Wall clock time and date at job start Tue Mar 31 2020 08:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47139 * 2 1 4 4 C 1.53005 * 109.46493 * 119.99596 * 2 1 3 5 5 H 1.08998 * 115.55004 * 30.38948 * 4 2 1 6 6 C 1.53077 * 117.51311 * 244.66023 * 4 2 1 7 7 C 1.52997 * 59.98730 * 252.52785 * 6 4 2 8 8 H 1.09000 * 117.49847 * 252.50094 * 7 6 4 9 9 C 1.50700 * 117.50075 * 107.49737 * 7 6 4 10 10 O 1.21280 * 120.00447 * 271.14856 * 9 7 6 11 11 N 1.34776 * 119.99612 * 91.14309 * 9 7 6 12 12 C 1.47266 * 120.77725 * 0.04786 * 11 9 7 13 13 C 1.53887 * 108.05692 * 132.73102 * 12 11 9 14 14 H 1.08999 * 112.58474 * 182.22714 * 13 12 11 15 15 C 1.54544 * 107.83176 * 306.50990 * 13 12 11 16 16 C 1.54284 * 104.84890 * 89.06708 * 15 13 12 17 17 C 1.54548 * 104.84932 * 0.02562 * 16 15 13 18 18 H 1.08999 * 112.18194 * 147.01625 * 17 16 15 19 19 C 1.47165 * 120.71264 * 180.02562 * 11 9 7 20 20 N 1.48313 * 107.20916 * 58.36885 * 13 12 11 21 21 C 1.36935 * 128.08205 * 106.72065 * 20 13 12 22 22 H 1.07999 * 119.99510 * 14.36759 * 21 20 13 23 23 C 1.38810 * 120.00358 * 194.36550 * 21 20 13 24 24 N 1.31618 * 119.99707 * 9.83464 * 23 21 20 25 25 Si 1.86806 * 120.00059 * 189.83644 * 23 21 20 26 26 H 1.48502 * 109.46790 * 94.98259 * 25 23 21 27 27 H 1.48492 * 109.46790 * 214.98466 * 25 23 21 28 28 H 1.48499 * 109.46812 * 334.98419 * 25 23 21 29 29 H 1.08998 * 109.46745 * 64.63892 * 1 2 3 30 30 H 1.08991 * 109.47098 * 184.63752 * 1 2 3 31 31 H 1.08999 * 109.47060 * 304.64562 * 1 2 3 32 32 H 1.08991 * 109.47225 * 239.99677 * 2 1 3 33 33 H 1.09006 * 109.47153 * 178.81454 * 3 2 1 34 34 H 1.08998 * 109.47016 * 298.81484 * 3 2 1 35 35 H 1.08997 * 109.47588 * 58.81659 * 3 2 1 36 36 H 1.09001 * 117.49449 * 145.04051 * 6 4 2 37 37 H 1.09006 * 117.51058 * 0.02562 * 6 4 2 38 38 H 1.08998 * 109.73090 * 13.09792 * 12 11 9 39 39 H 1.08999 * 109.74722 * 252.37753 * 12 11 9 40 40 H 1.08997 * 110.36683 * 330.22639 * 15 13 12 41 41 H 1.09003 * 110.36615 * 207.90888 * 15 13 12 42 42 H 1.08997 * 110.36263 * 241.16645 * 16 15 13 43 43 H 1.08998 * 110.36699 * 118.84258 * 16 15 13 44 44 H 1.09007 * 109.74918 * 107.61060 * 19 11 9 45 45 H 1.08998 * 109.74739 * 346.93457 * 19 11 9 46 46 H 0.97003 * 119.99507 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.3968 -1.5150 1.6294 6 6 2.8234 0.1049 2.2725 7 6 3.5520 -0.9094 1.3888 8 1 3.9035 -1.8270 1.8605 9 6 4.4249 -0.3703 0.2850 10 8 3.9517 -0.1505 -0.8099 11 7 5.7315 -0.1324 0.5145 12 6 6.3240 -0.3940 1.8371 13 6 7.6345 -1.1729 1.6270 14 1 8.1176 -1.4405 2.5667 15 6 7.3144 -2.4129 0.7618 16 6 7.4815 -1.9325 -0.6948 17 6 7.8880 -0.4460 -0.5774 18 1 8.5617 -0.1392 -1.3775 19 6 6.5982 0.3945 -0.5518 20 7 8.5075 -0.3389 0.7657 21 6 9.6252 0.3653 1.1261 22 1 10.0995 0.1753 2.0776 23 6 10.1485 1.3233 0.2687 24 7 9.4703 1.6938 -0.7967 25 14 11.8154 2.0867 0.6269 26 1 12.8670 1.3530 -0.1221 27 1 11.8088 3.5103 0.2047 28 1 12.0953 2.0035 2.0829 29 1 -0.3633 0.4402 -0.9286 30 1 -0.3633 -1.0242 0.0831 31 1 -0.3633 0.5842 0.8454 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0213 34 1 1.6942 1.9501 -0.9004 35 1 1.6596 1.9625 0.8791 36 1 2.6953 -0.1454 3.3257 37 1 2.9752 1.1624 2.0558 38 1 5.6351 -0.9875 2.4381 39 1 6.5333 0.5501 2.3401 40 1 6.2907 -2.7437 0.9370 41 1 8.0165 -3.2181 0.9785 42 1 6.5400 -2.0269 -1.2356 43 1 8.2657 -2.5014 -1.1942 44 1 6.8416 1.4372 -0.3470 45 1 6.0888 0.3172 -1.5123 46 1 9.8362 2.3629 -1.3961 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029534767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:59 Heat of formation + Delta-G solvation = 12.525063 kcal Electronic energy + Delta-G solvation = -25424.393328 eV Core-core repulsion = 22122.187678 eV Total energy + Delta-G solvation = -3302.205650 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79664 -40.15774 -37.85063 -35.43486 -34.26996 -33.76383 -32.20324 -31.06859 -28.11099 -28.00616 -26.04066 -25.44179 -24.33615 -24.12276 -21.25177 -21.14275 -20.33113 -19.71659 -18.62736 -17.74495 -17.16747 -16.63219 -16.45061 -15.91997 -15.69742 -15.57753 -15.11811 -14.69321 -14.62625 -14.38098 -13.83639 -13.68056 -13.50573 -13.30648 -13.21206 -13.13237 -12.86992 -12.71421 -12.58257 -12.52184 -12.14516 -11.97658 -11.84332 -11.74406 -11.64113 -11.49441 -11.44932 -11.17141 -11.11295 -10.79568 -10.74342 -10.24654 -9.61645 -8.69133 -7.84730 -5.20089 1.48301 1.49440 1.57679 1.73398 2.17589 2.51324 2.88919 3.34883 3.50186 3.59744 3.82707 3.96937 4.08792 4.10851 4.16603 4.25666 4.31480 4.34825 4.39101 4.45108 4.53302 4.67090 4.74117 4.80573 4.83663 4.88873 4.91553 4.98131 5.00887 5.06629 5.09759 5.12830 5.13842 5.18737 5.26632 5.32537 5.39386 5.41771 5.50970 5.54407 5.59421 5.67880 5.88040 6.22915 6.72889 7.06209 7.38441 7.73815 8.52535 9.26880 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.026127 B = 0.004535 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.437959 B = 6172.731288 C = 6440.206353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.110 4.110 5 H 0.137 0.863 6 C -0.148 4.148 7 C -0.194 4.194 8 H 0.148 0.852 9 C 0.531 3.469 10 O -0.576 6.576 11 N -0.592 5.592 12 C 0.106 3.894 13 C 0.126 3.874 14 H 0.095 0.905 15 C -0.110 4.110 16 C -0.128 4.128 17 C 0.166 3.834 18 H 0.075 0.925 19 C 0.131 3.869 20 N -0.605 5.605 21 C -0.230 4.230 22 H 0.083 0.917 23 C -0.058 4.058 24 N -0.940 5.940 25 Si 0.971 3.029 26 H -0.292 1.292 27 H -0.301 1.301 28 H -0.267 1.267 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.058 0.942 36 H 0.132 0.868 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.033 0.967 45 H 0.053 0.947 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.483 -7.642 7.979 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 C -0.198 4.198 4 C -0.128 4.128 5 H 0.155 0.845 6 C -0.185 4.185 7 C -0.214 4.214 8 H 0.166 0.834 9 C 0.321 3.679 10 O -0.458 6.458 11 N -0.323 5.323 12 C -0.019 4.019 13 C 0.019 3.981 14 H 0.113 0.887 15 C -0.149 4.149 16 C -0.167 4.167 17 C 0.058 3.942 18 H 0.093 0.907 19 C 0.006 3.994 20 N -0.327 5.327 21 C -0.359 4.359 22 H 0.101 0.899 23 C -0.252 4.252 24 N -0.588 5.588 25 Si 0.800 3.200 26 H -0.219 1.219 27 H -0.229 1.229 28 H -0.192 1.192 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.150 0.850 37 H 0.104 0.896 38 H 0.131 0.869 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.523 -7.329 7.375 17.861 hybrid contribution 1.433 1.099 -0.595 1.901 sum -13.090 -6.230 6.780 16.004 Atomic orbital electron populations 1.21796 0.93715 1.02304 1.01665 1.20606 0.95745 0.95048 0.96960 1.22004 1.00584 0.96837 1.00399 1.22595 0.90774 1.01940 0.97486 0.84537 1.23282 1.01008 0.96481 0.97720 1.22239 0.94912 1.03678 1.00615 0.83405 1.20299 0.81493 0.77144 0.88944 1.90615 1.73302 1.54719 1.27138 1.48220 1.08267 1.62869 1.12965 1.22471 0.96384 0.99938 0.83061 1.22271 0.89775 0.90807 0.95256 0.88699 1.22410 1.01261 0.97192 0.94003 1.22504 0.99424 0.96979 0.97799 1.21696 0.91164 0.91487 0.89820 0.90667 1.21853 0.91257 0.96978 0.89271 1.45355 1.27978 1.55055 1.04325 1.19354 1.00900 1.12445 1.03173 0.89893 1.25537 1.02122 0.98900 0.98640 1.70059 1.38138 1.34213 1.16400 0.85173 0.80170 0.76693 0.77931 1.21947 1.22857 1.19161 0.93299 0.91543 0.91951 0.91850 0.94411 0.94338 0.92312 0.85025 0.89636 0.86921 0.93742 0.90423 0.91270 0.92860 0.92957 0.94861 0.92899 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.16 71.98 0.66 -1.93 16 2 C -0.07 -1.64 2.43 -10.79 -0.03 -1.66 16 3 C -0.14 -4.05 7.16 71.98 0.52 -3.53 16 4 C -0.11 -2.26 5.73 -10.76 -0.06 -2.32 16 5 H 0.14 2.03 8.08 -2.39 -0.02 2.02 16 6 C -0.15 -2.91 9.32 30.62 0.29 -2.62 16 7 C -0.19 -4.58 4.58 -11.54 -0.05 -4.63 16 8 H 0.15 2.71 7.49 -2.39 -0.02 2.69 16 9 C 0.53 18.22 6.07 87.66 0.53 18.75 16 10 O -0.58 -23.44 11.42 -3.03 -0.03 -23.48 16 11 N -0.59 -22.03 2.26 -814.55 -1.84 -23.87 16 12 C 0.11 3.42 5.80 86.53 0.50 3.93 16 13 C 0.13 4.49 4.32 45.47 0.20 4.69 16 14 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 15 C -0.11 -3.48 6.18 31.56 0.20 -3.28 16 16 C -0.13 -4.91 6.18 31.56 0.20 -4.72 16 17 C 0.17 7.81 3.12 45.50 0.14 7.95 16 18 H 0.08 4.16 6.35 -2.39 -0.02 4.15 16 19 C 0.13 6.06 5.82 86.58 0.50 6.56 16 20 N -0.61 -28.61 2.81 -636.57 -1.79 -30.39 16 21 C -0.23 -12.04 10.37 84.03 0.87 -11.17 16 22 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 23 C -0.06 -3.16 5.42 84.86 0.46 -2.70 16 24 N -0.94 -54.52 10.45 21.65 0.23 -54.30 16 25 Si 0.97 44.55 29.57 68.60 2.03 46.58 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 2.01 6.56 -2.39 -0.02 1.99 16 33 H 0.04 1.33 4.48 -2.38 -0.01 1.31 16 34 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.44 7.26 -2.39 -0.02 1.42 16 36 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.09 2.03 5.83 -2.38 -0.01 2.02 16 38 H 0.11 2.62 6.08 -2.39 -0.01 2.61 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 2.08 7.84 -2.39 -0.02 2.06 16 41 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 2.03 7.84 -2.39 -0.02 2.01 16 43 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.03 1.80 7.87 -2.38 -0.02 1.78 16 45 H 0.05 2.53 7.11 -2.39 -0.02 2.52 16 46 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -65.22 341.72 4.47 -60.76 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.95 Total: 21.38 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 4.92 Total: 3.32 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -3.40 Total: -108.56 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.03 Total: -23.48 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.22 4.47 -60.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029534767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.281 kcal (2) G-P(sol) polarization free energy of solvation -65.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds