Wall clock time and date at job start Tue Mar 31 2020 08:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50698 * 120.00391 * 2 1 4 4 C 1.30997 * 119.99755 * 180.02562 * 2 1 3 5 5 C 1.50701 * 120.00355 * 359.97438 * 4 2 1 6 6 H 1.09003 * 115.55651 * 25.70054 * 5 4 2 7 7 C 1.52992 * 117.50402 * 171.39168 * 5 4 2 8 8 H 1.09003 * 117.49628 * 359.97438 * 7 5 4 9 9 C 1.50699 * 117.50443 * 214.98138 * 7 5 4 10 10 O 1.21286 * 120.00020 * 67.08509 * 9 7 5 11 11 N 1.34779 * 120.00057 * 247.09913 * 9 7 5 12 12 C 1.46496 * 120.00032 * 179.97438 * 11 9 7 13 13 C 1.53498 * 114.20655 * 204.99166 * 12 11 9 14 14 N 1.47067 * 87.98446 * 220.34733 * 13 12 11 15 15 C 1.36939 * 136.05414 * 207.08995 * 14 13 12 16 16 H 1.07999 * 120.00169 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99898 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00145 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00060 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47377 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.47016 * 299.99756 * 19 17 15 22 22 H 1.48498 * 109.47099 * 59.99640 * 19 17 15 23 23 C 1.47060 * 87.88835 * 27.34482 * 14 13 12 24 24 C 1.53000 * 60.03123 * 107.47751 * 7 5 4 25 25 C 1.52999 * 117.49701 * 107.50355 * 24 7 5 26 26 C 1.52998 * 117.49915 * 252.49510 * 24 7 5 27 27 H 1.09001 * 109.46924 * 240.00265 * 1 2 3 28 28 H 1.09005 * 109.46874 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47620 * 119.99730 * 1 2 3 30 30 H 1.09002 * 109.47499 * 270.00698 * 3 2 1 31 31 H 1.09008 * 109.46990 * 30.00019 * 3 2 1 32 32 H 1.09000 * 109.47487 * 150.00101 * 3 2 1 33 33 H 1.08003 * 119.99955 * 179.97438 * 4 2 1 34 34 H 0.96997 * 119.99730 * 359.97438 * 11 9 7 35 35 H 1.09001 * 113.28427 * 338.06720 * 12 11 9 36 36 H 1.08998 * 113.46535 * 105.56706 * 13 12 11 37 37 H 1.08994 * 113.46666 * 335.12957 * 13 12 11 38 38 H 0.96998 * 120.00437 * 179.97438 * 18 17 15 39 39 H 1.08993 * 113.46985 * 87.43594 * 23 14 13 40 40 H 1.08996 * 113.47007 * 217.87725 * 23 14 13 41 41 H 1.09007 * 109.47119 * 109.32520 * 25 24 7 42 42 H 1.09000 * 109.47403 * 229.32820 * 25 24 7 43 43 H 1.09000 * 109.47402 * 349.33432 * 25 24 7 44 44 H 1.09002 * 109.47638 * 8.61422 * 26 24 7 45 45 H 1.09004 * 109.46660 * 128.60850 * 26 24 7 46 46 H 1.08992 * 109.47875 * 248.60946 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1619 -1.1345 -0.0005 5 6 1.4085 -2.4396 -0.0005 6 1 0.4058 -2.4037 -0.4266 7 6 2.2171 -3.7223 -0.2042 8 1 3.2942 -3.6222 -0.3387 9 6 1.5666 -4.8395 -0.9786 10 8 1.3314 -4.7014 -2.1604 11 7 1.2459 -5.9920 -0.3578 12 6 0.6130 -7.0779 -1.1105 13 6 -0.2243 -8.0349 -0.2508 14 7 0.3153 -9.1439 -1.0520 15 6 -0.1037 -10.3979 -1.4083 16 1 -1.0603 -10.7650 -1.0668 17 6 0.7014 -11.1977 -2.2076 18 7 1.8674 -10.7506 -2.6234 19 14 0.1301 -12.9086 -2.6932 20 1 1.1639 -13.5534 -3.5421 21 1 -0.0849 -13.7241 -1.4709 22 1 -1.1425 -12.8088 -3.4519 23 6 1.5058 -8.3159 -1.2966 24 6 1.6436 -3.3913 1.1751 25 6 0.4534 -4.2200 1.6626 26 6 2.6257 -2.9453 2.2601 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5137 -0.8899 30 1 2.4422 1.6198 -1.0277 31 1 1.6715 2.0648 0.5139 32 1 3.2130 1.1747 0.5138 33 1 3.2420 -1.1345 -0.0009 34 1 1.4341 -6.1025 0.5873 35 1 0.1132 -6.7389 -2.0180 36 1 -1.2991 -7.8969 -0.3689 37 1 0.0852 -8.0634 0.7939 38 1 2.4302 -11.3095 -3.1817 39 1 2.2714 -8.4184 -0.5277 40 1 1.9051 -8.4171 -2.3058 41 1 0.7739 -4.8741 2.4736 42 1 -0.3307 -3.5534 2.0217 43 1 0.0691 -4.8230 0.8399 44 1 3.6090 -2.7865 1.8172 45 1 2.2746 -2.0157 2.7081 46 1 2.6934 -3.7158 3.0280 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030646653.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:28 Heat of formation + Delta-G solvation = 53.208201 kcal Electronic energy + Delta-G solvation = -23509.405889 eV Core-core repulsion = 20208.964393 eV Total energy + Delta-G solvation = -3300.441496 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41250 -38.52167 -37.31458 -35.73787 -33.49406 -31.83422 -29.90796 -28.25733 -28.09746 -27.33022 -26.96615 -24.61575 -24.00825 -22.28384 -20.18795 -19.77794 -19.21300 -18.06208 -16.78479 -16.28698 -15.93498 -15.52925 -14.91173 -14.78608 -14.41982 -14.22859 -13.87069 -13.83913 -13.59625 -13.23045 -12.76727 -12.66481 -12.63535 -12.53626 -12.32937 -12.10639 -11.91164 -11.84890 -11.55799 -11.46896 -11.38376 -10.97764 -10.93845 -10.79369 -10.56520 -10.40394 -10.12534 -9.99229 -9.47892 -9.39841 -8.83389 -8.63413 -8.31539 -6.93863 -5.78577 -3.13099 1.87332 2.89847 3.36941 3.40757 3.44376 3.45490 3.64235 4.40492 4.49443 4.51433 4.65370 4.74743 4.87471 4.91395 5.09845 5.14856 5.30218 5.32852 5.39966 5.43357 5.45915 5.48694 5.55222 5.57370 5.58861 5.68991 5.74836 5.76351 5.79239 5.81275 5.97560 6.00599 6.03757 6.19503 6.24302 6.38509 6.46194 6.54126 6.72095 6.76532 7.20304 7.34892 7.54555 7.90154 7.95009 8.57732 9.00473 9.67125 10.58418 11.38377 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.036243 B = 0.002855 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.377697 B = 9806.636722 C = 9962.944817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.128 4.128 5 C -0.085 4.085 6 H 0.112 0.888 7 C -0.166 4.166 8 H 0.131 0.869 9 C 0.542 3.458 10 O -0.539 6.539 11 N -0.708 5.708 12 C 0.084 3.916 13 C 0.112 3.888 14 N -0.604 5.604 15 C -0.222 4.222 16 H 0.083 0.917 17 C -0.006 4.006 18 N -0.917 5.917 19 Si 0.916 3.084 20 H -0.289 1.289 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.145 3.855 24 C -0.104 4.104 25 C -0.141 4.141 26 C -0.112 4.112 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.399 0.601 35 H 0.116 0.884 36 H 0.045 0.955 37 H 0.034 0.966 38 H 0.256 0.744 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 21.741 10.946 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.130 4.130 3 C -0.172 4.172 4 C -0.146 4.146 5 C -0.104 4.104 6 H 0.130 0.870 7 C -0.187 4.187 8 H 0.149 0.851 9 C 0.327 3.673 10 O -0.416 6.416 11 N -0.360 5.360 12 C -0.021 4.021 13 C -0.016 4.016 14 N -0.330 5.330 15 C -0.349 4.349 16 H 0.101 0.899 17 C -0.203 4.203 18 N -0.563 5.563 19 Si 0.746 3.254 20 H -0.215 1.215 21 H -0.211 1.211 22 H -0.209 1.209 23 C 0.018 3.982 24 C -0.104 4.104 25 C -0.199 4.199 26 C -0.169 4.169 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.128 0.872 34 H 0.235 0.765 35 H 0.134 0.866 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.472 21.466 9.905 23.646 hybrid contribution 0.115 -1.090 0.212 1.116 sum 0.587 20.376 10.117 22.757 Atomic orbital electron populations 1.20842 0.92342 1.02023 1.02270 1.21531 0.95919 0.94766 1.00747 1.20827 0.99540 0.94805 1.02006 1.21899 0.98602 0.91611 1.02535 1.21372 0.99516 0.88187 1.01322 0.86962 1.22679 1.00563 0.96516 0.98987 0.85104 1.19583 0.77992 0.82598 0.87086 1.90710 1.53760 1.81436 1.15686 1.46320 1.61307 1.14865 1.13489 1.23717 0.97269 0.84758 0.96399 1.22704 0.97030 0.87465 0.94385 1.45266 1.17949 1.13430 1.56315 1.18851 1.01714 0.88199 1.26103 0.89936 1.24844 0.96501 0.98811 1.00182 1.69827 1.10845 1.36818 1.38849 0.86143 0.77595 0.83537 0.78122 1.21490 1.21107 1.20926 1.22565 0.90283 0.84330 1.01021 1.21737 0.98958 1.00660 0.89080 1.21810 0.96020 0.99496 1.02525 1.21337 0.97412 1.01220 0.96947 0.91504 0.92366 0.91423 0.91526 0.91977 0.92003 0.87154 0.76500 0.86640 0.93667 0.94899 0.93446 0.95594 0.90675 0.91419 0.91859 0.90353 0.92305 0.91989 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 8.76 36.01 0.32 -0.65 16 2 C -0.13 -1.13 6.05 -101.07 -0.61 -1.74 16 3 C -0.12 -0.79 9.97 36.00 0.36 -0.44 16 4 C -0.13 -1.23 8.28 -36.02 -0.30 -1.52 16 5 C -0.09 -0.93 4.82 -91.74 -0.44 -1.37 16 6 H 0.11 1.34 6.80 -51.93 -0.35 0.98 16 7 C -0.17 -2.02 5.52 -91.78 -0.51 -2.53 16 8 H 0.13 1.47 8.05 -51.93 -0.42 1.05 16 9 C 0.54 8.82 6.65 -10.99 -0.07 8.75 16 10 O -0.54 -11.22 16.69 5.55 0.09 -11.13 16 11 N -0.71 -11.08 3.80 -53.48 -0.20 -11.28 16 12 C 0.08 1.65 4.63 -67.67 -0.31 1.34 16 13 C 0.11 2.25 8.45 -8.50 -0.07 2.18 16 14 N -0.60 -15.69 3.78 -184.62 -0.70 -16.39 16 15 C -0.22 -6.27 10.75 -15.06 -0.16 -6.43 16 16 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -27.74 11.50 55.49 0.64 -27.10 16 19 Si 0.92 22.28 29.55 -169.99 -5.02 17.25 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.15 3.51 7.23 -8.37 -0.06 3.45 16 24 C -0.10 -1.00 2.65 -154.47 -0.41 -1.41 16 25 C -0.14 -1.33 8.42 37.16 0.31 -1.01 16 26 C -0.11 -0.88 8.87 37.16 0.33 -0.55 16 27 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 28 H 0.06 0.40 7.94 -51.93 -0.41 -0.01 16 29 H 0.07 0.60 7.54 -51.93 -0.39 0.21 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.37 8.05 -51.92 -0.42 -0.05 16 32 H 0.06 0.39 8.06 -51.93 -0.42 -0.03 16 33 H 0.11 0.97 8.04 -52.48 -0.42 0.55 16 34 H 0.40 5.22 6.99 -40.82 -0.29 4.93 16 35 H 0.12 2.51 7.45 -51.93 -0.39 2.12 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.61 8.13 -51.93 -0.42 0.19 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 2.08 7.11 -51.93 -0.37 1.71 16 41 H 0.07 0.55 7.96 -51.92 -0.41 0.14 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.88 5.03 -51.93 -0.26 0.62 16 44 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.45 7.94 -51.93 -0.41 0.04 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -33.07 371.06 -9.20 -42.27 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.87 Total: 2.99 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -1.73 Total: -2.21 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.26 Total: -54.77 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.07 -9.20 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030646653.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.480 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds