Wall clock time and date at job start Tue Mar 31 2020 08:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50699 * 120.00021 * 2 1 4 4 C 1.30995 * 119.99852 * 180.02562 * 2 1 3 5 5 C 1.50707 * 120.00158 * 359.97438 * 4 2 1 6 6 H 1.08999 * 115.55651 * 25.70266 * 5 4 2 7 7 C 1.52995 * 117.49881 * 171.39342 * 5 4 2 8 8 H 1.09001 * 117.51605 * 214.97421 * 7 5 4 9 9 C 1.50708 * 117.50074 * 359.97438 * 7 5 4 10 10 O 1.21274 * 119.99973 * 311.74859 * 9 7 5 11 11 N 1.34770 * 119.99880 * 131.75024 * 9 7 5 12 12 C 1.46501 * 120.00206 * 180.02562 * 11 9 7 13 13 C 1.53942 * 113.74580 * 154.99967 * 12 11 9 14 14 N 1.47581 * 86.24283 * 137.89531 * 13 12 11 15 15 C 1.36932 * 134.49265 * 155.42368 * 14 13 12 16 16 H 1.08003 * 120.00348 * 353.16063 * 15 14 13 17 17 C 1.38816 * 120.00140 * 173.16247 * 15 14 13 18 18 N 1.31620 * 119.99605 * 352.03030 * 17 15 14 19 19 Si 1.86796 * 120.00170 * 172.03293 * 17 15 14 20 20 H 1.48497 * 109.47144 * 94.85743 * 19 17 15 21 21 H 1.48497 * 109.47181 * 214.86064 * 19 17 15 22 22 H 1.48507 * 109.47206 * 334.86210 * 19 17 15 23 23 C 1.47811 * 90.92216 * 335.45992 * 14 13 12 24 24 C 1.52991 * 60.00096 * 107.48624 * 7 5 4 25 25 C 1.53011 * 117.49588 * 107.48615 * 24 7 5 26 26 C 1.52995 * 117.50029 * 252.50474 * 24 7 5 27 27 H 1.08997 * 109.47116 * 239.99836 * 1 2 3 28 28 H 1.08999 * 109.47035 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47237 * 119.99485 * 1 2 3 30 30 H 1.08999 * 109.47082 * 270.00351 * 3 2 1 31 31 H 1.09006 * 109.47065 * 30.00283 * 3 2 1 32 32 H 1.09001 * 109.46974 * 149.99858 * 3 2 1 33 33 H 1.07998 * 120.00087 * 180.02562 * 4 2 1 34 34 H 0.97004 * 120.00313 * 359.97438 * 11 9 7 35 35 H 1.09003 * 112.94164 * 23.40288 * 12 11 9 36 36 H 1.09000 * 113.76822 * 252.25324 * 13 12 11 37 37 H 1.08999 * 113.76910 * 23.53715 * 13 12 11 38 38 H 0.96996 * 119.99585 * 179.97438 * 18 17 15 39 39 H 1.09004 * 113.66607 * 270.23342 * 23 14 13 40 40 H 1.09000 * 113.93490 * 138.88775 * 23 14 13 41 41 H 1.09005 * 109.46802 * 111.39273 * 25 24 7 42 42 H 1.09002 * 109.46959 * 231.38992 * 25 24 7 43 43 H 1.08997 * 109.46903 * 351.39527 * 25 24 7 44 44 H 1.08998 * 109.46880 * 53.82831 * 26 24 7 45 45 H 1.09012 * 109.47006 * 173.82106 * 26 24 7 46 46 H 1.08997 * 109.47820 * 293.82512 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4084 -2.4396 -0.0005 6 1 0.4058 -2.4037 -0.4266 7 6 2.2172 -3.7223 -0.2042 8 1 1.7469 -4.5306 -0.7642 9 6 3.7063 -3.5839 -0.3901 10 8 4.1463 -2.7752 -1.1795 11 7 4.5491 -4.3589 0.3209 12 6 5.9967 -4.2240 0.1407 13 6 6.8179 -4.6714 1.3635 14 7 7.7297 -5.3111 0.3953 15 6 9.0513 -5.6689 0.4135 16 1 9.6766 -5.3839 1.2467 17 6 9.5876 -6.3979 -0.6391 18 7 8.7981 -6.8797 -1.5755 19 14 11.4297 -6.6951 -0.7265 20 1 11.7485 -8.0103 -0.1150 21 1 11.8651 -6.6908 -2.1462 22 1 12.1402 -5.6206 0.0125 23 6 6.6420 -5.4088 -0.6008 24 6 1.6431 -3.3908 1.1746 25 6 0.4523 -4.2190 1.6618 26 6 2.6248 -2.9443 2.2599 27 1 -0.3633 -0.5138 0.8899 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8901 30 1 2.4421 1.6198 -1.0277 31 1 1.6714 2.0648 0.5139 32 1 3.2129 1.1747 0.5139 33 1 3.2419 -1.1345 -0.0001 34 1 4.1972 -5.0055 0.9526 35 1 6.2871 -3.2488 -0.2501 36 1 7.2704 -3.8468 1.9144 37 1 6.2959 -5.3781 2.0086 38 1 9.1729 -7.3888 -2.3112 39 1 6.0690 -6.3337 -0.5338 40 1 6.9522 -5.1735 -1.6189 41 1 0.7635 -4.8462 2.4972 42 1 -0.3460 -3.5515 1.9863 43 1 0.0913 -4.8492 0.8491 44 1 3.2148 -2.1045 1.8928 45 1 2.0708 -2.6385 3.1475 46 1 3.2881 -3.7714 2.5126 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030646654.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:41 Heat of formation + Delta-G solvation = 44.616218 kcal Electronic energy + Delta-G solvation = -23790.077523 eV Core-core repulsion = 20489.263451 eV Total energy + Delta-G solvation = -3300.814073 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39762 -38.38990 -37.05565 -35.62661 -33.40942 -31.76911 -29.87117 -28.06508 -27.91201 -27.61959 -26.73357 -24.82920 -24.00876 -22.22168 -20.16265 -19.67220 -19.02905 -17.95489 -16.76583 -16.34166 -15.73667 -15.67098 -14.87982 -14.53983 -14.41159 -14.09080 -13.87367 -13.73262 -13.55142 -13.22679 -12.86088 -12.68351 -12.53718 -12.43312 -12.34726 -11.95295 -11.92646 -11.66286 -11.51450 -11.47358 -11.34810 -10.95169 -10.84139 -10.74252 -10.47447 -10.46265 -10.11488 -9.92755 -9.53260 -9.35338 -8.76969 -8.49619 -8.37082 -6.92531 -5.80082 -3.11900 2.05883 2.92553 3.37798 3.42879 3.46324 3.47954 3.70514 4.38861 4.46347 4.59999 4.76206 4.87492 4.91686 4.98314 5.10360 5.26185 5.31346 5.40708 5.43626 5.45392 5.48176 5.56391 5.59228 5.61628 5.69048 5.71670 5.78332 5.80396 5.83885 5.90738 5.98911 6.01118 6.12073 6.21626 6.23870 6.43394 6.56471 6.70563 6.81796 6.91539 7.19247 7.37718 7.50912 7.93648 7.94981 8.61515 9.01416 9.68172 10.56258 11.38064 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.025604 B = 0.003252 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.320409 B = 8607.230142 C = 9043.138433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.142 4.142 3 C -0.113 4.113 4 C -0.121 4.121 5 C -0.085 4.085 6 H 0.113 0.887 7 C -0.173 4.173 8 H 0.130 0.870 9 C 0.544 3.456 10 O -0.538 6.538 11 N -0.709 5.709 12 C 0.091 3.909 13 C 0.112 3.888 14 N -0.606 5.606 15 C -0.227 4.227 16 H 0.082 0.918 17 C -0.005 4.005 18 N -0.917 5.917 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.160 3.840 24 C -0.101 4.101 25 C -0.116 4.116 26 C -0.121 4.121 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.397 0.603 35 H 0.110 0.890 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.255 0.745 39 H 0.034 0.966 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.878 9.691 6.971 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.142 4.142 3 C -0.170 4.170 4 C -0.139 4.139 5 C -0.103 4.103 6 H 0.131 0.869 7 C -0.194 4.194 8 H 0.148 0.852 9 C 0.329 3.671 10 O -0.415 6.415 11 N -0.360 5.360 12 C -0.014 4.014 13 C -0.015 4.015 14 N -0.332 5.332 15 C -0.354 4.354 16 H 0.099 0.901 17 C -0.203 4.203 18 N -0.563 5.563 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.034 3.966 24 C -0.102 4.102 25 C -0.173 4.173 26 C -0.178 4.178 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.231 0.769 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.231 10.127 6.270 22.620 hybrid contribution 0.814 -0.876 0.052 1.197 sum -18.417 9.250 6.322 21.557 Atomic orbital electron populations 1.20792 0.92673 1.01803 1.01696 1.21467 0.95523 0.94924 1.02258 1.20792 0.99590 0.94657 1.01945 1.22134 0.99731 0.91344 1.00680 1.21394 0.98810 0.88838 1.01300 0.86916 1.22630 0.93280 1.01819 1.01651 0.85236 1.19514 0.86766 0.80481 0.80290 1.90687 1.78303 1.36531 1.36005 1.46162 1.07191 1.39738 1.42894 1.23824 0.76545 1.01742 0.99273 1.22860 0.90672 0.95279 0.92712 1.45796 1.05036 1.70885 1.11520 1.18980 0.82363 1.28842 1.05248 0.90074 1.24845 0.98219 0.99158 0.98042 1.69857 1.33379 1.39318 1.13765 0.86098 0.84612 0.77925 0.77083 1.21596 1.21533 1.20448 1.22570 0.86290 0.92509 0.95238 1.21718 0.98719 1.00638 0.89089 1.21380 0.95624 0.98864 1.01426 1.21442 0.97742 1.01708 0.96912 0.91805 0.92525 0.91874 0.91650 0.92243 0.91991 0.86116 0.76924 0.87233 0.93352 0.94859 0.93546 0.94867 0.91920 0.91659 0.91999 0.92184 0.91785 0.91934 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 8.76 36.01 0.32 -0.64 16 2 C -0.14 -1.53 6.05 -101.06 -0.61 -2.15 16 3 C -0.11 -1.11 9.97 36.01 0.36 -0.75 16 4 C -0.12 -1.51 6.76 -36.02 -0.24 -1.76 16 5 C -0.08 -0.93 5.11 -91.77 -0.47 -1.40 16 6 H 0.11 1.07 6.80 -51.93 -0.35 0.72 16 7 C -0.17 -2.06 5.78 -91.77 -0.53 -2.59 16 8 H 0.13 1.37 8.05 -51.93 -0.42 0.95 16 9 C 0.54 8.60 5.76 -10.98 -0.06 8.54 16 10 O -0.54 -10.66 14.71 5.56 0.08 -10.58 16 11 N -0.71 -10.96 4.74 -55.07 -0.26 -11.22 16 12 C 0.09 1.77 4.44 -69.80 -0.31 1.46 16 13 C 0.11 2.24 8.68 -2.98 -0.03 2.21 16 14 N -0.61 -15.66 3.69 -177.07 -0.65 -16.32 16 15 C -0.23 -6.42 10.68 -15.06 -0.16 -6.58 16 16 H 0.08 2.20 7.84 -52.48 -0.41 1.79 16 17 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 18 N -0.92 -27.70 11.79 55.49 0.65 -27.05 16 19 Si 0.91 22.32 29.56 -169.99 -5.02 17.29 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.16 3.87 7.12 -2.85 -0.02 3.85 16 24 C -0.10 -0.97 2.70 -154.51 -0.42 -1.39 16 25 C -0.12 -0.85 9.84 37.16 0.37 -0.48 16 26 C -0.12 -1.21 8.44 37.16 0.31 -0.89 16 27 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 28 H 0.06 0.42 7.94 -51.93 -0.41 0.01 16 29 H 0.06 0.52 7.54 -51.93 -0.39 0.13 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.48 8.05 -51.93 -0.42 0.07 16 32 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 33 H 0.12 1.84 5.81 -52.49 -0.31 1.53 16 34 H 0.40 5.15 8.07 -40.82 -0.33 4.83 16 35 H 0.11 2.31 7.46 -51.93 -0.39 1.92 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.03 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.70 7.71 -51.93 -0.40 1.30 16 41 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 44 H 0.06 0.75 6.10 -51.93 -0.32 0.43 16 45 H 0.06 0.54 8.13 -51.92 -0.42 0.11 16 46 H 0.06 0.64 7.15 -51.93 -0.37 0.26 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -32.84 369.17 -9.09 -41.93 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.85 Total: 3.21 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.59 Total: -2.82 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.26 Total: -54.58 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.84 -9.09 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030646654.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.542 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds