.93 -0.37 1.04 16 46 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 346.22 15.07 5.22 5.22 Total: -1.00 -27.66 346.22 -9.35 -37.00 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.71 Total: 4.47 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.67 Total: -1.72 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.23 Total: -49.83 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.07 Total: -11.14 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.66 -9.35 -37.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029534564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.214 kcal (2) G-P(sol) polarization free energy of solvation -27.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds