Wall clock time and date at job start Tue Mar 31 2020 06:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46930 * 2 1 4 4 C 1.52998 * 115.56175 * 325.69140 * 3 2 1 5 5 C 1.52997 * 117.49862 * 111.38020 * 3 2 1 6 6 C 1.52996 * 60.00033 * 107.48545 * 5 3 2 7 7 H 1.09003 * 117.49635 * 107.51209 * 6 5 3 8 8 C 1.50700 * 117.50389 * 252.50910 * 6 5 3 9 9 O 1.21278 * 119.99968 * 68.60615 * 8 6 5 10 10 N 1.34774 * 120.00093 * 248.60984 * 8 6 5 11 11 C 1.47172 * 120.70740 * 0.02562 * 10 8 6 12 12 C 1.54488 * 108.00435 * 132.63697 * 11 10 8 13 13 H 1.09000 * 112.34782 * 181.98270 * 12 11 10 14 14 C 1.54550 * 107.85294 * 306.76168 * 12 11 10 15 15 C 1.53736 * 104.95341 * 88.86322 * 14 12 11 16 16 C 1.54543 * 104.95444 * 359.97438 * 15 14 12 17 17 H 1.09003 * 112.68816 * 146.56526 * 16 15 14 18 18 C 1.47163 * 120.71096 * 179.97438 * 10 8 6 19 19 N 1.48306 * 106.90083 * 58.48532 * 12 11 10 20 20 C 1.36943 * 128.07355 * 106.80299 * 19 12 11 21 21 H 1.08000 * 119.99849 * 164.63988 * 20 19 12 22 22 C 1.38807 * 119.99961 * 344.63940 * 20 19 12 23 23 N 1.31624 * 120.00275 * 350.72115 * 22 20 19 24 24 Si 1.86798 * 119.99728 * 170.72734 * 22 20 19 25 25 H 1.48505 * 109.47039 * 179.97438 * 24 22 20 26 26 H 1.48493 * 109.47384 * 299.99573 * 24 22 20 27 27 H 1.48502 * 109.47358 * 60.00179 * 24 22 20 28 28 H 1.09001 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47440 * 299.99577 * 1 2 3 30 30 H 1.08993 * 109.47440 * 60.00018 * 1 2 3 31 31 H 1.08998 * 109.46844 * 240.00040 * 2 1 3 32 32 H 1.08997 * 109.47164 * 120.00399 * 2 1 3 33 33 H 1.09005 * 109.47383 * 274.30993 * 4 3 2 34 34 H 1.08997 * 109.47419 * 34.30909 * 4 3 2 35 35 H 1.09001 * 109.47221 * 154.31077 * 4 3 2 36 36 H 1.09004 * 117.49650 * 359.97438 * 5 3 2 37 37 H 1.08994 * 117.49921 * 214.97976 * 5 3 2 38 38 H 1.08995 * 109.74426 * 252.36440 * 11 10 8 39 39 H 1.08994 * 109.75328 * 13.05086 * 11 10 8 40 40 H 1.08995 * 110.36058 * 207.57665 * 14 12 11 41 41 H 1.08994 * 110.36285 * 329.89791 * 14 12 11 42 42 H 1.08997 * 110.41827 * 241.06552 * 15 14 12 43 43 H 1.08997 * 110.20851 * 118.81852 * 15 14 12 44 44 H 1.09005 * 109.74382 * 107.63068 * 18 10 8 45 45 H 1.08994 * 109.74704 * 346.90452 * 18 10 8 46 46 H 0.96998 * 120.00124 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1851 2.4449 -0.7780 5 6 2.7419 1.9437 1.2637 6 6 3.5549 1.6562 0.0000 7 1 3.9430 2.5109 -0.5541 8 6 4.4307 0.4297 -0.0001 9 8 3.9283 -0.6741 0.0002 10 7 5.7721 0.5595 -0.0004 11 6 6.3983 1.8914 -0.0001 12 6 7.5024 1.8997 1.0804 13 1 7.9921 2.8698 1.1651 14 6 6.8672 1.4346 2.4104 15 6 7.0138 -0.0958 2.4062 16 6 7.7243 -0.4247 1.0738 17 1 8.3893 -1.2847 1.1531 18 6 6.6421 -0.6275 0.0000 19 7 8.4561 0.8191 0.7307 20 6 9.7193 0.9415 0.2163 21 1 10.3952 0.0995 0.2383 22 6 10.1310 2.1478 -0.3333 23 7 9.2589 3.1143 -0.5277 24 14 11.9229 2.3995 -0.7972 25 1 12.1018 3.7621 -1.3601 26 1 12.7731 2.2470 0.4106 27 1 12.3182 1.3896 -1.8117 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.4775 2.4340 -1.8280 34 1 0.1338 2.1707 -0.6907 35 1 1.3350 3.4443 -0.3695 36 1 2.8400 1.2458 2.0953 37 1 2.5946 2.9874 1.5409 38 1 6.8360 2.0927 -0.9778 39 1 5.6508 2.6498 0.2320 40 1 7.4044 1.8619 3.2571 41 1 5.8148 1.7157 2.4468 42 1 6.0338 -0.5717 2.4406 43 1 7.6228 -0.4180 3.2508 44 1 7.1102 -0.7413 -0.9778 45 1 6.0539 -1.5150 0.2330 46 1 9.5467 3.9574 -0.9114 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029534564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:51 Heat of formation + Delta-G solvation = 8.414937 kcal Electronic energy + Delta-G solvation = -25271.911762 eV Core-core repulsion = 21969.527884 eV Total energy + Delta-G solvation = -3302.383878 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75306 -40.12977 -38.06793 -35.36287 -34.27629 -33.07097 -32.17065 -31.07042 -29.17282 -27.95777 -26.04420 -25.38577 -24.62850 -24.13311 -21.37284 -21.14856 -20.28882 -19.51324 -18.55245 -17.76759 -16.86916 -16.80137 -16.36781 -15.88379 -15.51293 -15.27885 -14.99497 -14.79194 -14.67094 -14.43633 -14.01073 -13.93486 -13.56509 -13.29671 -13.22626 -13.02483 -12.92754 -12.73708 -12.63400 -12.58525 -12.53454 -12.01869 -12.00852 -11.84315 -11.74591 -11.48003 -11.45831 -11.12770 -10.95947 -10.82932 -10.61106 -10.29078 -9.67246 -8.68953 -7.85425 -5.20076 1.50104 1.50754 1.56927 1.60887 2.13142 2.51455 2.85724 3.33793 3.47798 3.57176 3.72226 3.91693 4.05949 4.09783 4.15510 4.21335 4.22037 4.34562 4.45527 4.51225 4.58206 4.63936 4.72759 4.77178 4.80062 4.84093 4.92260 4.98135 4.99771 5.04186 5.06522 5.10702 5.15203 5.16394 5.29154 5.33463 5.35497 5.38128 5.45871 5.54197 5.62336 5.67904 5.85904 6.24060 6.64443 7.08393 7.30584 7.72237 8.52088 9.26072 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.027106 B = 0.004442 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.722465 B = 6302.004517 C = 6652.969609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.071 4.071 3 C -0.088 4.088 4 C -0.119 4.119 5 C -0.129 4.129 6 C -0.202 4.202 7 H 0.125 0.875 8 C 0.534 3.466 9 O -0.581 6.581 10 N -0.591 5.591 11 C 0.121 3.879 12 C 0.164 3.836 13 H 0.089 0.911 14 C -0.124 4.124 15 C -0.111 4.111 16 C 0.129 3.871 17 H 0.081 0.919 18 C 0.109 3.891 19 N -0.605 5.605 20 C -0.239 4.239 21 H 0.073 0.927 22 C -0.049 4.049 23 N -0.933 5.933 24 Si 0.970 3.030 25 H -0.294 1.294 26 H -0.282 1.282 27 H -0.284 1.284 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.080 0.920 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.937 -0.220 3.730 15.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.089 4.089 4 C -0.176 4.176 5 C -0.167 4.167 6 C -0.223 4.223 7 H 0.143 0.857 8 C 0.325 3.675 9 O -0.462 6.462 10 N -0.322 5.322 11 C -0.003 4.003 12 C 0.057 3.943 13 H 0.106 0.894 14 C -0.163 4.163 15 C -0.150 4.150 16 C 0.022 3.978 17 H 0.099 0.901 18 C -0.016 4.016 19 N -0.327 5.327 20 C -0.368 4.368 21 H 0.091 0.909 22 C -0.243 4.243 23 N -0.580 5.580 24 Si 0.799 3.201 25 H -0.220 1.220 26 H -0.208 1.208 27 H -0.210 1.210 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.146 0.854 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.977 -0.633 3.595 15.415 hybrid contribution 1.656 0.094 -0.728 1.811 sum -13.321 -0.539 2.868 13.637 Atomic orbital electron populations 1.21890 0.94391 1.01701 1.02507 1.20944 0.95739 0.92785 1.01403 1.21710 0.89673 0.97524 0.99982 1.21534 0.99921 0.97104 0.99043 1.23254 0.99755 1.03542 0.90103 1.22359 0.94161 0.98193 1.07573 0.85669 1.20167 0.81872 0.90230 0.75263 1.90604 1.73747 1.28697 1.53201 1.48160 1.05007 1.08019 1.71044 1.22369 0.95563 0.81947 1.00395 1.21945 0.87929 0.94151 0.90298 0.89352 1.22416 0.99972 0.95779 0.98111 1.22253 0.99361 0.96397 0.96967 1.22129 0.91642 0.90981 0.93066 0.90092 1.22133 0.92249 0.88046 0.99140 1.45361 1.13005 1.01111 1.73230 1.19230 0.88090 0.98028 1.31411 0.90906 1.25451 1.01211 0.97337 1.00337 1.69970 1.33272 1.05417 1.49311 0.85296 0.80664 0.76370 0.77738 1.22000 1.20841 1.21025 0.92915 0.91791 0.91383 0.93661 0.93225 0.92509 0.89563 0.90958 0.89210 0.85446 0.94044 0.89466 0.92430 0.91251 0.92009 0.91621 0.94478 0.90142 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.92 71.98 0.64 -2.13 16 2 C -0.07 -1.85 4.36 30.59 0.13 -1.72 16 3 C -0.09 -2.06 2.47 -52.18 -0.13 -2.19 16 4 C -0.12 -2.08 9.49 71.98 0.68 -1.40 16 5 C -0.13 -2.88 9.52 30.59 0.29 -2.59 16 6 C -0.20 -5.66 4.63 -11.54 -0.05 -5.72 16 7 H 0.13 3.38 6.96 -2.39 -0.02 3.36 16 8 C 0.53 19.20 7.47 87.66 0.65 19.85 16 9 O -0.58 -23.15 12.57 -3.02 -0.04 -23.19 16 10 N -0.59 -22.73 2.26 -813.97 -1.84 -24.57 16 11 C 0.12 4.90 5.64 86.76 0.49 5.38 16 12 C 0.16 7.16 3.17 45.68 0.14 7.30 16 13 H 0.09 4.43 6.35 -2.39 -0.02 4.41 16 14 C -0.12 -4.44 6.16 31.37 0.19 -4.25 16 15 C -0.11 -3.88 6.16 31.37 0.19 -3.68 16 16 C 0.13 5.21 4.31 45.43 0.20 5.41 16 17 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 18 C 0.11 4.38 5.89 86.52 0.51 4.89 16 19 N -0.61 -28.97 2.80 -635.68 -1.78 -30.76 16 20 C -0.24 -12.66 10.37 84.03 0.87 -11.79 16 21 H 0.07 3.78 7.85 -2.91 -0.02 3.76 16 22 C -0.05 -2.59 5.42 84.86 0.46 -2.13 16 23 N -0.93 -50.95 10.42 21.65 0.23 -50.72 16 24 Si 0.97 43.81 29.56 68.60 2.03 45.84 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.10 6.45 -2.39 -0.02 1.08 16 31 H 0.04 1.41 7.26 -2.39 -0.02 1.39 16 32 H 0.05 1.48 7.01 -2.39 -0.02 1.47 16 33 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.09 1.24 5.58 -2.39 -0.01 1.22 16 35 H 0.07 1.06 7.90 -2.39 -0.02 1.04 16 36 H 0.09 2.15 8.05 -2.39 -0.02 2.13 16 37 H 0.13 2.16 8.05 -2.39 -0.02 2.14 16 38 H 0.04 1.99 7.83 -2.39 -0.02 1.97 16 39 H 0.09 3.01 5.92 -2.39 -0.01 3.00 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.07 2.24 7.84 -2.39 -0.02 2.22 16 42 H 0.06 2.08 7.84 -2.39 -0.02 2.06 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.08 3.09 7.11 -2.39 -0.02 3.08 16 46 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -60.55 346.22 4.83 -55.72 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.95 Total: 22.44 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 5.28 Total: 5.25 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -3.39 Total: -106.05 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.04 Total: -23.19 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -60.55 4.83 -55.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029534564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.134 kcal (2) G-P(sol) polarization free energy of solvation -60.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds