Wall clock time and date at job start Tue Mar 31 2020 08:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47139 * 2 1 4 4 C 1.53005 * 109.46493 * 119.99596 * 2 1 3 5 5 H 1.08998 * 115.55004 * 30.38948 * 4 2 1 6 6 C 1.53077 * 117.51311 * 244.66023 * 4 2 1 7 7 C 1.52997 * 59.98730 * 252.52785 * 6 4 2 8 8 H 1.09000 * 117.49847 * 252.50094 * 7 6 4 9 9 C 1.50700 * 117.50075 * 107.49737 * 7 6 4 10 10 O 1.21280 * 120.00447 * 271.14856 * 9 7 6 11 11 N 1.34776 * 119.99612 * 91.14309 * 9 7 6 12 12 C 1.47266 * 120.77725 * 0.04786 * 11 9 7 13 13 C 1.53887 * 108.05692 * 132.73102 * 12 11 9 14 14 H 1.08999 * 112.58474 * 182.22714 * 13 12 11 15 15 C 1.54544 * 107.83176 * 306.50990 * 13 12 11 16 16 C 1.54284 * 104.84890 * 89.06708 * 15 13 12 17 17 C 1.54548 * 104.84932 * 0.02562 * 16 15 13 18 18 H 1.08999 * 112.18194 * 147.01625 * 17 16 15 19 19 C 1.47165 * 120.71264 * 180.02562 * 11 9 7 20 20 N 1.48313 * 107.20916 * 58.36885 * 13 12 11 21 21 C 1.36935 * 128.08205 * 106.72065 * 20 13 12 22 22 H 1.07999 * 119.99510 * 14.36759 * 21 20 13 23 23 C 1.38810 * 120.00358 * 194.36550 * 21 20 13 24 24 N 1.31618 * 119.99707 * 9.83464 * 23 21 20 25 25 Si 1.86806 * 120.00059 * 189.83644 * 23 21 20 26 26 H 1.48502 * 109.46790 * 94.98259 * 25 23 21 27 27 H 1.48492 * 109.46790 * 214.98466 * 25 23 21 28 28 H 1.48499 * 109.46812 * 334.98419 * 25 23 21 29 29 H 1.08998 * 109.46745 * 64.63892 * 1 2 3 30 30 H 1.08991 * 109.47098 * 184.63752 * 1 2 3 31 31 H 1.08999 * 109.47060 * 304.64562 * 1 2 3 32 32 H 1.08991 * 109.47225 * 239.99677 * 2 1 3 33 33 H 1.09006 * 109.47153 * 178.81454 * 3 2 1 34 34 H 1.08998 * 109.47016 * 298.81484 * 3 2 1 35 35 H 1.08997 * 109.47588 * 58.81659 * 3 2 1 36 36 H 1.09001 * 117.49449 * 145.04051 * 6 4 2 37 37 H 1.09006 * 117.51058 * 0.02562 * 6 4 2 38 38 H 1.08998 * 109.73090 * 13.09792 * 12 11 9 39 39 H 1.08999 * 109.74722 * 252.37753 * 12 11 9 40 40 H 1.08997 * 110.36683 * 330.22639 * 15 13 12 41 41 H 1.09003 * 110.36615 * 207.90888 * 15 13 12 42 42 H 1.08997 * 110.36263 * 241.16645 * 16 15 13 43 43 H 1.08998 * 110.36699 * 118.84258 * 16 15 13 44 44 H 1.09007 * 109.74918 * 107.61060 * 19 11 9 45 45 H 1.08998 * 109.74739 * 346.93457 * 19 11 9 46 46 H 0.97003 * 119.99507 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.3968 -1.5150 1.6294 6 6 2.8234 0.1049 2.2725 7 6 3.5520 -0.9094 1.3888 8 1 3.9035 -1.8270 1.8605 9 6 4.4249 -0.3703 0.2850 10 8 3.9517 -0.1505 -0.8099 11 7 5.7315 -0.1324 0.5145 12 6 6.3240 -0.3940 1.8371 13 6 7.6345 -1.1729 1.6270 14 1 8.1176 -1.4405 2.5667 15 6 7.3144 -2.4129 0.7618 16 6 7.4815 -1.9325 -0.6948 17 6 7.8880 -0.4460 -0.5774 18 1 8.5617 -0.1392 -1.3775 19 6 6.5982 0.3945 -0.5518 20 7 8.5075 -0.3389 0.7657 21 6 9.6252 0.3653 1.1261 22 1 10.0995 0.1753 2.0776 23 6 10.1485 1.3233 0.2687 24 7 9.4703 1.6938 -0.7967 25 14 11.8154 2.0867 0.6269 26 1 12.8670 1.3530 -0.1221 27 1 11.8088 3.5103 0.2047 28 1 12.0953 2.0035 2.0829 29 1 -0.3633 0.4402 -0.9286 30 1 -0.3633 -1.0242 0.0831 31 1 -0.3633 0.5842 0.8454 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0213 34 1 1.6942 1.9501 -0.9004 35 1 1.6596 1.9625 0.8791 36 1 2.6953 -0.1454 3.3257 37 1 2.9752 1.1624 2.0558 38 1 5.6351 -0.9875 2.4381 39 1 6.5333 0.5501 2.3401 40 1 6.2907 -2.7437 0.9370 41 1 8.0165 -3.2181 0.9785 42 1 6.5400 -2.0269 -1.2356 43 1 8.2657 -2.5014 -1.1942 44 1 6.8416 1.4372 -0.3470 45 1 6.0888 0.3172 -1.5123 46 1 9.8362 2.3629 -1.3961 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029534767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:07 Heat of formation + Delta-G solvation = 26.333052 kcal Electronic energy + Delta-G solvation = -25423.794569 eV Core-core repulsion = 22122.187678 eV Total energy + Delta-G solvation = -3301.606890 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41334 -38.75188 -36.55619 -33.84098 -32.86425 -32.28975 -30.57911 -29.28069 -27.03718 -26.46028 -24.45825 -23.79192 -23.40687 -22.68690 -19.76841 -19.58789 -19.03444 -18.28046 -17.20756 -16.16032 -15.70846 -15.15442 -14.85971 -14.62392 -14.47822 -13.87074 -13.78312 -13.31612 -13.01896 -12.78452 -12.62665 -12.45572 -12.25868 -11.83321 -11.75846 -11.62511 -11.48252 -11.13393 -11.05746 -10.86985 -10.81894 -10.73966 -10.56355 -10.32453 -10.16522 -10.01921 -9.86401 -9.82407 -9.57572 -9.53003 -8.98940 -8.73728 -7.97532 -6.84553 -5.84719 -3.19986 3.05094 3.34912 3.40708 3.42752 3.58886 3.93781 4.40502 4.66782 4.88422 4.94675 5.11307 5.18284 5.30160 5.32322 5.39871 5.50879 5.62361 5.69334 5.71414 5.74757 5.76490 5.86660 5.87103 5.96649 5.98693 6.05399 6.09214 6.20156 6.24151 6.35062 6.37850 6.42506 6.53726 6.61631 6.67357 6.70603 6.73809 6.80815 6.89535 7.03793 7.31018 7.50675 7.70142 8.12502 8.16375 8.79565 9.04879 9.67109 10.43594 11.28094 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.026127 B = 0.004535 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.437959 B = 6172.731288 C = 6440.206353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.116 4.116 5 H 0.105 0.895 6 C -0.162 4.162 7 C -0.182 4.182 8 H 0.120 0.880 9 C 0.535 3.465 10 O -0.547 6.547 11 N -0.587 5.587 12 C 0.099 3.901 13 C 0.133 3.867 14 H 0.078 0.922 15 C -0.122 4.122 16 C -0.136 4.136 17 C 0.169 3.831 18 H 0.118 0.882 19 C 0.112 3.888 20 N -0.584 5.584 21 C -0.227 4.227 22 H 0.077 0.923 23 C -0.003 4.003 24 N -0.913 5.913 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.646 -5.466 4.998 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C -0.203 4.203 4 C -0.134 4.134 5 H 0.123 0.877 6 C -0.199 4.199 7 C -0.203 4.203 8 H 0.138 0.862 9 C 0.323 3.677 10 O -0.427 6.427 11 N -0.318 5.318 12 C -0.027 4.027 13 C 0.024 3.976 14 H 0.096 0.904 15 C -0.162 4.162 16 C -0.176 4.176 17 C 0.061 3.939 18 H 0.135 0.865 19 C -0.011 4.011 20 N -0.305 5.305 21 C -0.355 4.355 22 H 0.094 0.906 23 C -0.200 4.200 24 N -0.559 5.559 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.660 -5.120 4.353 14.334 hybrid contribution 0.918 0.391 0.377 1.067 sum -11.742 -4.729 4.730 13.514 Atomic orbital electron populations 1.21863 0.96032 1.01029 1.01233 1.20662 0.93822 0.96378 0.97261 1.22065 1.02812 0.95346 1.00041 1.22456 0.91506 1.01319 0.98127 0.87656 1.23192 1.02785 0.97805 0.96167 1.22214 0.94784 1.02163 1.01189 0.86245 1.19498 0.81946 0.78168 0.88124 1.90614 1.72977 1.53839 1.25306 1.48223 1.07884 1.62479 1.13257 1.22481 0.96150 1.00367 0.83667 1.21967 0.89847 0.90871 0.94927 0.90444 1.22475 0.99244 0.97788 0.96656 1.22638 0.99635 0.99557 0.95742 1.21894 0.91847 0.89308 0.90838 0.86463 1.22437 0.90732 0.99288 0.88663 1.45161 1.27586 1.54707 1.03089 1.19012 1.00181 1.13007 1.03334 0.90556 1.24821 0.99162 0.97689 0.98306 1.69849 1.36968 1.33600 1.15436 0.86115 0.83724 0.78336 0.77630 1.21624 1.21759 1.20624 0.92970 0.93144 0.93197 0.88726 0.91128 0.93442 0.94011 0.88488 0.87846 0.91568 0.91840 0.93079 0.92742 0.92856 0.92919 0.90485 0.91384 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.16 37.16 0.34 -1.21 16 2 C -0.06 -0.84 2.43 -90.61 -0.22 -1.06 16 3 C -0.15 -2.10 7.16 37.16 0.27 -1.83 16 4 C -0.12 -1.41 5.73 -90.57 -0.52 -1.93 16 5 H 0.11 1.09 8.08 -51.93 -0.42 0.67 16 6 C -0.16 -1.92 9.32 -26.69 -0.25 -2.17 16 7 C -0.18 -2.49 4.58 -91.77 -0.42 -2.91 16 8 H 0.12 1.45 7.49 -51.93 -0.39 1.06 16 9 C 0.53 9.40 6.07 -10.99 -0.07 9.34 16 10 O -0.55 -10.89 11.42 5.56 0.06 -10.83 16 11 N -0.59 -10.99 2.26 -171.39 -0.39 -11.38 16 12 C 0.10 1.70 5.80 -3.16 -0.02 1.69 16 13 C 0.13 2.51 4.32 -65.66 -0.28 2.22 16 14 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 15 C -0.12 -2.13 6.18 -25.25 -0.16 -2.28 16 16 C -0.14 -2.65 6.18 -25.25 -0.16 -2.81 16 17 C 0.17 3.82 3.12 -65.62 -0.20 3.61 16 18 H 0.12 3.03 6.35 -51.93 -0.33 2.70 16 19 C 0.11 2.44 5.82 -3.17 -0.02 2.42 16 20 N -0.58 -13.71 2.81 -152.56 -0.43 -14.13 16 21 C -0.23 -5.89 10.37 -15.06 -0.16 -6.05 16 22 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 23 C 0.00 -0.07 5.42 -17.43 -0.09 -0.16 16 24 N -0.91 -25.04 10.45 55.49 0.58 -24.46 16 25 Si 0.91 21.14 29.57 -169.99 -5.03 16.12 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.50 6.56 -51.93 -0.34 1.16 16 33 H 0.07 1.21 4.48 -51.93 -0.23 0.98 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.53 7.26 -51.93 -0.38 0.16 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.10 1.35 5.83 -51.93 -0.30 1.05 16 38 H 0.07 0.93 6.08 -51.93 -0.32 0.61 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.80 7.84 -51.93 -0.41 0.40 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 1.02 7.84 -51.93 -0.41 0.62 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.08 1.93 7.87 -51.93 -0.41 1.52 16 45 H 0.07 1.51 7.11 -51.93 -0.37 1.14 16 46 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -27.91 341.72 -9.66 -37.56 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.65 Total: 5.10 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.96 Total: -3.13 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.24 Total: -49.97 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.06 Total: -10.83 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.91 -9.66 -37.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029534767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.896 kcal (2) G-P(sol) polarization free energy of solvation -27.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds