Wall clock time and date at job start Tue Mar 31 2020 08:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47232 * 2 1 4 4 C 1.53000 * 109.46982 * 120.00299 * 2 1 3 5 5 H 1.09007 * 115.55711 * 274.30369 * 4 2 1 6 6 C 1.53001 * 117.50009 * 128.62256 * 4 2 1 7 7 C 1.52999 * 117.50333 * 59.99714 * 4 2 1 8 8 H 1.08997 * 117.51633 * 0.02562 * 7 4 2 9 9 C 1.50697 * 117.49913 * 214.98043 * 7 4 2 10 10 O 1.21281 * 120.00214 * 359.97438 * 9 7 4 11 11 N 1.34777 * 119.99825 * 179.97438 * 9 7 4 12 12 C 1.47167 * 120.70616 * 180.02562 * 11 9 7 13 13 C 1.53893 * 108.03290 * 132.73692 * 12 11 9 14 14 H 1.08997 * 112.09750 * 181.90505 * 13 12 11 15 15 C 1.54549 * 107.82719 * 306.49713 * 13 12 11 16 16 C 1.54833 * 104.74067 * 88.94352 * 15 13 12 17 17 C 1.54542 * 104.74726 * 0.02562 * 16 15 13 18 18 H 1.09002 * 112.68423 * 146.80719 * 17 16 15 19 19 C 1.47159 * 120.71276 * 359.97421 * 11 9 7 20 20 N 1.48302 * 107.20468 * 58.35347 * 13 12 11 21 21 C 1.36935 * 128.07840 * 106.71316 * 20 13 12 22 22 H 1.07997 * 120.00382 * 206.63619 * 21 20 13 23 23 C 1.38813 * 120.00008 * 26.63190 * 21 20 13 24 24 N 1.31617 * 120.00262 * 195.70515 * 23 21 20 25 25 Si 1.86806 * 119.99979 * 15.70375 * 23 21 20 26 26 H 1.48507 * 109.46964 * 269.11182 * 25 23 21 27 27 H 1.48498 * 109.47005 * 29.10694 * 25 23 21 28 28 H 1.48497 * 109.47513 * 149.11122 * 25 23 21 29 29 H 1.09003 * 109.46994 * 299.99920 * 1 2 3 30 30 H 1.09002 * 109.46834 * 59.99843 * 1 2 3 31 31 H 1.08996 * 109.47173 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46974 * 239.99526 * 2 1 3 33 33 H 1.08999 * 109.47751 * 60.00352 * 3 2 1 34 34 H 1.09004 * 109.47455 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47339 * 299.99848 * 3 2 1 36 36 H 1.08998 * 117.49808 * 145.01933 * 6 4 2 37 37 H 1.08994 * 117.50018 * 359.97438 * 6 4 2 38 38 H 1.08997 * 109.75173 * 13.10216 * 12 11 9 39 39 H 1.09002 * 109.78828 * 252.38597 * 12 11 9 40 40 H 1.08991 * 110.36600 * 207.90895 * 15 13 12 41 41 H 1.09002 * 110.36435 * 330.22605 * 15 13 12 42 42 H 1.09005 * 110.30641 * 241.24783 * 16 15 13 43 43 H 1.09001 * 110.51790 * 118.86666 * 16 15 13 44 44 H 1.08999 * 109.74755 * 346.89999 * 19 11 9 45 45 H 1.09003 * 109.74813 * 107.58175 * 19 11 9 46 46 H 0.97004 * 119.99992 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1271 -0.1061 2.1448 6 6 3.0741 -1.8314 1.0513 7 6 1.6357 -2.1853 1.4343 8 1 1.0067 -2.6350 0.6661 9 6 1.3884 -2.6663 2.8408 10 8 1.5125 -1.9016 3.7740 11 7 1.0293 -3.9465 3.0618 12 6 0.7833 -4.4327 4.4289 13 6 -0.5406 -5.2171 4.4246 14 1 -0.8048 -5.5811 5.4174 15 6 -1.6291 -4.3048 3.8152 16 6 -1.5692 -4.5826 2.2932 17 6 -0.4508 -5.6365 2.1294 18 1 -0.6441 -6.3309 1.3117 19 6 0.8736 -4.8876 1.9413 20 7 -0.3939 -6.3200 3.4441 21 6 -0.2370 -7.6571 3.6942 22 1 0.2712 -8.2847 2.9772 23 6 -0.7312 -8.2060 4.8696 24 7 -0.3260 -9.3952 5.2619 25 14 -1.9712 -7.2567 5.8947 26 1 -1.2541 -6.4286 6.8973 27 1 -2.7748 -6.3762 5.0091 28 1 -2.8704 -8.2105 6.5924 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.8415 -1.9466 1.8168 37 1 3.3909 -2.0482 0.0312 38 1 0.7083 -3.5872 5.1127 39 1 1.5979 -5.0868 4.7400 40 1 -2.6096 -4.5663 4.2129 41 1 -1.4036 -3.2578 4.0178 42 1 -1.3144 -3.6713 1.7520 43 1 -2.5202 -4.9812 1.9398 44 1 0.8576 -4.3392 0.9994 45 1 1.7001 -5.5982 1.9396 46 1 -0.6716 -9.7789 6.0831 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029534768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:20 Heat of formation + Delta-G solvation = 22.686178 kcal Electronic energy + Delta-G solvation = -25031.534417 eV Core-core repulsion = 21729.769387 eV Total energy + Delta-G solvation = -3301.765031 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50522 -38.87490 -37.13774 -33.98025 -33.41143 -32.39617 -31.10426 -29.94929 -27.37623 -26.81644 -24.76350 -23.92837 -23.14591 -22.80642 -20.32087 -20.02895 -19.73481 -18.43726 -17.42370 -16.41127 -16.06375 -15.67687 -15.04237 -14.88398 -14.54261 -13.87163 -13.73653 -13.45835 -13.38700 -13.28297 -13.06161 -12.74680 -12.55345 -12.36599 -12.19777 -12.14172 -11.87081 -11.47035 -11.33396 -11.29659 -11.05088 -10.91172 -10.81569 -10.57114 -10.32555 -10.21658 -10.08561 -9.89665 -9.86670 -9.54927 -9.40628 -8.77916 -8.28758 -7.08132 -6.02227 -3.40685 2.73929 3.24179 3.28169 3.41868 3.45268 3.81337 4.41087 4.45100 4.64141 4.66151 4.72336 4.88196 5.03446 5.10753 5.17197 5.20523 5.37734 5.39011 5.43457 5.47785 5.50358 5.58667 5.60230 5.61062 5.68385 5.71197 5.83061 5.86746 5.91114 6.00536 6.03082 6.12392 6.14536 6.18600 6.28858 6.31181 6.34204 6.39127 6.42652 6.62835 6.74555 6.96702 7.59350 7.83053 8.25269 8.50612 8.69792 9.57521 10.14986 11.13778 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.004292 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.698491 B = 6522.554028 C = 6598.280865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.115 4.115 5 H 0.115 0.885 6 C -0.149 4.149 7 C -0.184 4.184 8 H 0.123 0.877 9 C 0.539 3.461 10 O -0.558 6.558 11 N -0.587 5.587 12 C 0.103 3.897 13 C 0.121 3.879 14 H 0.083 0.917 15 C -0.130 4.130 16 C -0.124 4.124 17 C 0.136 3.864 18 H 0.089 0.911 19 C 0.096 3.904 20 N -0.596 5.596 21 C -0.239 4.239 22 H 0.092 0.908 23 C 0.027 3.973 24 N -0.910 5.910 25 Si 0.880 3.120 26 H -0.286 1.286 27 H -0.261 1.261 28 H -0.303 1.303 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.533 16.854 -11.615 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.201 4.201 4 C -0.134 4.134 5 H 0.133 0.867 6 C -0.186 4.186 7 C -0.205 4.205 8 H 0.141 0.859 9 C 0.327 3.673 10 O -0.437 6.437 11 N -0.319 5.319 12 C -0.021 4.021 13 C 0.014 3.986 14 H 0.100 0.900 15 C -0.169 4.169 16 C -0.163 4.163 17 C 0.028 3.972 18 H 0.107 0.893 19 C -0.029 4.029 20 N -0.319 5.319 21 C -0.366 4.366 22 H 0.109 0.891 23 C -0.173 4.173 24 N -0.552 5.552 25 Si 0.712 3.288 26 H -0.214 1.214 27 H -0.186 1.186 28 H -0.231 1.231 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.588 16.908 -10.971 20.321 hybrid contribution -0.713 0.177 0.749 1.049 sum 1.874 17.085 -10.222 19.998 Atomic orbital electron populations 1.21822 0.94821 1.02055 1.01676 1.20730 0.95874 0.96016 0.95813 1.21797 1.01070 0.95487 1.01759 1.22446 1.01332 0.89509 1.00078 0.86662 1.23045 0.90772 1.02141 1.02676 1.22290 1.01050 1.00619 0.96512 0.85935 1.19567 0.76671 0.81557 0.89474 1.90638 1.53565 1.54731 1.44790 1.47958 1.66337 1.09185 1.08384 1.22332 0.99309 0.98146 0.82307 1.22226 0.92441 0.88676 0.95256 0.89999 1.22680 0.99336 0.98769 0.96106 1.22562 0.99383 0.98302 0.96045 1.21904 0.91559 0.92663 0.91078 0.89308 1.22457 1.00423 0.92078 0.87935 1.45426 1.85137 1.02101 0.99197 1.18604 1.31163 0.80717 1.06149 0.89072 1.25148 0.98454 0.95494 0.98163 1.69758 1.44447 1.17275 1.23764 0.86921 0.82973 0.78728 0.80154 1.21431 1.18647 1.23095 0.92468 0.92776 0.92524 0.91114 0.92510 0.92567 0.92696 0.88463 0.88017 0.90233 0.91259 0.91969 0.92159 0.92558 0.92083 0.90670 0.91240 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.03 37.16 0.34 -0.96 16 2 C -0.07 -0.57 3.07 -90.62 -0.28 -0.85 16 3 C -0.14 -1.11 9.17 37.15 0.34 -0.77 16 4 C -0.12 -1.26 4.66 -90.62 -0.42 -1.68 16 5 H 0.12 1.48 7.64 -51.93 -0.40 1.09 16 6 C -0.15 -1.56 9.88 -26.73 -0.26 -1.82 16 7 C -0.18 -2.26 4.41 -91.77 -0.40 -2.66 16 8 H 0.12 1.32 5.95 -51.93 -0.31 1.01 16 9 C 0.54 8.91 7.49 -10.99 -0.08 8.82 16 10 O -0.56 -10.97 15.72 5.56 0.09 -10.89 16 11 N -0.59 -10.07 2.25 -171.88 -0.39 -10.46 16 12 C 0.10 2.02 5.90 -3.21 -0.02 2.00 16 13 C 0.12 2.56 2.85 -65.66 -0.19 2.37 16 14 H 0.08 1.91 3.17 -51.93 -0.16 1.74 16 15 C -0.13 -2.41 5.99 -24.95 -0.15 -2.56 16 16 C -0.12 -2.03 6.21 -24.96 -0.15 -2.19 16 17 C 0.14 2.43 4.28 -65.98 -0.28 2.14 16 18 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 19 C 0.10 1.49 5.77 -3.52 -0.02 1.47 16 20 N -0.60 -13.47 2.52 -152.95 -0.38 -13.85 16 21 C -0.24 -6.43 10.76 -15.06 -0.16 -6.60 16 22 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 23 C 0.03 0.76 5.49 -17.43 -0.10 0.66 16 24 N -0.91 -27.39 13.97 55.49 0.78 -26.62 16 25 Si 0.88 21.90 24.67 -169.99 -4.19 17.71 16 26 H -0.29 -6.99 6.68 56.52 0.38 -6.61 16 27 H -0.26 -6.22 5.34 56.52 0.30 -5.92 16 28 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.52 7.29 -51.93 -0.38 0.14 16 32 H 0.07 0.56 7.90 -51.93 -0.41 0.15 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 0.85 8.05 -51.93 -0.42 0.43 16 38 H 0.08 1.55 7.11 -51.93 -0.37 1.18 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.06 1.19 6.82 -51.93 -0.35 0.83 16 41 H 0.06 1.07 7.84 -51.93 -0.41 0.66 16 42 H 0.06 0.81 7.83 -51.93 -0.41 0.40 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.92 5.61 -51.93 -0.29 0.62 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -30.96 346.20 -8.55 -39.51 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.81 Total: 1.99 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.85 Total: -2.61 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.00 Total: -50.93 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.19 Total: 17.71 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.96 -8.55 -39.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029534768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.194 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds