Wall clock time and date at job start Tue Mar 31 2020 08:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50701 * 119.99888 * 2 1 4 4 C 1.31000 * 119.99908 * 179.97438 * 2 1 3 5 5 C 1.50698 * 120.00021 * 0.02562 * 4 2 1 6 6 H 1.08996 * 115.56428 * 334.29464 * 5 4 2 7 7 C 1.53002 * 117.49667 * 188.60364 * 5 4 2 8 8 H 1.09001 * 117.49964 * 0.02628 * 7 5 4 9 9 C 1.50705 * 117.49649 * 145.01827 * 7 5 4 10 10 O 1.21277 * 120.00181 * 332.89975 * 9 7 5 11 11 N 1.34776 * 119.99443 * 152.89134 * 9 7 5 12 12 C 1.46503 * 119.99859 * 180.02562 * 11 9 7 13 13 C 1.53492 * 114.20897 * 205.00634 * 12 11 9 14 14 N 1.47060 * 87.98767 * 220.14603 * 13 12 11 15 15 C 1.36936 * 136.06447 * 207.08620 * 14 13 12 16 16 H 1.08003 * 119.99643 * 7.83052 * 15 14 13 17 17 C 1.38811 * 120.00536 * 187.83135 * 15 14 13 18 18 N 1.31624 * 119.99857 * 195.10249 * 17 15 14 19 19 Si 1.86800 * 119.99722 * 15.10761 * 17 15 14 20 20 H 1.48494 * 109.46952 * 269.99744 * 19 17 15 21 21 H 1.48504 * 109.47171 * 30.00001 * 19 17 15 22 22 H 1.48501 * 109.46690 * 149.99790 * 19 17 15 23 23 C 1.47072 * 87.88554 * 27.33751 * 14 13 12 24 24 C 1.52995 * 60.03348 * 252.52724 * 7 5 4 25 25 C 1.53002 * 117.50134 * 107.48286 * 24 7 5 26 26 C 1.53006 * 117.49719 * 252.47709 * 24 7 5 27 27 H 1.08998 * 109.47329 * 240.00503 * 1 2 3 28 28 H 1.09002 * 109.47576 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46976 * 120.00692 * 1 2 3 30 30 H 1.09004 * 109.46236 * 269.99414 * 3 2 1 31 31 H 1.08995 * 109.47323 * 29.98804 * 3 2 1 32 32 H 1.08995 * 109.47149 * 150.00240 * 3 2 1 33 33 H 1.08002 * 119.99741 * 180.02562 * 4 2 1 34 34 H 0.97002 * 120.00532 * 0.02562 * 11 9 7 35 35 H 1.09005 * 113.27866 * 338.07237 * 12 11 9 36 36 H 1.09000 * 113.47002 * 105.36422 * 13 12 11 37 37 H 1.09003 * 113.46630 * 334.92472 * 13 12 11 38 38 H 0.96995 * 120.00404 * 354.93185 * 18 17 15 39 39 H 1.09001 * 113.46279 * 87.43967 * 23 14 13 40 40 H 1.08987 * 113.47198 * 217.87810 * 23 14 13 41 41 H 1.08997 * 109.47062 * 111.38988 * 25 24 7 42 42 H 1.09000 * 109.46586 * 231.39087 * 25 24 7 43 43 H 1.08996 * 109.46632 * 351.38833 * 25 24 7 44 44 H 1.08999 * 109.47009 * 65.37562 * 26 24 7 45 45 H 1.09000 * 109.46793 * 185.37311 * 26 24 7 46 46 H 1.08999 * 109.47020 * 305.37611 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4084 -2.4396 0.0005 6 1 0.4058 -2.4038 0.4266 7 6 2.2173 -3.7223 0.2041 8 1 3.2943 -3.6221 0.3385 9 6 1.5667 -4.8395 0.9786 10 8 0.7168 -4.5887 1.8066 11 7 1.9294 -6.1174 0.7508 12 6 1.2966 -7.2036 1.5033 13 6 2.1537 -8.4717 1.6189 14 7 0.9280 -9.2567 1.4088 15 6 0.4855 -10.5056 1.7545 16 1 1.0646 -11.1152 2.4324 17 6 -0.7072 -10.9883 1.2338 18 7 -1.2848 -12.0392 1.7764 19 14 -1.4926 -10.1463 -0.2372 20 1 -2.4167 -9.0844 0.2355 21 1 -0.4339 -9.5403 -1.0842 22 1 -2.2514 -11.1450 -1.0322 23 6 0.3889 -8.1125 0.6583 24 6 1.6437 -3.3913 -1.1751 25 6 2.6258 -2.9447 -2.2600 26 6 0.4539 -4.2204 -1.6629 27 1 -0.3634 -0.5137 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5140 -0.8900 30 1 2.4421 1.6196 -1.0278 31 1 1.6713 2.0648 0.5136 32 1 3.2128 1.1748 0.5138 33 1 3.2420 -1.1345 0.0009 34 1 2.6093 -6.3180 0.0888 35 1 0.8547 -6.8754 2.4441 36 1 2.5936 -8.6097 2.6066 37 1 2.8811 -8.5788 0.8142 38 1 -0.8414 -12.5207 2.4922 39 1 0.6511 -8.1250 -0.3996 40 1 -0.6745 -7.9446 0.8276 41 1 2.6938 -3.7151 -3.0280 42 1 2.2742 -2.0152 -2.7078 43 1 3.6088 -2.7855 -1.8169 44 1 -0.4081 -4.0300 -1.0235 45 1 0.2136 -3.9423 -2.6890 46 1 0.7086 -5.2795 -1.6236 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030646652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:09 Heat of formation + Delta-G solvation = 48.181774 kcal Electronic energy + Delta-G solvation = -23606.020010 eV Core-core repulsion = 20305.360552 eV Total energy + Delta-G solvation = -3300.659459 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.42035 -38.84565 -37.48835 -35.72169 -33.65359 -32.11518 -29.95391 -28.36866 -28.11156 -27.63014 -26.93164 -25.31451 -23.91800 -21.90314 -20.29110 -19.88376 -19.21871 -18.18903 -17.45446 -16.60448 -16.16469 -15.42739 -15.19794 -14.96787 -14.47019 -14.35096 -14.00003 -13.81590 -13.54667 -13.34972 -13.21766 -12.77180 -12.68712 -12.62459 -12.36754 -12.16408 -12.07982 -12.01476 -11.88062 -11.58448 -11.54586 -11.46162 -11.00577 -10.65514 -10.57596 -10.20499 -10.07690 -9.78490 -9.58754 -9.26546 -8.77664 -8.67845 -8.54810 -7.22847 -6.33474 -3.26270 1.83767 2.68034 3.25046 3.43017 3.47411 3.62096 3.67243 4.36301 4.51456 4.57980 4.58506 4.71877 4.76404 4.84725 4.88856 5.05275 5.13235 5.15662 5.26861 5.36695 5.37967 5.41109 5.43330 5.49185 5.55458 5.64806 5.66701 5.73804 5.75420 5.78429 5.81212 5.94101 5.97143 6.04574 6.14649 6.18130 6.28507 6.36773 6.42783 6.46008 6.69009 7.00058 7.07060 7.72340 8.21507 8.41853 8.94634 9.47427 10.32312 11.16782 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.027680 B = 0.003284 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.313663 B = 8523.372993 C = 8726.030122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.132 4.132 5 C -0.083 4.083 6 H 0.119 0.881 7 C -0.177 4.177 8 H 0.126 0.874 9 C 0.544 3.456 10 O -0.540 6.540 11 N -0.711 5.711 12 C 0.102 3.898 13 C 0.112 3.888 14 N -0.618 5.618 15 C -0.306 4.306 16 H 0.084 0.916 17 C -0.022 4.022 18 N -0.929 5.929 19 Si 1.062 2.938 20 H -0.292 1.292 21 H -0.282 1.282 22 H -0.295 1.295 23 C 0.090 3.910 24 C -0.093 4.093 25 C -0.112 4.112 26 C -0.125 4.125 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.399 0.601 35 H 0.121 0.879 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.262 0.738 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.686 25.140 -8.694 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.127 4.127 3 C -0.172 4.172 4 C -0.150 4.150 5 C -0.102 4.102 6 H 0.137 0.863 7 C -0.198 4.198 8 H 0.144 0.856 9 C 0.330 3.670 10 O -0.416 6.416 11 N -0.361 5.361 12 C -0.004 4.004 13 C -0.016 4.016 14 N -0.346 5.346 15 C -0.432 4.432 16 H 0.101 0.899 17 C -0.221 4.221 18 N -0.570 5.570 19 Si 0.893 3.107 20 H -0.220 1.220 21 H -0.209 1.209 22 H -0.222 1.222 23 C -0.036 4.036 24 C -0.093 4.093 25 C -0.169 4.169 26 C -0.182 4.182 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.233 0.767 35 H 0.139 0.861 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.649 25.009 -8.984 27.653 hybrid contribution 1.914 -0.296 0.688 2.055 sum 9.563 24.714 -8.297 27.768 Atomic orbital electron populations 1.20855 0.92262 1.02037 1.02435 1.21548 0.95985 0.94738 1.00428 1.20831 0.99631 0.94880 1.01866 1.21901 0.98476 0.91730 1.02881 1.21491 0.99947 0.87835 1.00908 0.86300 1.22598 1.00216 0.96799 1.00151 0.85579 1.19597 0.81952 0.83110 0.82326 1.90698 1.32451 1.83782 1.34708 1.45966 1.42447 1.05773 1.41888 1.23435 0.96109 0.84204 0.96649 1.22674 0.91277 0.88395 0.99236 1.45897 1.12750 1.13481 1.62458 1.20099 1.07749 0.90244 1.25151 0.89879 1.25796 0.94663 0.98755 1.02894 1.70902 1.37189 1.21385 1.27570 0.83776 0.75640 0.74759 0.76486 1.21959 1.20871 1.22197 1.23144 0.98219 0.86726 0.95559 1.21697 0.98719 1.00374 0.88541 1.21347 0.97355 1.01236 0.96982 1.21462 0.95825 0.99473 1.01415 0.91245 0.92364 0.91481 0.91605 0.91885 0.91996 0.87280 0.76678 0.86142 0.93078 0.94510 0.92765 0.93599 0.92707 0.91890 0.91827 0.92302 0.91924 0.91608 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 8.76 36.00 0.32 -0.67 16 2 C -0.13 -1.07 6.05 -101.07 -0.61 -1.68 16 3 C -0.12 -0.75 9.97 36.01 0.36 -0.40 16 4 C -0.13 -1.19 8.27 -36.03 -0.30 -1.49 16 5 C -0.08 -0.89 4.56 -91.73 -0.42 -1.30 16 6 H 0.12 1.49 6.47 -51.93 -0.34 1.15 16 7 C -0.18 -1.93 5.52 -91.77 -0.51 -2.44 16 8 H 0.13 1.14 8.05 -51.93 -0.42 0.72 16 9 C 0.54 8.03 6.44 -10.98 -0.07 7.96 16 10 O -0.54 -10.23 16.19 5.56 0.09 -10.14 16 11 N -0.71 -10.08 5.39 -53.49 -0.29 -10.37 16 12 C 0.10 1.85 4.62 -67.68 -0.31 1.53 16 13 C 0.11 2.16 8.44 -8.51 -0.07 2.09 16 14 N -0.62 -15.31 3.62 -184.63 -0.67 -15.98 16 15 C -0.31 -8.90 11.03 -15.06 -0.17 -9.07 16 16 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 17 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 18 N -0.93 -29.55 13.70 55.49 0.76 -28.79 16 19 Si 1.06 26.99 25.50 -169.99 -4.34 22.66 16 20 H -0.29 -7.24 6.97 56.52 0.39 -6.85 16 21 H -0.28 -6.59 5.65 56.52 0.32 -6.28 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 23 C 0.09 1.94 5.43 -8.37 -0.05 1.90 16 24 C -0.09 -0.89 2.70 -154.47 -0.42 -1.31 16 25 C -0.11 -0.83 8.80 37.16 0.33 -0.50 16 26 C -0.12 -1.32 8.94 37.16 0.33 -0.99 16 27 H 0.07 0.63 7.54 -51.93 -0.39 0.24 16 28 H 0.06 0.40 7.94 -51.93 -0.41 -0.01 16 29 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.37 8.05 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 8.06 -51.93 -0.42 -0.04 16 33 H 0.11 0.87 8.04 -52.49 -0.42 0.45 16 34 H 0.40 4.52 8.76 -40.82 -0.36 4.16 16 35 H 0.12 2.41 7.45 -51.93 -0.39 2.02 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 38 H 0.26 8.21 8.73 -40.82 -0.36 7.86 16 39 H 0.05 0.94 7.02 -51.93 -0.36 0.58 16 40 H 0.05 1.26 6.22 -51.94 -0.32 0.94 16 41 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 44 H 0.06 0.75 7.88 -51.93 -0.41 0.34 16 45 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 46 H 0.07 0.76 8.01 -51.93 -0.42 0.35 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -33.89 370.10 -8.64 -42.53 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.10 Total: 1.63 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.68 Total: -7.11 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.20 Total: -55.14 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 26.99 SS G_CDS: -4.34 Total: 22.66 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.89 -8.64 -42.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030646652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.708 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds