Wall clock time and date at job start Tue Mar 31 2020 08:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50704 * 119.99776 * 2 1 4 4 C 1.30998 * 120.00253 * 180.02562 * 2 1 3 5 5 C 1.50697 * 119.99707 * 359.97438 * 4 2 1 6 6 H 1.09003 * 115.55146 * 334.32878 * 5 4 2 7 7 C 1.53075 * 117.49153 * 188.60541 * 5 4 2 8 8 H 1.09004 * 117.51458 * 145.04163 * 7 5 4 9 9 C 1.50698 * 117.49861 * 359.97438 * 7 5 4 10 10 O 1.21279 * 120.00073 * 268.29496 * 9 7 5 11 11 N 1.34781 * 119.99957 * 88.28693 * 9 7 5 12 12 C 1.46497 * 119.99806 * 180.02562 * 11 9 7 13 13 C 1.53945 * 113.74123 * 251.67980 * 12 11 9 14 14 N 1.47582 * 86.11988 * 222.05035 * 13 12 11 15 15 C 1.36935 * 134.49483 * 204.64941 * 14 13 12 16 16 H 1.08002 * 119.99714 * 179.97438 * 15 14 13 17 17 C 1.38805 * 120.00141 * 359.97438 * 15 14 13 18 18 N 1.31620 * 120.00117 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00363 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46887 * 59.99796 * 19 17 15 21 21 H 1.48501 * 109.47085 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46729 * 300.00262 * 19 17 15 23 23 C 1.47583 * 91.01256 * 24.63489 * 14 13 12 24 24 C 1.52995 * 59.98483 * 252.51251 * 7 5 4 25 25 C 1.53001 * 117.50292 * 252.50193 * 24 7 5 26 26 C 1.53000 * 117.49769 * 107.50015 * 24 7 5 27 27 H 1.09011 * 109.46863 * 240.00417 * 1 2 3 28 28 H 1.09006 * 109.47515 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47679 * 120.00252 * 1 2 3 30 30 H 1.09003 * 109.47085 * 270.00201 * 3 2 1 31 31 H 1.08994 * 109.47304 * 30.00459 * 3 2 1 32 32 H 1.08997 * 109.47034 * 150.00959 * 3 2 1 33 33 H 1.07999 * 120.00181 * 180.02562 * 4 2 1 34 34 H 0.96999 * 119.99965 * 0.02562 * 11 9 7 35 35 H 1.09003 * 112.94902 * 23.41040 * 12 11 9 36 36 H 1.09006 * 113.76954 * 336.34505 * 13 12 11 37 37 H 1.08998 * 113.77170 * 107.74669 * 13 12 11 38 38 H 0.97001 * 120.00358 * 180.02562 * 18 17 15 39 39 H 1.09001 * 113.77049 * 221.05969 * 23 14 13 40 40 H 1.09003 * 113.86590 * 89.67843 * 23 14 13 41 41 H 1.09002 * 109.46967 * 248.74413 * 25 24 7 42 42 H 1.09002 * 109.47630 * 128.74384 * 25 24 7 43 43 H 1.08996 * 109.47040 * 8.74169 * 25 24 7 44 44 H 1.09007 * 109.47044 * 198.70777 * 26 24 7 45 45 H 1.08999 * 109.47232 * 318.70747 * 26 24 7 46 46 H 1.08994 * 109.47165 * 78.70912 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1620 -1.1344 -0.0005 5 6 1.4085 -2.4395 -0.0005 6 1 0.4060 -2.4036 0.4259 7 6 2.2180 -3.7228 0.2021 8 1 1.7481 -4.5315 0.7619 9 6 3.7073 -3.5844 0.3856 10 8 4.4444 -3.6383 -0.5760 11 7 4.2202 -3.4005 1.6184 12 6 5.6680 -3.2654 1.7967 13 6 6.3271 -4.4867 2.4629 14 7 7.1118 -3.5112 3.2443 15 6 8.3234 -3.5443 3.8815 16 1 8.6854 -2.6682 4.3990 17 6 9.0862 -4.7038 3.8623 18 7 8.6452 -5.7713 3.2312 19 14 10.7387 -4.7494 4.7322 20 1 10.5448 -4.4714 6.1781 21 1 11.3496 -6.0925 4.5644 22 1 11.6350 -3.7205 4.1462 23 6 6.0664 -2.4854 3.0627 24 6 1.6426 -3.3904 -1.1760 25 6 0.4516 -4.2184 -1.6629 26 6 2.6233 -2.9432 -2.2619 27 1 -0.3633 -0.5138 0.8901 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5139 -0.8899 30 1 2.4420 1.6198 -1.0277 31 1 1.6714 2.0647 0.5139 32 1 3.2129 1.1748 0.5137 33 1 3.2420 -1.1344 -0.0001 34 1 3.6307 -3.3577 2.3875 35 1 6.1776 -2.9273 0.8944 36 1 5.6410 -5.0820 3.0655 37 1 6.9279 -5.0883 1.7808 38 1 9.1780 -6.5818 3.2181 39 1 6.4591 -1.4890 2.8596 40 1 5.3030 -2.4912 3.8408 41 1 0.7628 -4.8467 -2.4975 42 1 -0.3463 -3.5509 -1.9883 43 1 0.0899 -4.8476 -0.8496 44 1 2.0781 -2.4330 -3.0561 45 1 3.3578 -2.2632 -1.8305 46 1 3.1325 -3.8149 -2.6729 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030646651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:05 Heat of formation + Delta-G solvation = 45.700668 kcal Electronic energy + Delta-G solvation = -23790.430068 eV Core-core repulsion = 20489.663021 eV Total energy + Delta-G solvation = -3300.767047 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.37322 -38.40160 -37.02476 -35.56894 -33.44111 -31.80039 -29.82819 -28.08338 -27.84271 -27.39935 -26.82730 -24.80519 -24.00057 -22.26899 -20.18266 -19.69456 -18.81458 -17.97108 -16.77293 -16.43299 -15.73306 -15.60872 -14.88342 -14.53475 -14.29330 -14.09564 -13.78658 -13.69430 -13.60984 -13.28238 -12.89541 -12.63228 -12.58691 -12.23549 -12.21595 -12.00108 -11.80152 -11.73019 -11.51030 -11.42517 -11.35307 -10.88257 -10.85053 -10.76899 -10.50659 -10.33239 -10.04830 -9.86095 -9.53693 -9.30288 -8.80001 -8.54506 -8.35181 -6.91283 -5.76644 -3.10802 1.96055 2.91432 3.38717 3.42104 3.45452 3.47005 3.85310 4.41728 4.47666 4.63548 4.77043 4.83855 4.95949 5.03875 5.12429 5.17777 5.32434 5.37707 5.44774 5.49438 5.52695 5.54580 5.59094 5.62135 5.62811 5.78120 5.83593 5.85449 5.93351 6.01273 6.02990 6.08236 6.20526 6.23904 6.43566 6.53674 6.58302 6.59220 6.81184 6.83170 7.24690 7.39262 7.57187 7.95923 7.98395 8.64939 9.03407 9.69629 10.56716 11.39909 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.022686 B = 0.003418 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.925621 B = 8189.787210 C = 8972.429357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.131 4.131 3 C -0.116 4.116 4 C -0.130 4.130 5 C -0.096 4.096 6 H 0.114 0.886 7 C -0.178 4.178 8 H 0.125 0.875 9 C 0.543 3.457 10 O -0.537 6.537 11 N -0.712 5.712 12 C 0.093 3.907 13 C 0.154 3.846 14 N -0.606 5.606 15 C -0.227 4.227 16 H 0.081 0.919 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.914 3.086 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.283 1.283 23 C 0.112 3.888 24 C -0.082 4.082 25 C -0.116 4.116 26 C -0.106 4.106 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.396 0.604 35 H 0.110 0.890 36 H 0.027 0.973 37 H 0.076 0.924 38 H 0.255 0.745 39 H 0.048 0.952 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.059 8.776 -7.699 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.131 4.131 3 C -0.173 4.173 4 C -0.148 4.148 5 C -0.115 4.115 6 H 0.132 0.868 7 C -0.199 4.199 8 H 0.143 0.857 9 C 0.328 3.672 10 O -0.414 6.414 11 N -0.361 5.361 12 C -0.012 4.012 13 C 0.028 3.972 14 N -0.333 5.333 15 C -0.354 4.354 16 H 0.099 0.901 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.744 3.256 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.210 1.210 23 C -0.015 4.015 24 C -0.083 4.083 25 C -0.173 4.173 26 C -0.163 4.163 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.230 0.770 35 H 0.128 0.872 36 H 0.045 0.955 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.180 8.580 -8.284 22.585 hybrid contribution 0.595 -0.266 1.209 1.373 sum -18.585 8.314 -7.075 21.554 Atomic orbital electron populations 1.20812 0.92474 1.01963 1.01869 1.21490 0.95672 0.94834 1.01119 1.20831 0.99847 0.94687 1.01937 1.21988 0.98996 0.91678 1.02109 1.21463 0.98809 0.88395 1.02785 0.86783 1.22627 0.93284 1.01109 1.02862 0.85686 1.19506 0.88389 0.75993 0.83296 1.90689 1.60985 1.50142 1.39592 1.46115 1.08959 1.72803 1.08259 1.23859 0.78102 1.00380 0.98869 1.22667 0.90952 0.91640 0.91975 1.45663 1.15626 1.09610 1.62408 1.18936 0.91704 0.97790 1.26995 0.90133 1.24815 0.98992 0.95718 1.00745 1.69822 1.38139 1.02364 1.46175 0.86173 0.83371 0.76837 0.79194 1.21151 1.21509 1.20972 1.22868 0.91241 0.94188 0.93165 1.21601 0.98103 0.99367 0.89218 1.21368 0.95610 0.98885 1.01419 1.21332 0.97054 1.01842 0.96046 0.91669 0.92403 0.91678 0.91643 0.92009 0.91745 0.87005 0.77029 0.87244 0.95486 0.90568 0.93489 0.93417 0.94788 0.91713 0.92031 0.92332 0.93472 0.91181 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 8.76 36.00 0.32 -0.57 16 2 C -0.13 -1.29 6.05 -101.07 -0.61 -1.90 16 3 C -0.12 -1.05 9.97 36.01 0.36 -0.69 16 4 C -0.13 -1.47 7.30 -36.03 -0.26 -1.73 16 5 C -0.10 -0.99 5.12 -91.73 -0.47 -1.46 16 6 H 0.11 0.97 6.80 -51.93 -0.35 0.62 16 7 C -0.18 -2.13 5.83 -91.74 -0.53 -2.67 16 8 H 0.13 1.28 8.05 -51.93 -0.42 0.87 16 9 C 0.54 8.61 5.72 -10.98 -0.06 8.55 16 10 O -0.54 -10.45 13.41 5.56 0.07 -10.38 16 11 N -0.71 -11.21 5.36 -55.34 -0.30 -11.50 16 12 C 0.09 1.84 4.43 -70.14 -0.31 1.52 16 13 C 0.15 3.75 7.32 -2.97 -0.02 3.73 16 14 N -0.61 -15.79 3.70 -178.07 -0.66 -16.45 16 15 C -0.23 -6.45 10.70 -15.06 -0.16 -6.61 16 16 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 18 N -0.92 -27.77 11.38 55.49 0.63 -27.14 16 19 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.11 2.28 8.69 -2.97 -0.03 2.26 16 24 C -0.08 -0.91 2.69 -154.51 -0.42 -1.33 16 25 C -0.12 -0.99 9.85 37.16 0.37 -0.62 16 26 C -0.11 -1.35 7.72 37.16 0.29 -1.06 16 27 H 0.06 0.47 7.54 -51.92 -0.39 0.08 16 28 H 0.06 0.39 7.94 -51.93 -0.41 -0.02 16 29 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.47 8.05 -51.93 -0.42 0.05 16 32 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 33 H 0.11 1.53 6.68 -52.49 -0.35 1.18 16 34 H 0.40 5.24 8.73 -40.82 -0.36 4.89 16 35 H 0.11 2.36 7.46 -51.93 -0.39 1.97 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 2.11 7.15 -51.93 -0.37 1.74 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.64 8.12 -51.93 -0.42 0.22 16 41 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 1.03 5.14 -51.93 -0.27 0.77 16 46 H 0.06 0.91 7.93 -51.93 -0.41 0.50 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -32.50 368.96 -9.25 -41.75 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.89 Total: 3.67 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.65 Total: -2.84 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.32 Total: -55.10 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.38 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.50 -9.25 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030646651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.452 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds