Wall clock time and date at job start Tue Mar 31 2020 08:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47232 * 2 1 4 4 C 1.53000 * 109.46982 * 120.00299 * 2 1 3 5 5 H 1.09007 * 115.55711 * 274.30369 * 4 2 1 6 6 C 1.53001 * 117.50009 * 128.62256 * 4 2 1 7 7 C 1.52999 * 117.50333 * 59.99714 * 4 2 1 8 8 H 1.08997 * 117.51633 * 0.02562 * 7 4 2 9 9 C 1.50697 * 117.49913 * 214.98043 * 7 4 2 10 10 O 1.21281 * 120.00214 * 359.97438 * 9 7 4 11 11 N 1.34777 * 119.99825 * 179.97438 * 9 7 4 12 12 C 1.47167 * 120.70616 * 180.02562 * 11 9 7 13 13 C 1.53893 * 108.03290 * 132.73692 * 12 11 9 14 14 H 1.08997 * 112.09750 * 181.90505 * 13 12 11 15 15 C 1.54549 * 107.82719 * 306.49713 * 13 12 11 16 16 C 1.54833 * 104.74067 * 88.94352 * 15 13 12 17 17 C 1.54542 * 104.74726 * 0.02562 * 16 15 13 18 18 H 1.09002 * 112.68423 * 146.80719 * 17 16 15 19 19 C 1.47159 * 120.71276 * 359.97421 * 11 9 7 20 20 N 1.48302 * 107.20468 * 58.35347 * 13 12 11 21 21 C 1.36935 * 128.07840 * 106.71316 * 20 13 12 22 22 H 1.07997 * 120.00382 * 206.63619 * 21 20 13 23 23 C 1.38813 * 120.00008 * 26.63190 * 21 20 13 24 24 N 1.31617 * 120.00262 * 195.70515 * 23 21 20 25 25 Si 1.86806 * 119.99979 * 15.70375 * 23 21 20 26 26 H 1.48507 * 109.46964 * 269.11182 * 25 23 21 27 27 H 1.48498 * 109.47005 * 29.10694 * 25 23 21 28 28 H 1.48497 * 109.47513 * 149.11122 * 25 23 21 29 29 H 1.09003 * 109.46994 * 299.99920 * 1 2 3 30 30 H 1.09002 * 109.46834 * 59.99843 * 1 2 3 31 31 H 1.08996 * 109.47173 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46974 * 239.99526 * 2 1 3 33 33 H 1.08999 * 109.47751 * 60.00352 * 3 2 1 34 34 H 1.09004 * 109.47455 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47339 * 299.99848 * 3 2 1 36 36 H 1.08998 * 117.49808 * 145.01933 * 6 4 2 37 37 H 1.08994 * 117.50018 * 359.97438 * 6 4 2 38 38 H 1.08997 * 109.75173 * 13.10216 * 12 11 9 39 39 H 1.09002 * 109.78828 * 252.38597 * 12 11 9 40 40 H 1.08991 * 110.36600 * 207.90895 * 15 13 12 41 41 H 1.09002 * 110.36435 * 330.22605 * 15 13 12 42 42 H 1.09005 * 110.30641 * 241.24783 * 16 15 13 43 43 H 1.09001 * 110.51790 * 118.86666 * 16 15 13 44 44 H 1.08999 * 109.74755 * 346.89999 * 19 11 9 45 45 H 1.09003 * 109.74813 * 107.58175 * 19 11 9 46 46 H 0.97004 * 119.99992 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1271 -0.1061 2.1448 6 6 3.0741 -1.8314 1.0513 7 6 1.6357 -2.1853 1.4343 8 1 1.0067 -2.6350 0.6661 9 6 1.3884 -2.6663 2.8408 10 8 1.5125 -1.9016 3.7740 11 7 1.0293 -3.9465 3.0618 12 6 0.7833 -4.4327 4.4289 13 6 -0.5406 -5.2171 4.4246 14 1 -0.8048 -5.5811 5.4174 15 6 -1.6291 -4.3048 3.8152 16 6 -1.5692 -4.5826 2.2932 17 6 -0.4508 -5.6365 2.1294 18 1 -0.6441 -6.3309 1.3117 19 6 0.8736 -4.8876 1.9413 20 7 -0.3939 -6.3200 3.4441 21 6 -0.2370 -7.6571 3.6942 22 1 0.2712 -8.2847 2.9772 23 6 -0.7312 -8.2060 4.8696 24 7 -0.3260 -9.3952 5.2619 25 14 -1.9712 -7.2567 5.8947 26 1 -1.2541 -6.4286 6.8973 27 1 -2.7748 -6.3762 5.0091 28 1 -2.8704 -8.2105 6.5924 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.8415 -1.9466 1.8168 37 1 3.3909 -2.0482 0.0312 38 1 0.7083 -3.5872 5.1127 39 1 1.5979 -5.0868 4.7400 40 1 -2.6096 -4.5663 4.2129 41 1 -1.4036 -3.2578 4.0178 42 1 -1.3144 -3.6713 1.7520 43 1 -2.5202 -4.9812 1.9398 44 1 0.8576 -4.3392 0.9994 45 1 1.7001 -5.5982 1.9396 46 1 -0.6716 -9.7789 6.0831 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029534768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:19 Heat of formation + Delta-G solvation = 5.018223 kcal Electronic energy + Delta-G solvation = -25032.300557 eV Core-core repulsion = 21729.769387 eV Total energy + Delta-G solvation = -3302.531171 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87253 -40.11533 -38.24225 -35.56655 -34.36535 -34.11184 -32.58580 -31.74342 -28.35567 -27.93055 -26.14523 -25.58578 -24.40241 -23.71300 -21.78903 -21.36569 -20.72963 -19.88260 -18.80841 -18.15269 -17.49772 -16.93629 -16.72092 -15.83868 -15.55778 -15.25904 -15.14688 -15.07526 -14.77120 -14.66413 -14.18386 -13.95040 -13.72953 -13.61938 -13.41120 -13.25024 -13.05406 -12.96061 -12.84510 -12.53582 -12.23707 -12.12148 -12.00026 -11.82308 -11.62637 -11.51235 -11.47749 -11.28909 -11.16847 -10.98700 -10.83957 -10.62075 -9.85178 -8.92363 -8.19192 -5.51957 1.25112 1.36198 1.45293 1.52249 1.96932 2.38311 2.88955 2.98135 3.19393 3.43580 3.78513 3.80199 3.85370 3.90839 4.01581 4.09858 4.12275 4.16357 4.26702 4.39678 4.44785 4.49374 4.55731 4.60709 4.71907 4.75593 4.81097 4.84562 4.88774 4.89890 4.96560 5.01312 5.04405 5.08780 5.11654 5.19301 5.27048 5.32726 5.33098 5.49682 5.52329 5.59328 5.71004 6.11969 6.52160 6.68028 7.18983 7.47744 8.16975 9.00909 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.004292 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.698491 B = 6522.554028 C = 6598.280865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 C -0.144 4.144 4 C -0.111 4.111 5 H 0.089 0.911 6 C -0.136 4.136 7 C -0.190 4.190 8 H 0.150 0.850 9 C 0.537 3.463 10 O -0.595 6.595 11 N -0.589 5.589 12 C 0.111 3.889 13 C 0.113 3.887 14 H 0.058 0.942 15 C -0.125 4.125 16 C -0.113 4.113 17 C 0.129 3.871 18 H 0.100 0.900 19 C 0.103 3.897 20 N -0.615 5.615 21 C -0.217 4.217 22 H 0.065 0.935 23 C -0.033 4.033 24 N -0.959 5.959 25 Si 0.937 3.063 26 H -0.287 1.287 27 H -0.243 1.243 28 H -0.314 1.314 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.123 0.877 45 H 0.057 0.943 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 19.394 -14.763 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 C -0.201 4.201 4 C -0.130 4.130 5 H 0.107 0.893 6 C -0.173 4.173 7 C -0.211 4.211 8 H 0.167 0.833 9 C 0.327 3.673 10 O -0.477 6.477 11 N -0.320 5.320 12 C -0.015 4.015 13 C 0.006 3.994 14 H 0.075 0.925 15 C -0.164 4.164 16 C -0.152 4.152 17 C 0.023 3.977 18 H 0.118 0.882 19 C -0.021 4.021 20 N -0.338 5.338 21 C -0.345 4.345 22 H 0.083 0.917 23 C -0.228 4.228 24 N -0.606 5.606 25 Si 0.768 3.232 26 H -0.215 1.215 27 H -0.167 1.167 28 H -0.243 1.243 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.152 0.848 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.140 0.860 45 H 0.075 0.925 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.162 19.504 -14.170 24.205 hybrid contribution -0.459 -0.541 1.687 1.830 sum 1.704 18.964 -12.483 22.768 Atomic orbital electron populations 1.21838 0.94853 1.02088 1.01691 1.20749 0.95770 0.96253 0.95091 1.21801 1.01293 0.95106 1.01944 1.22455 1.01437 0.88805 1.00283 0.89265 1.23173 0.89375 1.00859 1.03918 1.22299 1.03027 1.01792 0.93979 0.83286 1.20326 0.75275 0.80629 0.91033 1.90626 1.54896 1.55572 1.46583 1.48006 1.66580 1.09891 1.07527 1.22001 0.97745 0.97419 0.84293 1.22292 0.94155 0.88822 0.94091 0.92463 1.22625 0.97772 0.98400 0.97614 1.22531 0.99163 0.98992 0.94518 1.22210 0.93462 0.93088 0.88930 0.88221 1.22478 0.98488 0.91949 0.89180 1.45492 1.85395 1.01019 1.01939 1.18520 1.28726 0.82511 1.04779 0.91735 1.25728 1.00677 0.96455 0.99912 1.69889 1.46567 1.19437 1.24701 0.86000 0.80840 0.77365 0.78960 1.21506 1.16690 1.24319 0.93989 0.91305 0.92440 0.89158 0.93570 0.92274 0.91311 0.89924 0.84775 0.90499 0.93555 0.92444 0.91304 0.89431 0.91141 0.85962 0.92475 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.03 71.98 0.65 -1.40 16 2 C -0.06 -0.81 3.07 -10.80 -0.03 -0.84 16 3 C -0.14 -1.80 9.17 71.98 0.66 -1.14 16 4 C -0.11 -2.10 4.66 -10.79 -0.05 -2.15 16 5 H 0.09 2.20 7.64 -2.38 -0.02 2.18 16 6 C -0.14 -2.35 9.88 30.60 0.30 -2.05 16 7 C -0.19 -3.95 4.41 -11.54 -0.05 -4.00 16 8 H 0.15 2.30 5.95 -2.39 -0.01 2.29 16 9 C 0.54 16.58 7.49 87.66 0.66 17.23 16 10 O -0.59 -22.99 15.72 -3.03 -0.05 -23.04 16 11 N -0.59 -19.04 2.25 -816.10 -1.84 -20.88 16 12 C 0.11 4.32 5.90 86.55 0.51 4.83 16 13 C 0.11 4.71 2.85 45.47 0.13 4.84 16 14 H 0.06 2.67 3.17 -2.39 -0.01 2.66 16 15 C -0.13 -4.34 5.99 31.75 0.19 -4.15 16 16 C -0.11 -3.26 6.21 31.74 0.20 -3.07 16 17 C 0.13 4.25 4.28 45.28 0.19 4.44 16 18 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 19 C 0.10 2.86 5.77 86.36 0.50 3.36 16 20 N -0.62 -27.35 2.52 -637.81 -1.60 -28.96 16 21 C -0.22 -11.85 10.76 84.03 0.90 -10.94 16 22 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 23 C -0.03 -1.91 5.49 84.86 0.47 -1.44 16 24 N -0.96 -60.02 13.97 21.65 0.30 -59.72 16 25 Si 0.94 46.47 24.67 68.60 1.69 48.16 16 26 H -0.29 -14.02 6.68 99.48 0.66 -13.36 16 27 H -0.24 -11.11 5.34 99.48 0.53 -10.58 16 28 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.79 7.29 -2.39 -0.02 0.77 16 32 H 0.09 0.92 7.90 -2.39 -0.02 0.90 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.13 1.50 8.05 -2.39 -0.02 1.48 16 38 H 0.08 3.02 7.11 -2.39 -0.02 3.00 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 2.04 6.82 -2.39 -0.02 2.03 16 41 H 0.07 2.27 7.84 -2.39 -0.02 2.25 16 42 H 0.09 2.02 7.83 -2.38 -0.02 2.00 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.12 2.29 5.61 -2.39 -0.01 2.28 16 45 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 46 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -70.27 346.20 4.46 -65.81 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.73 Total: 15.11 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 5.22 Total: 3.51 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.14 Total: -109.55 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.04 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.69 Total: 48.16 kcal Total: -70.27 4.46 -65.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029534768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.824 kcal (2) G-P(sol) polarization free energy of solvation -70.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds